NeoNeuron/neoneuron.github.io

Kai Chen's Personal Webpage.

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LCNS-SJTU/lcns-sjtu.github.io Fork of alshedivat/al-folio

Webpage of Lab of computational neuroscience @ Shanghai Jiao Tong University.

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jiaxiaogang/HELIX_THEORY

螺旋熵减理论

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druckmann-lab/nepr208

Course website for NEPR208: Computational module, 1st year students

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NACLab/ngc-learn

NGC-Learn: Neurobiological Systems Design and Simulation in Python

Language: Python - Size: 79.1 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 142 - Forks: 29

slinderman/ml4nd

Machine Learning Methods for Neural Data Analysis

Language: Jupyter Notebook - Size: 126 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 12 - Forks: 2

dkrawciw/CanardExplosionResearch_CompNeuroScience_CSM

We are researching Canard Explosions in our Computational Neuroscience class at the Colorado School of Mines. This Repository contains tests and functions for our results.

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jiaxiaogang/he4o

螺旋熵减系统

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C16Mftang/place-cell-pred-coding

Learning grid cells by predictive coding

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UHBiocomputation/UH-biocomputation-web

Repository for the UH Biocomputation group's website

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CONECT-INT/CONECT-INT.github.io

Source code for the website

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HMUNACHI/BrainWaveEncodingML

Modelling The Brain's Response To Natural Scenes In The Bottleneck Space.

Language: Python - Size: 979 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

mlprt/feedbax

Optimal feedback control + interventions, in JAX.

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brian-team/brian2

Brian is a free, open source simulator for spiking neural networks.

Language: Python - Size: 35.9 MB - Last synced at: 8 days ago - Pushed at: 10 days ago - Stars: 996 - Forks: 237

gifale95/RNC

Algorithms to investigate (through neural control) the representational relationships between univariate or multivariate in silico fMRI responses of multiple visual areas of the brain.

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peterajhgraham/peterajhgraham

Files for my GitHub Profile.

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NeuralEnsemble/neurotune

Package for fitting/optimization of NeuroML models

Language: Python - Size: 2.24 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 16 - Forks: 11

ChristianGaser/cat12

Computational Anatomy Toolbox for SPM12 or SPM25

Language: MATLAB - Size: 658 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 35 - Forks: 6

open-retina/open-retina

Collaborative retina modelling across datasets and species.

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braph-software/BRAPH-2

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

Language: MATLAB - Size: 1.1 GB - Last synced at: 8 days ago - Pushed at: 11 days ago - Stars: 46 - Forks: 13

gifale95/NEST

Trained encoding models to generate in silico neural responses for arbitrary stimuli.

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neurolib-dev/neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

Language: Python - Size: 57.5 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 430 - Forks: 89

davrot/pytutorial

Computational Neuroscience, Machine Learning and Python tutorials

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eselkin/awesome-computational-neuroscience

A list of schools and researchers in computational neuroscience

Size: 379 KB - Last synced at: 11 days ago - Pushed at: 9 months ago - Stars: 799 - Forks: 81

asoplata/open-science-resources

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

Size: 92.8 KB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 117 - Forks: 17

asoplata/open-computational-neuroscience-resources

A publicly-editable collection of open computational neuroscience resources

Size: 279 KB - Last synced at: 11 days ago - Pushed at: about 1 year ago - Stars: 593 - Forks: 90

Unlimited-Research-Cooperative/Bio-Silicon-Synergetic-Intelligence-System

Bio-Silicon Synergetic Intelligence System

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flehue/DoC_modulation

BOLD dynamical connectivity analysis of Disorders of Consciousness, and modeling of underlying causes using the Dynamic Mean field Whole-Brain model

Language: Python - Size: 116 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

genn-team/genn

GeNN is a GPU-enhanced Neuronal Network simulation environment based on code generation for Nvidia CUDA.

Language: C++ - Size: 246 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 252 - Forks: 65

Metaverse-Crowdsource/Complete-Neural-Signal-Analysis

Feature extraction and prediction of human neural signals, using chaos theory, dynamical systems theory, various physics/maths theories, RNN, CNN, transformers

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mrkrd/cochlea

Inner ear models for Python

Language: Python - Size: 5.2 MB - Last synced at: 14 days ago - Pushed at: 9 months ago - Stars: 111 - Forks: 43

ProjectPyRhO/PyRhO

A virtual optogenetics laboratory

Language: Python - Size: 3.8 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 9

brian-team/brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

Language: Python - Size: 122 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 63 - Forks: 13

NeuroML/Documentation

Source repository for NeuroML documentation.

Language: Jupyter Notebook - Size: 239 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 13 - Forks: 9

NSBLab/BrainEigenmodes

Code supporting 'Geometric constraints on human brain function'

Language: MATLAB - Size: 155 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 97 - Forks: 17

g4nesh/Sculpt

Licensable software to help model and reconstruct neurons and their functions. Work done based off of data and reconstructions from Harvard, Yale, and other academic institutions as well as open source data.

Language: Python - Size: 15.6 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 1 - Forks: 0

gifale95/NSD-synthetic

Code to reproduce the results from the NSD-synthetic data release paper.

Language: Python - Size: 5.98 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 3 - Forks: 0

burger-bro/computational-neuroscience-cookbook

This repository collects learning materials and sota resarch progress related to computational neuroscience.

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scidash/neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit

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C16Mftang/covariance-learning-PCNs

Recurrent predictive coding networks for associative memory employing covariance learning

Language: Jupyter Notebook - Size: 265 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 6 - Forks: 0

openbraininstitute/eFEL

Electrophys Feature Extraction Library

Language: Python - Size: 62.7 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0

KempnerInstitute/traveling-waves-integrate

Repository to create traveling waves integrate special information through time

Language: Jupyter Notebook - Size: 142 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 47 - Forks: 5

INM-6/multi-area-model

A large-scale spiking model of the vision-related areas of macaque cortex.

Language: Python - Size: 43.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 71 - Forks: 50

siplab-gt/cleo

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

Language: Python - Size: 71.4 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 16 - Forks: 0

ShahriarRezghi/Spyker

High-performance Spiking Neural Networks Library Written From Scratch with C++ and Python Interfaces.

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gifale95/eeg_encoding

Use DNNs to build encoding models of EEG visual responses.

Language: Python - Size: 1.49 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 76 - Forks: 12

gifale95/algonauts_2023

Load and model the brain data of the Algonauts Project 2023 Challenge.

Language: Jupyter Notebook - Size: 272 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 14 - Forks: 1

fzenke/auryn

Auryn: A fast simulator for spiking neural networks with synaptic plasticity

Language: C++ - Size: 3.57 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 100 - Forks: 43

mrkrd/cochlear_nucleus

Computational models of the globular bushy cells in the ventral cochlear nucleus

Language: Python - Size: 205 KB - Last synced at: 5 days ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

OpenSourceBrain/Documentation

Updated documentation for the Open Source Brain platform using Jupyter Book

Language: Shell - Size: 63.4 MB - Last synced at: 4 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 0

Wondermongering/StochasticGutBrainModel

StochasticGutBrainModel is a computational simulation framework that explores the complex interactions between the gut microbiome, metabolites, hormones, and neural signaling in the gut-brain axis

Language: Python - Size: 24.4 KB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

ArminBaz/SR-IS

Importance sampling de-biases the successor representation for a more general and efficient representation of the environment.

Language: Jupyter Notebook - Size: 110 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

EpistemologistIoneuroscientist/Ioneuroscience-Modeling

#Ioneuroscience-modeling=)Repository for code and data related to ion channel modeling and analysis in neuroscience. Tools and scripts for simulating and analyzing ion channel dynamics. Software for processing electrophysiological data.

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mabdh/hopfield-network

🧠 Simulation of Hopfield Network on Web

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BlueBrain/eFEL 📦

Electrophys Feature Extraction Library

Language: Python - Size: 61.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 69 - Forks: 40

BlueBrain/BluePyOpt 📦

Blue Brain Python Optimisation Library

Language: Python - Size: 57.5 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 211 - Forks: 100

esi-neuroscience/syncopy

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

Language: Python - Size: 12 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 52 - Forks: 15

andreabonvini/LastWeeksPotatoes

Personal blog.

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BrainCog-X/Brain-Cog

Brain-inspired Cognitive Intelligence Engine (BrainCog) is a brain-inspired spiking neural network based platform for Brain-inspired Artificial Intelligence and simulating brains at multiple scales. The long term goal of BrainCog is to provide a comprehensive theory and system to decode the mechanisms and principles of human intelligence and its evolution, and develop artificial brains for brain-inspired conscious living AI in future Human-AI symbiotic Society.

Language: Python - Size: 3.43 MB - Last synced at: about 2 months ago - Pushed at: 4 months ago - Stars: 489 - Forks: 77

biosimulators/Biosimulators_pyNeuroML

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

Language: Python - Size: 2.38 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

nandahkrishna/RNNReactivation

Code for "Sufficient conditions for offline reactivation in recurrent neural networks" (ICLR 2024)

Language: Python - Size: 34.2 KB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

norse/notebooks

Notebooks illustrating the use of Norse, a library for deep-learning with spiking neural networks.

Language: Jupyter Notebook - Size: 8.9 MB - Last synced at: 17 days ago - Pushed at: 10 months ago - Stars: 29 - Forks: 10

courtois-neuromod/algonauts_2025.competitors

Data and code for the Algonauts Project 2025 challenge.

Language: Jupyter Notebook - Size: 21.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 40 - Forks: 12

emer/leabra

Go implementation of Leabra algorithm for biologically-based models of cognition, based on emergent framework (with Python interface)

Language: Go - Size: 32.4 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 83 - Forks: 23

fracapuano/brainformer

A transformer-based approach to predicting MEG readings from EEG sensory inputs. "Deep Learning" @ MVA, 2024.

Language: Python - Size: 8.14 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

esther-poniatowski/multitask-context-dependent-behavior

Data analysis of neuronal recordings in naive and trained animals performing multiple tasks in active and passive attentional states

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evan-kolberg/HALnalysis

Forked my project repo from Project HAL containing my research done with the Levin Lab @ Tufts University. Big thanks to Dr. Wesley Clawson, Nathan Wu, and Trevor Sullivan for their unparalleled guidance; big thanks to Mrs. Vandergoot, Mr. Gendels, and Mrs. Frank for their support as my research teachers.

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danielathome19/pyorganoid

A Python package for the simulation of organoids for the purpose of studying Organoid Intelligence (OI) and Organoid Learning (OL).

Language: Python - Size: 7.44 MB - Last synced at: 9 days ago - Pushed at: 9 months ago - Stars: 5 - Forks: 0

chriski777/NSTAnalysis

Neural Spike Train Analysis

Language: Matlab - Size: 153 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 5 - Forks: 0

aliobaibk/nnamm

Data and codes supporting the manuscript "Dialogue mechanisms between astrocytic and neuronal networks: a whole-brain modelling approach" by Ali et al., 2025, PCBI.

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cknd/synchrony

investigating some dynamics of spiking neural networks

Language: Python - Size: 1.48 MB - Last synced at: 8 days ago - Pushed at: almost 5 years ago - Stars: 7 - Forks: 1

panchal-raj/Implementation-of-Infant-Visual-Vision Fork of sohanjs111/InfantVisualPerception

This project is developed under the Computational Visual Perception Course.

Language: Jupyter Notebook - Size: 514 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

OpenSourceBrain/OSBv2

An updated version of the Open Source Brain platform

Language: Python - Size: 53.9 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 12 - Forks: 6

shalemrajkumar/awesome-computational-neuroscience-resources Fork of analyticalmonk/awesome-neuroscience

A curated list of awesome computational neuroscience libraries, software and any content related to the domain. A forked repo from analyticalmonk.

Size: 204 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

openbraininstitute/BluePyEfe

BluePyEfe: Blue Brain Python E-feature extraction

Language: Python - Size: 7.93 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

rougier/CNCC-2020

Computational Neuroscience Crash Course (University of Bordeaux, 2020)

Language: Jupyter Notebook - Size: 19 MB - Last synced at: 1 day ago - Pushed at: almost 4 years ago - Stars: 50 - Forks: 6

synergetics/spectrum

Higher Order Spectrum Estimation toolkit

Language: Python - Size: 843 KB - Last synced at: 16 days ago - Pushed at: 7 months ago - Stars: 63 - Forks: 28

ContextLab/computational-neuroscience

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

Language: TeX - Size: 52 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 48 - Forks: 12

yavuzkaraca/Topographic-Projection-Sim

Computational topographic projection model via Eph/Ephrin interactions

Language: Python - Size: 1.85 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 1

NN4Neurosim/nn4n

Language: Python - Size: 5.16 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 23 - Forks: 0

BrosnanYuen/tt07-Neuromorphic-ASIC-with-96-Neurons

Neuromorphic ASIC with 96 neurons on Tiny Tapeout 7

Language: Verilog - Size: 8.1 MB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 8 - Forks: 0

alimotahharynia/memory-sequential-paradigm

A psychophysics task using sequential paradigm with bar stimuli to assess working memory performance.

Language: MATLAB - Size: 207 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

Tommy7414/E-I-connection-spiking-neural-model

A Brian2-based spiking neural network model for perceptual decision-making, featuring selective inhibition control and top-down modulation. The GUI supports real-time visualization and comprehensive analyses, including single-trial and multiple-trial performance metrics such as psychometric curves, reaction times (RT), and energy landscapes

Language: Python - Size: 37.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

trendinafrica/TReND-CaMinA

TReND school in Comp Neuro and ML

Language: Jupyter Notebook - Size: 82.6 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 18 - Forks: 61

vandal-uv/anarpy

AnarPy is a Python package to facilitate the simulation, analysis, and replication of several experiments using computational whole brain models. This package is developed and maintained by the Valparaíso Neural Dynamics Laboratory at Universidad de Valparaíso

Language: Python - Size: 141 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 2

5a7man/eeg_fConn

Python library to compute functional connectivity measures from EEG

Language: Python - Size: 20.5 KB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 3

oodebode/PRSEF-2024

Data and analysis code presented in: Are perceptual decisions influenced by working memory? PRSEF 2024

Language: MATLAB - Size: 640 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

jihandong/Computational-Neuroscience-UW

My notes and codes of UW's Computational Neuroscience in Coursera

Language: Python - Size: 10.9 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

yqiaorong/dream-viewer

Attempted using electroencephalogram (EEG) to decode visual dream content by leveraging an encoding model which generates EEG signals from deep neural network (DNN) feature maps of visual images.

Language: Python - Size: 129 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

C16Mftang/temporal-predictive-coding

Predictive coding networks for temporal prediction

Language: Python - Size: 55.9 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 5

NeuroWolff/Annemarie-Wolff-Codes

MATLAB and python codes for human EEG, fNIRS, eye tracking, ECG, sEEG, respiration and fMRI analysis.

Language: MATLAB - Size: 22.5 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0

junipertcy/functional-connectivity

Sensing the functional connectivity of the brain

Language: Python - Size: 3.7 MB - Last synced at: about 5 hours ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1

amathislab/DeepDraw

[eLife 2023] Code for "Contrasting action and posture coding with hierarchical deep neural network models of proprioception"

Language: Jupyter Notebook - Size: 10.8 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 12 - Forks: 2

NeelayS/speech_spike_signatures

Spiking neural networks (SNNs) for speech classification

Language: Python - Size: 4.88 MB - Last synced at: 17 days ago - Pushed at: about 3 years ago - Stars: 12 - Forks: 0

danielathome19/Pianoid-EEG-NN

A Bidirectional LSTM Network and EEG-Response Organoid for simulating neural responses to classical piano music.

Language: Python - Size: 4.11 GB - Last synced at: 6 days ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

amathislab/MyoChallengeAnalysis

[Neuron 2024] Analysis of Baoding ball policy from MyoChallenge at NeurIPS 2022

Language: Jupyter Notebook - Size: 687 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 6 - Forks: 0

payampiray/cbm

computational and brain/behavior modeling

Language: HTML - Size: 1.91 MB - Last synced at: 21 days ago - Pushed at: almost 4 years ago - Stars: 32 - Forks: 10

GoodhillLab/ZFLOW

Code for running CFD simulation of larval zebrafish, and MATLAB code for pre/postprocessing. Accompanies the preprint "Behavioral adaptation to changing energy constraints via altered frequency of movement selection" by T. Darveniza, S.I. Zhu, Z. Pujic, B. Sun, M. Levendosky, R. Wong, R. Agarwal, M. H. McCullough, G. J. Goodhill (2023)

Language: C++ - Size: 5.88 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1

ccnmaastricht/angorapy

Build embodied brain models with ease.

Language: Python - Size: 156 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 18 - Forks: 1

chaselab/chaselab.github.io Fork of mobeets/chaselab

lab website for Chase Lab at CMU

Language: HTML - Size: 51.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1