Masharipov/TMFC_toolbox

TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.

Language: MATLAB - Size: 42.7 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 4 - Forks: 2

IHB-IBR-department/TMFC_toolbox Fork of Masharipov/TMFC_toolbox

TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.

Language: MATLAB - Size: 42.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 1

asamallab/NodePersistence_PH_FCM

This repository is associated with the manuscript: “Node persistence from topological data analysis reveals changes in brain functional connectivity”

Language: Jupyter Notebook - Size: 336 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

vmadanmohan/EWC

Code to compute the Event-marked Windowed Communication (EWC) from neural time series.

Language: MATLAB - Size: 80.1 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1

nabilalibou/connectivity_segmentation

Track and segment the dynamics of brain connectivity networks

Language: Python - Size: 722 KB - Last synced at: 24 days ago - Pushed at: 9 months ago - Stars: 4 - Forks: 1

pni-lab/connattractor

Connectome-based Hopfiled Neural Networks (fcHNN)

Language: Jupyter Notebook - Size: 2.22 GB - Last synced at: 15 days ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 4

junipertcy/functional-connectivity

Sensing the functional connectivity of the brain

Language: Python - Size: 3.7 MB - Last synced at: 1 day ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

brainets/frites

Framework for Information Theoretical analysis of Electrophysiological data and Statistics

Language: Python - Size: 409 MB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 91 - Forks: 21

genandlam/fmri-functional-connectivity

Predicting Gender from Resting-State fMRI Using Functional Connectivity and Machine Learning

Language: Jupyter Notebook - Size: 5.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

makism/dyconnmap

A dynamic connectome mapping module in python.

Language: Python - Size: 105 MB - Last synced at: 8 days ago - Pushed at: almost 2 years ago - Stars: 104 - Forks: 31

raamana/neuropredict

Easy and comprehensive assessment of predictive power, with support for neuroimaging features

Language: Python - Size: 16.4 MB - Last synced at: 20 days ago - Pushed at: over 1 year ago - Stars: 101 - Forks: 27

MLDataAnalytics/FC-SpatialHeterogeneity

Spatial Heterogeneity and Subtypes of Functional Connectivity Development in Youth

Language: MATLAB - Size: 27.3 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

INM-6/multi-area-model

A large-scale spiking model of the vision-related areas of macaque cortex.

Language: Python - Size: 43.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 71 - Forks: 50

Mike1012W/Local-SC-FC-coupling-pattern

For local SC-FC subgraph extraction and counterfactual explanation.

Language: Python - Size: 51.8 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

UAIBC-Brain/Local-SC-FC-coupling-pattern

For local SC-FC subgraph extraction and counterfactual explanation.

Language: Python - Size: 54.7 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 2

NeoNeuron/causal4reconstruction

Code for the PNAS paper: Causal connectivity measures for pulse-output network reconstruction: Analysis and applications

Language: Python - Size: 1.59 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 2

nimh-sfim/fc_introspection

Code associated with pre-print titled: In-Scanner Thoughts shape Resting-state Functional Connectivity: how participants “rest” matters.

Language: Jupyter Notebook - Size: 135 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

aliobaibk/nnamm

Data and codes supporting the manuscript "Dialogue mechanisms between astrocytic and neuronal networks: a whole-brain modelling approach" by Ali et al., 2025, PCBI.

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PSYMARKER/leida-matlab

Leading Eigenvector Dynamics Analysis Matlab Toolbox

Language: MATLAB - Size: 430 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 2

5a7man/eeg_fConn

Python library to compute functional connectivity measures from EEG

Language: Python - Size: 20.5 KB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 3

hamidm317/EEG_ProcessingTools

This repository is a set of tools that I use in my thesis, the main focus is processing EEG data, but some functions is expandable to other time series and signal processing fields.

Language: Python - Size: 463 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

IHB-IBR-department/BOLD_deconvolution

BOLD signal deconvolution based on ridge regression. Can be used to calculate psycho-physiological interaction (PPI) at the neuronal level. Python and MATLAB functions recover neuronal time series, similar to the Parametric Empirical Bayes (PEB) approach implemented in SPM12 (spm_peb_ppi.m).

Language: Jupyter Notebook - Size: 2.77 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

WheelockLab/MachineLearning_NetworkLevelAnalysis

Machine learning pipelines with K-fold cross-validation library for FC data

Language: MATLAB - Size: 36.1 KB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1

schw4b/DGM

Dynamical graphical models for multivariate time series data to estimate directed dynamic relationships in networks.

Language: R - Size: 629 KB - Last synced at: 6 days ago - Pushed at: over 3 years ago - Stars: 25 - Forks: 14

Masharipov/TMFC_simulations

Repository for Masharipov, Knyazeva, Korotkov, Cherednichenko & Kireev: "Comparison of whole-brain task-modulated functional connectivity methods for fMRI task connectomics"

Language: Jupyter Notebook - Size: 1.96 GB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1

ctrltz/bci-brain-connectivity

Multiverse analysis of SNR and phase synchronization as predictors of sensorimotor BCI performance

Language: MATLAB - Size: 23.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

lazyjiang/Stroke-EEG-Brain-network-analysis

Functional connectivity and brain network analysis for motor imagery data in stroke patients

Language: Python - Size: 3.02 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

francesco-innocenti/fc-simulations

Simulations of different functional connectivity measures.

Language: Python - Size: 43 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Utrosa/Thesis_scripts

Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.

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romybeaute/hypnomed

Language: Jupyter Notebook - Size: 1.15 GB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

OnnoKampman/FCEst-benchmarking

Benchmarks for functional connectivity estimators and FCEst Python package

Language: Python - Size: 7.23 MB - Last synced at: 7 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

OnnoKampman/phd-thesis

LaTeX code for my PhD thesis.

Language: TeX - Size: 7.68 MB - Last synced at: 7 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

OnnoKampman/FCEst

Methods for estimating time-varying functional connectivity (TVFC)

Language: Python - Size: 111 KB - Last synced at: 7 months ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 1

mccarthy-m-g/mccarthy_EEGNetworkVariants_2024

Materials and source code for my MSc thesis: "Studying Network Variants With Electroencephalography"

Language: R - Size: 438 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

Eden-Kramer-Lab/GLM-CFC Fork of jessicanada/GLM-CFC

A GLM based approach to measure CFC

Language: MATLAB - Size: 426 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 15 - Forks: 7

anakhnikian/signal_analysis

A suite of signal processing and analysis algorithms with an emphasis on functional connectivity

Language: MATLAB - Size: 4.15 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

IBT-FMI/SAMRI

Small Animal Magnetic Resonance Imaging via Python.

Language: Python - Size: 5.56 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 42 - Forks: 27

Minarose/Resting-State-fMRI-Analysis

some of the work I've done with resting-state fMRI

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hamidm317/GrangerCausality

This Repository is a part of my thesis for analyzing connectivity of EEG channels, but codes are extendable to other fields and studies.

Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

kundaMwiza/fMRI-site-adaptation

Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)

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SMLudwig/EEGminer

EEGminer: Discovering Interpretable Features of Brain Activity with Learnable Filters

Language: Python - Size: 32.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

EsiSeraj/ERP_Connectivity_EMG_Analysis

Essential Motor Cortex Signal Processing MATLAB Toolbox which implements various methods for three major aspects of investigating human motor cortex from Neuroscience view point: (1) ERP estimation and quantification, (2) Cortical Functional Connectivity analysis and (3) EMG quantification

Language: MATLAB - Size: 2.14 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 10 - Forks: 5

alruizzo/interFC

Between-network functional connectivity across frequency bins described in Küchenhoff et al. (2021), European Journal of Neuroscience.

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alruizzo/MS-FC

Analysis of functional connectivity and fatigue and sleep quality in multiple sclerosis (MS), described in Ruiz-Rizzo et al. (2022), European Journal of Neurology

Language: R - Size: 43.9 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

alruizzo/SC-FC

Structural and Functional Connectivity of the Salience Network in Subjective Cognitive Decline

Language: R - Size: 86.9 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

alruizzo/A-MTL

Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.

Language: Shell - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

dmascali/fmri_denoising

Collection of Matlab functions for denoising fMRI data

Language: MATLAB - Size: 178 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 10 - Forks: 1

dmascali/HCP_resting-state_QC

A Quality Control database for the HCP resting-state scans

Language: C - Size: 5.72 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

orhansoyuhos/rMEG-FEF-vs-IFJ

The analysis pipeline for our paper 'Functional connectivity fingerprints of the frontal eye field and inferior frontal junction suggest spatial versus nonspatial processing in the prefrontal cortex'.

Language: MATLAB - Size: 4.69 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

remolek/NFC

This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"

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kchardon/adhd_brain_functional_connectivity

Work did at the end of my internship, based on Nastaran Hamedi et al. Detecting ADHD Based on Brain Functional Connectivity Using Resting-State MEG Signals

Language: Jupyter Notebook - Size: 1.83 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

aorliche/ukb-longitudinal-smt-vis

Finding of increased Somatomotor-Visual functional connectivity in the UKB longitudinal cohort

Language: Jupyter Notebook - Size: 7.32 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

spisakt/BWAS_comment

Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""

Language: Jupyter Notebook - Size: 42.2 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 0

feilong/IDM_pred

The neural basis of intelligence in fine-grained cortical topographies

Language: Python - Size: 1.69 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 0

marccolomer/LAEEG_WB

Scripts to calculate InterSite Phase Clustering (ISPC) over time for the paper "Action experience in infancy predicts visual-motor functional connectivity during action anticipation". The scripts include ways of calculating whole-brain connectivity and connectivity between specific clusters or electrodes. The scripts also show examples of how to calculate ISPC-trial and wPLI.

Language: MATLAB - Size: 7.34 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

happytudouni/SourceSpaceFCAnalysis_DCN

Language: MATLAB - Size: 199 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 2

makism/brainnets 📦

a simple C++ graph analysis library

Language: C++ - Size: 44.9 KB - Last synced at: 8 days ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

grundm/graphCA

Code to run and analyze fMRI study of somatosensory detection task

Language: MATLAB - Size: 5.49 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

htwangtw/sbfc

Seed-based resting-state functional connectivity with Nilearn.

Language: Python - Size: 112 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

ColeLab/FlexHubMechanism

Publicly available code for "A flexible hub connectivity mechanism for cognitive control". Manuscript in-preparation. Part of C. Cocuzza's dissertation (Aim 3).

Size: 19.5 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

SripadaLab/Predictive_Modeling_Reliability_HCP

Supporting code for https://www.biorxiv.org/content/10.1101/796714v4

Language: Jupyter Notebook - Size: 214 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 0

ColeLab/controlCartography

Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.

Language: Jupyter Notebook - Size: 80.3 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 2

5a7man/Machine_learning_evaluates_changes_in_functional_connectivity_under_a_prolonged_cognitive_load

Source code of "Machine learning evaluates changes in functional connectivity under a prolonged cognitive load"

Language: Python - Size: 221 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

janarez/brain-connectivity

ML on FC matrices. Supporting code for diploma thesis at Charles Uni.

Language: Jupyter Notebook - Size: 88.8 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

Hui-Ling/BeamformerSourceImaging

Brainstorm plug-ins for MEG and EEG source imaging, including (1) maximum contrast beamformer (MCB) for the use in localization of brain sources, (2) spatiotemporal imaging of linearly-related source components (SILSC) for the use in identification of sources linearly correlated to the activity of a seed, and (3) beamformer-based imaging of phase-amplitude coupling (BIPAC) for the use in identification of sources coupled to seed activity.

Language: MATLAB - Size: 30.3 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 3

HNXJ/NeuroPy

A developing toolbox for data analysis and signal processing for Neuroscience on Python

Language: Jupyter Notebook - Size: 54.6 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

ColeLab/ActFlowCategories

Publicly available code for "Distributed network processes account for the majority of variance in localized visual category selectivity", Cocuzza et al., 2022.

Language: Jupyter Notebook - Size: 477 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0