BlueBrain/MorphIO

A python and C++ library for reading and writing neuronal morphologies

Language: C++ - Size: 7.59 MB - Last synced: about 8 hours ago - Pushed: about 18 hours ago - Stars: 27 - Forks: 22

BlueBrain/BioExplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Language: C++ - Size: 439 MB - Last synced: about 22 hours ago - Pushed: about 23 hours ago - Stars: 62 - Forks: 8

dbbs-lab/arborize

A Python package that allows Arbor-like descriptions of cell models for NEURON.

Language: Python - Size: 212 KB - Last synced: about 17 hours ago - Pushed: about 23 hours ago - Stars: 1 - Forks: 3

Thraetaona/Innervator

Innervator: Hardware Acceleration for Artificial Neural Networks in FPGA using VHDL.

Language: VHDL - Size: 267 KB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 4 - Forks: 0

pr4deepr/GutAnalysisToolbox

Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.

Language: ImageJ Macro - Size: 371 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 4 - Forks: 3

obophenotype/brain_data_standards_ontologies

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

Language: Python - Size: 274 MB - Last synced: 9 days ago - Pushed: 19 days ago - Stars: 9 - Forks: 3

JaneliaSciComp/colormipsearch

Distributed Color Depth MIP Search

Language: Java - Size: 3.94 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 1

AllenInstitute/bmtk

Brain Modeling Toolkit

Language: Python - Size: 221 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 257 - Forks: 84

dnnsmnstrr/zettelkasten

My public slip box for notes on things I learned or personal thoughts and ideas 🗃️

Language: JavaScript - Size: 16.6 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 6 - Forks: 0

nrsc/nphys

R package for managing and analyzing neurophysiology data

Language: HTML - Size: 624 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 2 - Forks: 0

BlueBrain/Ultraliser

Reconstruction of watertight meshes and annotated volumes of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

Language: C++ - Size: 9.46 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 24 - Forks: 4

hgi0100/intelligent_perceptron

A trait that models a neuron better than a standard perceptron

Language: Rust - Size: 3.91 KB - Last synced: 8 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

swharden/pyABF

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

Language: Jupyter Notebook - Size: 224 MB - Last synced: 10 days ago - Pushed: 9 months ago - Stars: 97 - Forks: 33

BlueBrain/emodel-generalisation

Generalisation of electrical models of neurons with MCMC

Language: Python - Size: 17.3 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 3 - Forks: 2

HuuYuLong/Complementary-LIF

Offical Implementation of "CLIF: Complementary Leaky Integrate-and-Fire Neuron for Spiking Neural Networks" (ICML 2024)

Language: Python - Size: 319 KB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

iraikov/dentate Fork of soltesz-lab/dentate

Full-scale biophysical model of the dentate gyrus

Language: Jupyter Notebook - Size: 57.1 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

carboncopies/BrainGenix-NES

BrainGenix-NES aims to be a scalable, high-performance, fault-tolerant, distributed biological neuron emulation platform for whole-brain-emulation. [Note: Still in development]

Language: C++ - Size: 245 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 12 - Forks: 3

MrAnyx/Perceptron-Python-Explanation

Little Python implementation of the Perceptron

Language: Jupyter Notebook - Size: 110 KB - Last synced: 15 days ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

b0o/zettelkasten-public

Maddison's public Zettelkasten

Language: Markdown - Size: 20.5 KB - Last synced: 16 days ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

imvetri/artificial-intelligence

Insincere System design about building intelligence, based on neural fluid model. Still a draft and I'm gathering resources and design ideas. Modern AI is a fancy calculator. It cannot be a creator/creation. It cannot be a simulacra/simulation.

Size: 24.3 MB - Last synced: 16 days ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

john5934/Neuron_ASM

Weighted sum of a neuron in a neural net

Language: Assembly - Size: 23.4 KB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 0 - Forks: 0

cudmore/SanPy

SanPy is software for whole-cell current clamp analysis.

Language: Python - Size: 560 MB - Last synced: 18 days ago - Pushed: 22 days ago - Stars: 13 - Forks: 5

BlueBrain/BluePyEModel

Blue Brain Python Electrical Modeling Pipeline

Language: Python - Size: 31.5 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 3 - Forks: 4

mhemeryck/unipitt

Poll and push out event for unipi neuron platform

Language: Go - Size: 49.8 KB - Last synced: 23 days ago - Pushed: almost 3 years ago - Stars: 5 - Forks: 1

generic-matrix/Neuron

This is a neuron made using PHP -Reinforcement learning, weights and accuracy visualization

Language: PHP - Size: 236 KB - Last synced: 24 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

natverse/nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Language: R - Size: 60.6 MB - Last synced: about 2 hours ago - Pushed: 3 months ago - Stars: 60 - Forks: 25

ProjectPyRhO/PyRhO

A virtual optogenetics laboratory

Language: Python - Size: 3.8 MB - Last synced: 19 days ago - Pushed: 10 months ago - Stars: 34 - Forks: 7

yzx9/swcgeom

Neuron geometry library for swc format.

Language: Python - Size: 3.76 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 6 - Forks: 3

Trust-Anchor-Group/Community

Free Community Service that runs on any TAG Neuron(R). Allows anyone with a TAG ID to create posts and reply to posts. Viewing, linking to and browsing posts and topics is free for all.

Language: JavaScript - Size: 170 KB - Last synced: 27 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

realamirhe/awesome-computational-neuro-science

A curated list of awesome cns frameworks, libraries, and software + First class pure python Tutorial Series for Spiking Neural Networks 🔥

Language: Jupyter Notebook - Size: 16.2 MB - Last synced: 3 days ago - Pushed: about 2 years ago - Stars: 43 - Forks: 9

jordan-g/KCC2

NEURON model of inhibitory synaptic plasticity through KCC2 regulation.

Language: Python - Size: 336 KB - Last synced: about 1 month ago - Pushed: about 10 years ago - Stars: 0 - Forks: 0

BlueBrain/BlueCelluLab

Biologically detailed neural network simulations and analysis API

Language: Python - Size: 14.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 9

cyneuro/bmtool

A collection of scripts to assist with developing networks in BMTK (https://github.com/AllenInstitute/bmtk)

Language: Python - Size: 8.48 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 5

deangeckt/network_motifs

Analyzing Network Motifs with Python.

Language: Python - Size: 3.15 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

neuronsimulator/nrn

NEURON Simulator

Language: C++ - Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 352 - Forks: 113

navis-org/pymaid

Python library to interface with CATMAID servers. Fully interoperable with navis.

Language: Python - Size: 25.1 MB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 23 - Forks: 12

TUIASI-AC-enaki/flappy-bird-with-ai

Flappy Bird built using PyGame in which the user has the opportunity to compete with an AI.

Language: Python - Size: 1.45 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 2

RivuletStudio/rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Language: Python - Size: 1.21 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 64 - Forks: 17

SiddharthDhirde/Intro-to-Neural-Networks

Implement neural networks from scratch with Micrograd. Learn derivatives, neurons, layers, and more through step-by-step Jupyter notebooks

Language: Jupyter Notebook - Size: 2.63 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

obophenotype/bds-pipeline-config

Brain data standards ontologies building pipeline configuration

Language: Ruby - Size: 1.16 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 1

obophenotype/allen-neuron-types

Building an ontology of specialised neuron types from data - well supported terms may later migrate to CL.

Language: Jupyter Notebook - Size: 295 KB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 2

ContextLab/computational-neuroscience

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

Language: TeX - Size: 52 MB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 40 - Forks: 11

amaynez/Perceptron

Single Neuron Neural Network - Perceptron, tested with a linear classification problem.

Language: Python - Size: 27 MB - Last synced: about 2 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

ArtemKirsanov/BlenderSpike

A Blender add-on to bring animations from NEURON

Language: Python - Size: 62.1 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 107 - Forks: 19

BlueBrain/CoreNeuron 📦

Simulator optimized for large scale neural network simulations.

Language: C++ - Size: 40.8 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 133 - Forks: 37

jarosado0911/PythonNeuronMeshes

This repository is generating neuron mesh geometries from 1d Neuromorpho.org geometries.

Language: Jupyter Notebook - Size: 60.3 MB - Last synced: 2 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

mrkrd/spiral_ganglion

Auditory nerve fiber models for synaptic and electrical stimulation

Language: Python - Size: 195 KB - Last synced: 2 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 2

neuronlabs/neuron-extensions

Neuron Extensions contains extensions for the Golang Neuron framework.

Language: Go - Size: 867 KB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

akshayush/mobile_rating_prediction_PerceptronNeuron

Language: Jupyter Notebook - Size: 8.79 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

tresnjo/memory-landscape

A model of memory recalling in the human brain

Language: Python - Size: 14.6 KB - Last synced: 3 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

ssapir/NeuronQuickStart

A wrapper to common functionality to work with Neuron package (https://www.neuron.yale.edu/neuron/)

Language: AGS Script - Size: 832 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

srid/neuron-template

A template to get started with neuron

Language: Markdown - Size: 2.92 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 83 - Forks: 20

devbluecomet/neuron_aio

The repositories are organized using the monorepo model to keep the code on different ends centralized and unaffected, while making it as reusable as possible during the packaging and compilation process.

Language: TypeScript - Size: 24.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

CSDLLab/PyNeval

PyNeval, a toolbox for quantative analysis on neuron reconstruction result.

Language: Python - Size: 8.67 MB - Last synced: 9 days ago - Pushed: over 2 years ago - Stars: 14 - Forks: 2

LionelBergen/Bizhawk-NEAT-GameSolver-ML-AI

NEAT program which learns different SNES/NES games from the Bizhawk emulator

Language: Lua - Size: 26.9 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

iraikov/salt

Hybrid dynamical systems modeling.

Language: Scheme - Size: 424 KB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 5 - Forks: 0

bouromain/hippocampy

Toolboox for neurophysiology data analysis (electrophy and calcium imaging)

Language: Python - Size: 5.11 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 0

maktoobgar/neural_network

A project which can be used to visually train a neural network.

Language: GDScript - Size: 1.24 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

lauramedlock/sfo-model

SFO Neuron Model in JNeurophysiol

Size: 31.3 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

planetlambert/neuron

A reference implementation of the 1943 McCulloch and Pitts paper, A Logical Calculus of the Ideas Immanent in Nervous Activity

Size: 11.7 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

ModelDBRepository/2014998

Frequency-dependent pattern separation in a biophysical model of the dentate gyrus, (Singh et al., 2023)

Language: Python - Size: 73.2 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 2

MahdiyarMM/Memristive-Associative-Memory

HSPICE implementation of hybrid CMOS/Memristor BAM

Language: Roff - Size: 111 KB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 0

ZJEydt/CNeuron

CNeuron is a simple singular neural network neuron implementation in C, designed for easy integration into C projects.

Language: C - Size: 12.7 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

reedhhw/mynotes

Language: Markdown - Size: 1.51 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

mcrewcow/BaranovLab

Main projects during my current position in Petr Baranov Lab | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School

Language: Jupyter Notebook - Size: 64.9 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 1

antgon/msn-model

A computational model of a medium spiny neuron

Language: Python - Size: 207 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dazaizer0/Neogus-ANN

Own amateur-made artificial neural network for versatile applications in Python. With own interpreted apparent language for this library [in development]

Language: Tcl - Size: 31.8 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 0

ziemowit-s/morpho_neuro_rxd

Morphological model of neuron with RxD ionic diffusion. Based on NEURON.

Language: AGS Script - Size: 1.02 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

orena1/NEURON_tutorial

Tutorial for understanding how to use NEURON simulation environment

Language: AGS Script - Size: 8.01 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 27 - Forks: 8

atakehiro/Neural_Simulator-Colab

Demo code of neural simulators for Google Colab

Language: Jupyter Notebook - Size: 3.16 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

kr-g/pydataflow

a simple dataflow / workflow engine

Language: Python - Size: 98.6 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

SwaggerNiels/BlenderSpiky Fork of ArtemKirsanov/BlenderSpike

A Blender addon for visualizing your NEURON model, with customizable voltage traces.

Language: Python - Size: 156 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 1

Nabizzle/C-Fiber-simulation-code

A NERUON model to simulate the firing of a C-Fiber with a uniform and clustering of sodium channels.

Language: C - Size: 153 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1

applejag/notes-old 📦

My (old) personal wiki. Now using https://github.com/jilleJr/notes

Language: Markdown - Size: 2.57 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 1

PavlidisLab/neuroexpresso

:bar_chart: Gene expression in neuroexpresso database

Language: R - Size: 339 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 17 - Forks: 1

dmhashan/SimpleNeuron

Here implemented Simple Neuron using Hamming distance technique.

Language: Java - Size: 43.9 KB - Last synced: 8 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

neuronlabs/errors

Simple golang error handling with classification primitives.

Language: Go - Size: 37.1 KB - Last synced: 17 days ago - Pushed: almost 5 years ago - Stars: 6 - Forks: 1

amshenoy/hodgkin-huxley-playground

Modelling Hodgkin-Huxley neural response with dynamic input

Language: JavaScript - Size: 31.3 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

bom2013/Tic-tac-toe-ML

Software that plays Tic-tac-toe by using machine learning

Language: Python - Size: 18.6 KB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

FabioSmuu/artificial.js

This is an ongoing project intended to make it easier to use neural network creation, genetic algorithms, and other data science and machine learning skills.

Language: JavaScript - Size: 39.1 KB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

neurokernel/neurodriver

LPU class with support for various neuron and synapse models

Language: Jupyter Notebook - Size: 4.28 MB - Last synced: 3 days ago - Pushed: over 1 year ago - Stars: 8 - Forks: 12

royto/kalliope_neuron_webbrowser

A Kalliope neuron to open an URL in a browser

Language: Python - Size: 3.91 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

moritz-s/Pyoelectricity

Python skripts to analyse and simulate electrophysiology recordings and ephaptic coupling

Language: Jupyter Notebook - Size: 7.2 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

sg-s/xolotl

A MATLAB neuron simulator. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

Language: C++ - Size: 20.6 MB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 43 - Forks: 8

mohAhanin/Neural-networks-from-scratch

follow

Language: Jupyter Notebook - Size: 85.9 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

neuronsimulator/ringtest

Ring network model test to demonstrate the use of CoreNEURON

Language: Python - Size: 155 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 12 - Forks: 6

marcotulio956/neuron.modelingIC

Language: SystemVerilog - Size: 11.7 KB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

belopot/interactive-brain

Simulate the signals of brain.

Language: JavaScript - Size: 25 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 5 - Forks: 4

rubnsbarbosa/Perceptron

The Simple Perceptron is the simplest Artificial Neural Network Algorithm with a single neuron.

Language: Python - Size: 1.95 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

TinyChou/ElfBlockly

After continuous efforts 💪 I try to draw a conclusion for Blockly and Scratch customize development.That is the reason this repo come out.You can see the fantasy when blockly meets H5 canvas.

Language: JavaScript - Size: 22.5 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

danielmk/pydentate

pydentate is a biophysically realistic computational model of the dentate gyrus, a hippocampal brain region associated with memory formation and a computation called pattern separation.

Language: Python - Size: 30.2 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 6

BlueBrain/BlueNaaS-BrainAreaExperiment

BlueNaaS Brain Area Experiment

Language: Vue - Size: 2.17 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

mrkrd/cochlear_nucleus

Computational models of the globular bushy cells in the ventral cochlear nucleus

Language: Python - Size: 205 KB - Last synced: 5 days ago - Pushed: about 5 years ago - Stars: 3 - Forks: 0

MJAHMADEE/McCulloch-Pitts

McCulloch-Pitts Neuron

Language: Jupyter Notebook - Size: 2.41 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 0

fanantenana-dev/Neuzy

Neuzy - Population-based Neuron Modelling

Language: Python - Size: 2.33 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

justincpresley/go-bareml 📦

go-bareml: A bare-bones, from scratch, no external dependency, entirely Go-based Machine Learning Library which fully implements an Artificial Neural Network.

Language: Go - Size: 17.6 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

neuronlabs/neurogonesis

Golang Neuron framework generator.

Language: Go - Size: 207 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

MetaCell/NEURON-UI

NEURON User Interface

Language: AMPL - Size: 6.15 MB - Last synced: about 1 month ago - Pushed: almost 6 years ago - Stars: 16 - Forks: 4

tsukanov-as/neuron

experimental probabilistic model of neuron / probabilistic perceptron

Language: Go - Size: 335 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 0

kclick91/NeuroCode

A neuron built using object-oriented programming.

Language: Java - Size: 20.5 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0