GitHub topics: computational-neuroscience

Repositories

csinva/csinva.github.io

Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

Language: HTML - Size: 387 MB - Last synced at: about 4 hours ago - Pushed at: about 5 hours ago - Stars: 589 - Forks: 107

gifale95/BERG

Trained encoding models to generate in silico neural responses for arbitrary stimuli.

Language: Jupyter Notebook - Size: 11.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 18 - Forks: 2

jiaxiaogang/HE

螺旋熵减系统

Language: Objective-C - Size: 225 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 326 - Forks: 49

jiaxiaogang/HELIX_THEORY

螺旋熵减理论

Language: Objective-C - Size: 90.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 137 - Forks: 35

mpinb/in_silico_framework

An in silico framework for multi-scale modeling and analysis of in vivo neuron-network mechanisms

Language: Python - Size: 1.85 GB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 2 - Forks: 1

NACLab/ngc-learn

NGC-Learn: Neurobiological Systems Design and Simulation in Python

Language: Python - Size: 79.9 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 152 - Forks: 30

brian-team/brian2

Brian is a free, open source simulator for spiking neural networks.

Language: Python - Size: 36 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 1,015 - Forks: 239

esther-poniatowski/multitask-context-dependent-behavior

Data analysis of neuronal recordings in naive and trained animals performing multiple tasks in active and passive attentional states

Language: Jupyter Notebook - Size: 46.9 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0

Synaptic is a groundbreaking decentralized protocol that empowers users to manage their AI interactions seamlessly. With Synaptic, you gain full control over your AI memories, enhancing your experience across all platforms. 🐙💻

Language: TypeScript - Size: 1.94 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

NN4Neurosim/nn4n

Language: Python - Size: 5.18 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 26 - Forks: 0

OpenSourceBrain/Documentation

Updated documentation for the Open Source Brain platform using Jupyter Book

Language: Python - Size: 63.4 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 8 - Forks: 0

NeuroML/Documentation

Source repository for NeuroML documentation.

Language: Jupyter Notebook - Size: 239 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 13 - Forks: 9

CONECT-INT/CONECT-INT.github.io

Source code for the website

Language: CSS - Size: 24.3 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 2

KostasAndroulidakis/spike-x

R&D platform for Spiking Neural Networks and Neuromorphic Computing

Language: TypeScript - Size: 2.07 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

OpenSourceBrain/OSBv2

An updated version of the Open Source Brain platform

Language: Python - Size: 58.1 MB - Last synced at: 5 days ago - Pushed at: 8 days ago - Stars: 13 - Forks: 6

UHBiocomputation/UH-biocomputation-web

Repository for the UH Biocomputation group's website

Language: TeX - Size: 5.21 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 3 - Forks: 7

Metaverse-Crowdsource/Complete-Neural-Signal-Analysis

Feature extraction and prediction of human neural signals, using chaos theory, dynamical systems theory, various physics/maths theories, RNN, CNN, transformers

Language: Jupyter Notebook - Size: 1.51 GB - Last synced at: 2 days ago - Pushed at: 10 months ago - Stars: 33 - Forks: 8

simahashemi/CA3-CA1-Network-Learning-Stability

Simulates distinct learning dynamics and synaptic stability, highlighting the role of axon-carrying dendrites (AcD) in memory consolidation under inhibitory conditions.

Language: Jupyter Notebook - Size: 8.46 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

ChristianGaser/cat12

Computational Anatomy Toolbox for SPM12 or SPM25

Language: MATLAB - Size: 1.74 GB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 35 - Forks: 6

nandahkrishna/RNNReactivation

Code for "Sufficient conditions for offline reactivation in recurrent neural networks" (ICLR 2024)

Language: Python - Size: 1.62 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0

synergetics/spectrum

Higher Order Spectrum Estimation toolkit

Language: Python - Size: 843 KB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 65 - Forks: 28

RatInABox-Lab/RatInABox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

Language: Python - Size: 658 MB - Last synced at: 15 days ago - Pushed at: 3 months ago - Stars: 224 - Forks: 38

genn-team/genn

GeNN is a GPU-enhanced Neuronal Network simulation environment based on code generation for Nvidia CUDA.

Language: C++ - Size: 248 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 254 - Forks: 69

open-retina/open-retina

Collaborative retina modelling across datasets and species.

Language: Jupyter Notebook - Size: 84.3 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 11 - Forks: 1

rougier/spatial-computation

Spatial computation

Language: Python - Size: 16.2 MB - Last synced at: 1 day ago - Pushed at: over 3 years ago - Stars: 20 - Forks: 4

cyneuro/neuron-mechanisms-library

A library of current channels for use in Neuron-based models

Language: NMODL - Size: 310 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

burger-bro/computational-neuroscience-cookbook

This repository collects learning materials and sota resarch progress related to computational neuroscience.

Size: 36.7 MB - Last synced at: 18 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0

slinderman/ml4nd

Machine Learning Methods for Neural Data Analysis

Language: Jupyter Notebook - Size: 184 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 14 - Forks: 2

Unlimited-Research-Cooperative/Bio-Silicon-Synergetic-Intelligence-System

Bio-Silicon Synergetic Intelligence System

Language: Jupyter Notebook - Size: 309 MB - Last synced at: 9 days ago - Pushed at: 10 months ago - Stars: 24 - Forks: 4

Aryn-xy/Izhikevich-Neuron-Model

Izhikevich model for single neuron

Language: Python - Size: 53.7 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

ArminBaz/SR-IS

Importance sampling de-biases the successor representation for a more general and efficient representation of the environment.

Language: Jupyter Notebook - Size: 110 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

asoplata/open-science-resources

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

Size: 92.8 KB - Last synced at: 24 days ago - Pushed at: almost 3 years ago - Stars: 117 - Forks: 17

julienbrandoit/Spike2Pop---Bridging-Experimental-Neuroscience-and-Computational-Modeling

Spike2Pop 🧠⚡ is an open-source, user-friendly tool that allows neuroscientists to generate populations of degenerate conductance-based models (CBMs) from spike time recordings, making computational modeling more accessible and scalable for experimental workflows.

Language: Python - Size: 119 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

franitaa/ADHD-EEG-Game

Analysis of relevant differences between the EEG signal features of ADHD or control subjects, through unsupervised learning algorithms and dimension reduction methods.

Language: Jupyter Notebook - Size: 63.1 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

Aryn-xy/Reproducible-Spike-Train-Simulation

The repository contains a Python script that simulates neural spike train data with a fixed random seed for reproducibility. It visualizes the spike train, computes inter-spike intervals (ISI), and estimates the firing rate.

Language: Python - Size: 1.95 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

Aryn-xy/Neural-Spike-Train-Analysis-Randomly-Simulated

The repository contains a Python script that simulates neural spike train data using a Poisson process. It visualizes the spike train and calculates inter-spike intervals (ISI) and firing rate to analyze neuronal firing patterns.

Language: Python - Size: 0 Bytes - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

junipertcy/functional-connectivity

Sensing the functional connectivity of the brain

Language: Python - Size: 3.7 MB - Last synced at: about 7 hours ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1

NeuralEnsemble/neurotune

Package for fitting/optimization of NeuroML models

Language: Python - Size: 2.24 MB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 11

ccnmaastricht/angorapy

Build embodied brain models with ease.

Language: Python - Size: 156 MB - Last synced at: 28 days ago - Pushed at: 4 months ago - Stars: 19 - Forks: 1

emaballarin/foveatorch

👀🔥 Differentiable foveated vision for Deep Learning methods

Language: Python - Size: 1.51 MB - Last synced at: 23 days ago - Pushed at: 7 months ago - Stars: 6 - Forks: 0

asoplata/open-computational-neuroscience-resources

A publicly-editable collection of open computational neuroscience resources

Size: 279 KB - Last synced at: 26 days ago - Pushed at: about 1 year ago - Stars: 602 - Forks: 91

druckmann-lab/nepr208

Course website for NEPR208: Computational module, 1st year students

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BrainCog-X/Brain-Cog

Brain-inspired Cognitive Intelligence Engine (BrainCog) is a brain-inspired spiking neural network based platform for Brain-inspired Artificial Intelligence and simulating brains at multiple scales. The long term goal of BrainCog is to provide a comprehensive theory and system to decode the mechanisms and principles of human intelligence and its evolution, and develop artificial brains for brain-inspired conscious living AI in future Human-AI symbiotic Society.

Language: Python - Size: 3.47 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 513 - Forks: 76

HMUNACHI/fbnet

Modelling The Brain's Response To Natural Scenes In The Bottleneck Space.

Language: Python - Size: 979 KB - Last synced at: about 8 hours ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0

eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

Size: 379 KB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 803 - Forks: 83

andreabonvini/LastWeeksPotatoes

Personal blog.

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dkrawciw/CanardExplosionResearch_CompNeuroScience_CSM

We are researching Canard Explosions in our Computational Neuroscience class at the Colorado School of Mines. This Repository contains tests and functions for our results.

Language: Jupyter Notebook - Size: 7.59 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

mne-tools/mne-cpp

MNE-CPP: A Framework for Electrophysiology

Language: C++ - Size: 349 MB - Last synced at: 29 days ago - Pushed at: about 1 year ago - Stars: 164 - Forks: 144

mlprt/feedbax

Optimal feedback control + interventions, in JAX.

Language: Python - Size: 6.45 MB - Last synced at: 20 days ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0

openbraininstitute/BluePyEfe

BluePyEfe: Blue Brain Python E-feature extraction

Language: Python - Size: 7.93 MB - Last synced at: 17 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

ago109/contrastive-signal-dependent-plasticity

CSDP: Biological Credit Assignment for Spiking Neural Circuits

Language: Python - Size: 19.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 1

emer/leabra

Go implementation of Leabra algorithm for biologically-based models of cognition, based on emergent framework (with Python interface)

Language: Go - Size: 32.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 85 - Forks: 23

braph-software/BRAPH-2

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

Language: MATLAB - Size: 1.12 GB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 47 - Forks: 13

Tommy7414/PDMSNN-A-Brian2-Based-SNN-Software-for-Modeling-Perceptual-Decision-Making

A Brian2-based spiking neural network model for perceptual decision-making, featuring selective inhibition control and top-down modulation. The GUI supports real-time visualization and comprehensive analyses, including single-trial and multiple-trial performance metrics such as psychometric curves, reaction times (RT), and energy landscapes

Language: HTML - Size: 260 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

C16Mftang/place-cell-pred-coding

Learning grid cells by predictive coding

Language: Jupyter Notebook - Size: 34.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 0

scidash/neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit

Language: Jupyter Notebook - Size: 43.3 MB - Last synced at: 10 days ago - Pushed at: almost 4 years ago - Stars: 40 - Forks: 25

openbraininstitute/eFEL

Electrophys Feature Extraction Library

Language: Python - Size: 62.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 0

NSBLab/BrainEigenmodes

Code supporting 'Geometric constraints on human brain function'

Language: MATLAB - Size: 155 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 97 - Forks: 17

BlueBrain/BluePyOpt 📦

Blue Brain Python Optimisation Library

Language: Python - Size: 57.5 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 211 - Forks: 101

NeoNeuron/neoneuron.github.io

Kai Chen's Personal Webpage.

Language: SCSS - Size: 211 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

LCNS-SJTU/lcns-sjtu.github.io Fork of alshedivat/al-folio

Webpage of Lab of computational neuroscience @ Shanghai Jiao Tong University.

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fracapuano/brainformer

A transformer-based approach to predicting MEG readings from EEG sensory inputs. "Deep Learning" @ MVA, 2024.

Language: Python - Size: 8.67 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

gifale95/RNC

Algorithms to investigate (through neural control) the representational relationships between univariate or multivariate in silico fMRI responses of multiple visual areas of the brain.

Language: MATLAB - Size: 8.85 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

peterajhgraham/peterajhgraham

Files for my GitHub Profile.

Size: 1.62 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

neurolib-dev/neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

Language: Python - Size: 57.5 MB - Last synced at: 24 days ago - Pushed at: 5 months ago - Stars: 430 - Forks: 89

davrot/pytutorial

Computational Neuroscience, Machine Learning and Python tutorials

Language: HTML - Size: 28.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 4

flehue/DoC_modulation

BOLD dynamical connectivity analysis of Disorders of Consciousness, and modeling of underlying causes using the Dynamic Mean field Whole-Brain model

Language: Python - Size: 116 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

mrkrd/cochlea

Inner ear models for Python

Language: Python - Size: 5.2 MB - Last synced at: 19 days ago - Pushed at: 11 months ago - Stars: 111 - Forks: 43

ProjectPyRhO/PyRhO

A virtual optogenetics laboratory

Language: Python - Size: 3.8 MB - Last synced at: 24 days ago - Pushed at: almost 2 years ago - Stars: 36 - Forks: 9

brian-team/brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

Language: Python - Size: 122 MB - Last synced at: 13 days ago - Pushed at: 5 months ago - Stars: 63 - Forks: 13

g4nesh/Sculpt

Licensable software to help model and reconstruct neurons and their functions. Work done based off of data and reconstructions from Harvard, Yale, and other academic institutions as well as open source data.

Language: Python - Size: 15.6 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

gifale95/NSD-synthetic

Code to reproduce the results from the NSD-synthetic data release paper.

Language: Python - Size: 5.98 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0

amathislab/DeepDraw

[eLife 2023] Code for "Contrasting action and posture coding with hierarchical deep neural network models of proprioception"

Language: Jupyter Notebook - Size: 10.9 MB - Last synced at: 25 days ago - Pushed at: 6 months ago - Stars: 13 - Forks: 2

C16Mftang/covariance-learning-PCNs

Recurrent predictive coding networks for associative memory employing covariance learning

Language: Jupyter Notebook - Size: 265 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0

KempnerInstitute/traveling-waves-integrate

Repository to create traveling waves integrate special information through time

Language: Jupyter Notebook - Size: 142 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 47 - Forks: 5

INM-6/multi-area-model

A large-scale spiking model of the vision-related areas of macaque cortex.

Language: Python - Size: 43.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 71 - Forks: 50

siplab-gt/cleo

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

Language: Python - Size: 78 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 16 - Forks: 0

ShahriarRezghi/Spyker

High-performance Spiking Neural Networks Library Written From Scratch with C++ and Python Interfaces.

Language: C++ - Size: 376 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 22 - Forks: 3

gifale95/eeg_encoding

Use DNNs to build encoding models of EEG visual responses.

Language: Python - Size: 1.49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 76 - Forks: 12

gifale95/algonauts_2023

Load and model the brain data of the Algonauts Project 2023 Challenge.

Language: Jupyter Notebook - Size: 272 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 1

fzenke/auryn

Auryn: A fast simulator for spiking neural networks with synaptic plasticity

Language: C++ - Size: 3.57 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 100 - Forks: 43

mrkrd/cochlear_nucleus

Computational models of the globular bushy cells in the ventral cochlear nucleus

Language: Python - Size: 205 KB - Last synced at: about 2 months ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

btel/python-in-neuroscience-tutorials

Collection of tutorials about methods of computational neuroscience using Python

Language: Jupyter Notebook - Size: 2.53 MB - Last synced at: about 1 month ago - Pushed at: over 8 years ago - Stars: 76 - Forks: 26

computational-neuroscience/Computational-Neuroscience-UW

Python scripts that supplement the Coursera Computational Neuroscience course by the University of Washington

Language: Jupyter Notebook - Size: 2.31 MB - Last synced at: about 1 month ago - Pushed at: almost 8 years ago - Stars: 136 - Forks: 61

Wondermongering/StochasticGutBrainModel

StochasticGutBrainModel is a computational simulation framework that explores the complex interactions between the gut microbiome, metabolites, hormones, and neural signaling in the gut-brain axis

Language: Python - Size: 24.4 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

EpistemologistIoneuroscientist/Ioneuroscience-Modeling

#Ioneuroscience-modeling=)Repository for code and data related to ion channel modeling and analysis in neuroscience. Tools and scripts for simulating and analyzing ion channel dynamics. Software for processing electrophysiological data.

Size: 6.84 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

mabdh/hopfield-network

🧠 Simulation of Hopfield Network on Web

Language: JavaScript - Size: 18.6 KB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

BlueBrain/eFEL 📦

Electrophys Feature Extraction Library

Language: Python - Size: 61.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 69 - Forks: 40

esi-neuroscience/syncopy

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

Language: Python - Size: 12 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 52 - Forks: 15

biosimulators/Biosimulators_pyNeuroML

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

Language: Python - Size: 2.38 MB - Last synced at: 13 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

norse/notebooks

Notebooks illustrating the use of Norse, a library for deep-learning with spiking neural networks.

Language: Jupyter Notebook - Size: 8.9 MB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 29 - Forks: 10

courtois-neuromod/algonauts_2025.competitors

Data and code for the Algonauts Project 2025 challenge.

Language: Jupyter Notebook - Size: 21.1 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 40 - Forks: 12

evan-kolberg/HALnalysis

Forked my project repo from Project HAL containing my research done with the Levin Lab @ Tufts University. Big thanks to Dr. Wesley Clawson, Nathan Wu, and Trevor Sullivan for their unparalleled guidance; big thanks to Mrs. Vandergoot, Mr. Gendels, and Mrs. Frank for their support as my research teachers.

Language: Jupyter Notebook - Size: 43.8 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0