birogeri/kspace-explorer

⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation

Language: Python - Size: 68.2 MB - Last synced: 30 days ago - Pushed: 11 months ago - Stars: 66 - Forks: 11

CyclotronResearchCentre/bidsme

Flexible bidsificator for multimodal datasets

Language: Python - Size: 10.8 MB - Last synced: 30 days ago - Pushed: 30 days ago - Stars: 6 - Forks: 2

BeataWereszczynska/TIandTE_wish

Calculating theoretical MRI images with both TI (T1-weighting) and TE (T2-weighting) of choice, from separate T1-weighted and T2-weighted sets of images. (Python 3)

Language: Python - Size: 21.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

BeataWereszczynska/T1wIR_to_T1wSR

Simulating T1-weighted saturation recovery MRI images for arbitrary values of TR from a set of T1-weighted inversion recovery MRI images. (Python 3)

Language: Python - Size: 3.25 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

BeataWereszczynska/TI_TE_wish

Simulating T1- and T2-weighted MRI images with arbitrary values of TI or TE, respectively. (Python 3)

Language: Python - Size: 9.83 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

4e0n/octopus-reel

"Octopus Realtime Encephalography Lab" is the (hard) real-time networked EEG-lab framework I have developed during my PhD Thesis at Brain Research Lab of Hacettepe University Faculty of Medicine Biophysics Lab. It is meant to be a holistic golden-standard solution for all tasks of cortical source localization/networking, brain-computer interfaces and neuro-feedback applications.

Language: C++ - Size: 1.17 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 3

jeevan6996/Knee-Ligament-Tear-Assessment

A Streamlit application in Python with deep learning based models to assess ligament tear as well as the grade of the tear

Language: Jupyter Notebook - Size: 60.6 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

anindox8/2D-RetinaNet-for-Prostate-Localization-in-mpMRI

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.

Language: Python - Size: 2.31 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

Kratos997/json_MRI_data_extraction

Extracting MRI sequence header data (Magnetic field, Echo Time, Frequency, etc.) from JSON files (.json)

Language: Jupyter Notebook - Size: 17.6 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

EEG-Easy/EEG-Schizophrenia-vs-Healthy

Language: Jupyter Notebook - Size: 32.9 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 2

BeataWereszczynska/Swelling_tablet_fronts_D_k_from_MRI_T2_or_img

Tool for calculating swelling tablet eroding front's diffusion rate D and the rate of the swelling k from time series of either T2-maps or MRI images in FDF or Text Image format. (Python 3)

Language: Jupyter Notebook - Size: 70.4 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

BeataWereszczynska/MRI_k-space-derived_details_edges

k-space based details/edges detection in MRI images with optional k-space based denoising and detail control (on the example of Agilent FID data). (Python 3)

Language: Python - Size: 31.5 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

BeataWereszczynska/k-space_masking_for_MRI_denoising

Graduate k-space masking for MRI image denoising and blurring (on the example of Agilent FID data). (Python 3)

Language: Python - Size: 27.2 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

BeataWereszczynska/k-space_wght_msk_for_MRI_denoising

k-space weighting and masking for denoising of MRI image without blurring or losing contrast, as well as for brightening of the objects in the image with simultaneous noise reduction (on the example of Agilent FID data). (Python 3)

Language: Python - Size: 27.4 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

gsroberts1/QVT

Quantitative Velocity Tool (QVT) for Cranial 4D Flow Hemodynamic Analysis

Language: MATLAB - Size: 21.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 3

mjpyeon/pytorch-dicom-classification

Code for analyzing medical images saved as .dicom files

Language: Python - Size: 17.6 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 50 - Forks: 17

rastislavkopal/3D_BRAIN_TUMOR_SEGMENTATION

Deep-learning (U-NET) CNN model for fully automatic glioma segmentation in 3D volume of MRI data, Survival prediction using different algorithms

Language: Jupyter Notebook - Size: 3.92 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 6 - Forks: 2

rmsouza01/MC-MRI-Rec

Language: Jupyter Notebook - Size: 99.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 41 - Forks: 7

elayden/MRIqual

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Language: MATLAB - Size: 2.57 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 6 - Forks: 6

grundm/graphCA

Code to run and analyze fMRI study of somatosensory detection task

Language: MATLAB - Size: 5.49 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

MRSRL/mridata-recon

Basic reconstruction scripts for data uploaded to mridata.org

Language: Python - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 11 - Forks: 1

DorienHuijser/MRIsharingguide

We developed a guide for researchers in the Netherlands who want to share brain MRI data to help them get started.

Size: 941 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 0

autism-research-centre/Normative_modeling Fork of rb643/Normative_modeling

Normative modelling code to go along with Bethlehem et al. 2018

Language: R - Size: 14.1 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

brainlife/ui-fibernavigator

Docker container for FiberNavigator for Brainlife.io

Language: Shell - Size: 1.47 MB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

sahityamantravadi/cs231n-final-project

Detection and removal of biases from brain MRI using adversarial architectures. This was my final project for CS 231n (Convolutional Neural Networks for Visual Recognition) at Stanford.

Language: Jupyter Notebook - Size: 19.9 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

lorenzomagazzini/meg-ctf

MATLAB code for extracting, converting and anonymising files in CTF MEG proprietary format.

Language: Matlab - Size: 4.88 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0