GiacomoValliPhD/openhdemg

A powerful toolbox for the analysis of HD-EMG recordings

Language: Python - Size: 173 MB - Last synced: about 2 hours ago - Pushed: about 15 hours ago - Stars: 17 - Forks: 1

physiopy/phys2bids

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

Language: Python - Size: 57.6 MB - Last synced: about 15 hours ago - Pushed: about 17 hours ago - Stars: 56 - Forks: 43

ngebodh/GX_tES_EEG_Physio_Behavior

Supporting code for the GX Dataset

Language: HTML - Size: 25.8 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 13 - Forks: 9

Chaste/Chaste

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Language: C++ - Size: 319 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 116 - Forks: 55

swharden/pyABF

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

Language: Jupyter Notebook - Size: 224 MB - Last synced: 1 day ago - Pushed: 10 months ago - Stars: 98 - Forks: 33

neuropsychology/NeuroKit.py

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

Language: Python - Size: 224 MB - Last synced: 2 days ago - Pushed: about 4 years ago - Stars: 361 - Forks: 102

ScottHarris17/Bassoon

A python wrapper for developing, organizing, and deploying vision science experiments.

Language: Python - Size: 7 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 3 - Forks: 0

flintproject/Flint

A simulator for biological and physiological models

Language: C++ - Size: 116 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 6 - Forks: 3

AHuffmyer/EarlyLifeHistory_Energetics

Ontogenetic shifts in symbiotic and metabolic state in coral early life history

Language: HTML - Size: 466 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 5 - Forks: 1

neuropsychology/NeuroKit

NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

Language: Python - Size: 3.62 GB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 1,407 - Forks: 387

iwissemben/Sleep_deprivation_and_Heart_Rate_Variability-HRV

Study project to test the effect of sleep deprivation on HRV using the Polar ECG belt

Language: R - Size: 1.27 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

smoia/phys2cvr

python module to compute cerebrovascular reactivity mapping and other related maps

Language: Python - Size: 1 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 4 - Forks: 15

edwardlavender/rzss-flapper

Statistical modelling for Cole et al. (in prep). Physiological responses to capture, handling and tagging in flapper skate (Dipturus intermedius).

Language: R - Size: 540 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 1 - Forks: 0

plantphys/gsti

A project focused on the development of generalized spectra-trait models for the prediction of leaf photosynthetic capacity. This includes models focused on the prediction of leaf nitrogen, leaf mass per area (LMA), leaf water content (LWC), Vcmax, Jmax and dark respiration.

Language: R - Size: 973 MB - Last synced: 12 days ago - Pushed: 14 days ago - Stars: 6 - Forks: 0

Gabrock94/Pysiology

A Python package for physyological's signals processing

Language: Python - Size: 4.17 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 58 - Forks: 6

iandanforth/pymuscle

A motor unit based model of skeletal muscle and fatigue

Language: Python - Size: 4.02 MB - Last synced: 9 days ago - Pushed: over 5 years ago - Stars: 60 - Forks: 8

fedeci/PhysiologyQuiz

Language: Swift - Size: 216 KB - Last synced: 29 days ago - Pushed: 8 months ago - Stars: 0 - Forks: 1

MoTrPAC/MotrpacRatTrainingPhysiologyData

Data and analysis results for the MoTrPAC PASS1B rat physiology manuscript

Language: R - Size: 87.3 MB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

wfdb/wfdb.github.io

The WFDB website

Size: 318 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

ismorphism/DeepECG

ECG classification programs based on ML/DL methods

Language: Python - Size: 96.2 MB - Last synced: 30 days ago - Pushed: about 1 year ago - Stars: 232 - Forks: 84

devnithw/physio-modelling

Reports, code and other learning materials of BM2102 Modelling and Analysis of Physiological Systems

Size: 0 Bytes - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

moritzlindner/PatchR

An environment for handling and analysing electrophysiological (Patch Clamp) measurements in R

Language: R - Size: 1.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

FedericoTartarini/jsthermalcomfort

JavaScript package to calculate several thermal comfort indices (e.g., PMV, SET, two-node model, PHS)

Language: JavaScript - Size: 2.73 MB - Last synced: 29 days ago - Pushed: about 1 month ago - Stars: 4 - Forks: 1

SciML/CellMLToolkit.jl

CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

Language: Julia - Size: 1.91 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 53 - Forks: 14

johnjdavisiv/gap-app

Grade-adjusted pace (GAP) calculator for runners

Language: HTML - Size: 1.09 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

CWRUChielLab/importaxographx

Import AxoGraph X files into MATLAB

Language: MATLAB - Size: 18.6 KB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 1

gulraizchoudhary/grouped_horizontal_visibility_graph_entropy

Method to compute the probability of each motif type occurred in horizontal visibility graph

Language: Java - Size: 36.1 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

EOA-team/sentinel2_crop_traits

Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)

Language: Python - Size: 1.66 GB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 17 - Forks: 4

danmcduff/iphys-toolbox

A MATLAB toolbox for iPPG analysis. The toolbox includes implementations of commonly used methods.

Language: MATLAB - Size: 26.4 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 183 - Forks: 32

open-physiology/open-physiology-model-OLD 📦

Language: JavaScript - Size: 7.07 MB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 1

Carl-Firle/Aerosol_Study_Wind_Instruments

Data, figures and code concerning "Aerosol emission rates playing wind instruments – implementation within the assessment of Covid-19 infection risk"

Language: Mathematica - Size: 483 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

Nikeshbajaj/phyaat

PhyAAt: Physiology of Auditory Attention - Processing Library

Language: Python - Size: 44.9 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 8 - Forks: 6

LucaCerina/physio-cassette

Storage structures for signals, metadata and event annotations

Language: Python - Size: 134 KB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 6 - Forks: 0

ehsepulvedao/PatientEvoPhysio

Free open source Model Library designed to evaluate human physiological evolution in adulthood, childhood, neonatal and fetal life in the face of the occurrence of cardiovascular and respiratory anomalies or different clinical practices.

Language: Modelica - Size: 10.9 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

Academics-Hub/The-Human-Modelling-Project

A repository for the various facets of the whole body transport model.

Language: MATLAB - Size: 92.5 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

rjs360/schilder-lab

Schilder Lab website

Language: HTML - Size: 107 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

fboudry/EIH_Modeling_Classification

Research work about modeling the EIH phenomenon.

Language: R - Size: 203 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

yzerlaut/old_physion

Vision Physiology --- code for experimental setups and analysis pipelines to study cellular and network physiology in visual circuits --- :movie_camera: :wrench: :minidisc:

Language: Jupyter Notebook - Size: 51.2 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

EOA-team/PhenomEn

Repository for the research project "PhenomEn" (Swiss National Science Foundation) - PhD thesis Lukas Valentin Graf

Size: 37.1 KB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

aaron-schroeder/heartandsole

Python library for analysis of running data files

Language: Python - Size: 3.55 MB - Last synced: 27 days ago - Pushed: over 1 year ago - Stars: 12 - Forks: 3

lauramedlock/sfo-model

SFO Neuron Model in JNeurophysiol

Size: 31.3 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

FrankTN/ceteris-paribus

A physiological modeling framework

Language: Python - Size: 2.2 MB - Last synced: 5 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 1

forrestbao/pyeeg

Python + EEG/MEG = PyEEG

Language: Python - Size: 116 KB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 221 - Forks: 83

philschatz/anatomy-book

:orange_book: Anatomy and Physiology Textbook (Openstax)

Language: CSS - Size: 408 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 10 - Forks: 7

Scrappers-glitch/Medical-Archive

A medical reference for practical reasons

Language: Markdown - Size: 31.3 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

mikethesilb/llm-book-to-knowledge

The project is a jupyter notebook of the method I used to distill an entire physiology book into it's key points of knowledge. The book I chose is "The Muscle and Strength Training Pyramid v2.0" by Eric Helms. This work is part of an ongoing exploration I'm doing into the ability of LLMs (Large Language Models) to effectively distill knowledge.

Language: Jupyter Notebook - Size: 291 KB - Last synced: 6 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

UW-Laryngeal-Physiology-Lab/Spectral-HRM-Toolkit

Toolkit written by Austin Scholp. Primary function to to analyze high resolution manometry files using SPARC (Spectral Arc Length).

Language: LabVIEW - Size: 23.2 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

phys2/teaching-voltage-clamp

Simulates an electrophysiological whole-cell voltage-clamp experiment

Language: CSS - Size: 431 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

RealityBending/SussexPhysioProtocol

Sussex Psychophysiology Research Protocol (SuPREP)

Size: 328 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 3 - Forks: 2

EOA-team/sentinel2_crop_trait_timeseries

Sentinel-2 Crop Trait Timeseries Reconstruction using Physiological Dose-Response Curves

Language: Python - Size: 7.33 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 5 - Forks: 2

beatlab-mcmaster/.github

Brain/Body, Entrainment, Attention, & Timing Lab @McMaster University, led by Dr. Lauren Fink

Size: 1000 Bytes - Last synced: 4 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

UCSDPulmonaryImaging/MBWSim

Matlab Simulation of a simple 2-compartment lung for exploring Scond effects

Language: MATLAB - Size: 8.79 KB - Last synced: 9 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

pipetcpt/DallphinAtoM

Drugs with Allometry and Physiology Inside - Animal to huMan

Size: 18.5 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 6 - Forks: 0

mcade/rhythmic-breathing

A single page Elm app that helps you to control your breathing

Language: CSS - Size: 17.6 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

UCSFVisionResearch/SignalandNoise Fork of FeliceDunn/SignalandNoise

To analyze physiology data with power spectra of average and residuals.

Language: Matlab - Size: 3.89 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yishuwei/meegpipe Fork of meegpipe/meegpipe

meegpipe is a collection of MATLAB tools for managing electrophysiological signal processing workflow

Language: Matlab - Size: 16.6 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

yishuwei/CardyLine

Enables one-liner heart rate variability analysis directly from electrocardiogram

Language: Matlab - Size: 11.7 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

AHuffmyer/acropora_larval_metabolism

Metabolism and gene expression in Acropora pulchra larvae under elevated temperature in Moorea - October 2022

Size: 5.85 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

bccummings/acq-tools

Toolkit for analyzing physiologic data collected via Biopac AcqKnowledge software.

Language: Python - Size: 412 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 8 - Forks: 1

SMARTlab-Purdue/ros2-foxy-wearable-biosensors

This repository is a new wearable biosensors package for ROS2-Foxy. The ultimate goal of this repo is to expand the biosensors ecosystem in the Human-Robot Interaction (HRI) field. The package currently supports six wearable biosensors that can be used in HRI researches without behavioral constraints caused by limited hardware specifications (e.g., wired devices). We will keep updating this GitHub to support various wearable sensors on ROS 2 system. If you are interested in this project, please contact us.

Language: Python - Size: 7.45 MB - Last synced: 9 months ago - Pushed: almost 2 years ago - Stars: 12 - Forks: 2

HolgerHBurchert/Cardiac-Output-Estimation

Data and analyses code for the manuscript "Revisiting cardiac output estimated noninvasively from oxygen uptake during exercise: An exploratory hypothesis generating replication study"

Language: R - Size: 306 KB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 1

cremerlab/flux_parity

Complete history of the manuscript "An Optimal Regulation of Fluxes Dictates Microbial Growth In and Out of Steady-State"

Language: HTML - Size: 62.5 MB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 4 - Forks: 2

JayCrlt/Coral_Physiology

This repository corresponds to the study: Carlot et al. (2022). Scaling up calcification, respiration, and photosynthesis rates of six prominent coral taxa. Ecology and Evolution. https://doi.org/10.1002/ece3.8613

Language: R - Size: 106 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

ThomasMBury/ecg-dashboard

Tutorial for building a dashboard with Plotly Dash to stream ECG data from Physionet

Language: Python - Size: 2.67 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

ontox-hu/ontox-phymdos

Phymdos - the ONTOX Physiological maps documentation software

Language: R - Size: 3.73 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 1

CWRUChielLab/axographio

A Python package for reading and writing AxoGraph data files

Language: C++ - Size: 177 KB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

eoduniyi/viral.affective2022

🦋: Affective Computing and Ethics Fall 2022

Size: 679 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

phys2/teaching-ecg-towel

Simulates an electrocardiography teaching experiment.

Language: HTML - Size: 59.6 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

poshtkohi/computational-neuroscience

Mathematical modelling of microglial cells for the neuroscience community

Language: MATLAB - Size: 14.7 MB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

MedPocket/BRS

The Board Review Series (BRS) provides basic knowledge as it relates to clinical situations

Size: 109 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

embedded-sergey/FishResp-Rpackage

R package for aquatic respirometry [FishResp project]

Language: R - Size: 3.23 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

mastroalex/reflex

Physiological reflexes are the basis of the organism's survival. Such reflexes allow, in completely involuntary way of maintaining homeostasis. Variations in environmental variables or the appearance of a new signal induce a reflex response, by integration centers, aimed at restoring balance or avoiding dangerous situations. The following report applies the typical techniques of automatic controls to the analysis of the reflex from muscle strain and pupillary reflex, analyzing its behavior and stability. The stretch reflex is induced by excessive stretching of the muscle and therefore comes induced an autonomous contraction. The pupillary reflex predicts a change in the pupillary diameter in response to a change in ambient light. These reflexes are characterized by different systems and pathways but both can go into instability if, for different pathologies, the gain of the system increases excessively.

Language: MATLAB - Size: 15.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

Layton-Lab/nephron

Computational models for epithelial transport along the nephron.

Language: Python - Size: 205 KB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

glasgowneuro/attys-ep

Visually evoked potentials and P300 for the Attys (Windows/Linux)

Language: C++ - Size: 230 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 4

Pandey-Pankaj/ScienceOfMeditation

This contains all the resources related to meditation research including neuroscience, cognitive science, computational, machine learning

Size: 59.6 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

AceCentre/Snap-ReactionTest

Reaction test for human to find difference in set of images

Language: CoffeeScript - Size: 4.46 MB - Last synced: 10 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 2

MatteoGuardamagna/Hybrid_drive

A chronic microdrive combining tetrode arrays with silicon probes in freely moving mice

Size: 158 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

LeonardoLupori/arduinoProjects

A collection of various projects, including code, hardware and 3D models to make life easier in a neuroscience lab.

Language: C++ - Size: 600 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

award7/asl_analysis_pipeline

Various scripts (Bash, Matlab, Python) for processing ASL MRI data using AFNI, SPM, and FSL.

Language: Python - Size: 1.76 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

makes/bopra-cox

Analysis and reporting framework to study the relationship between cerebral tissue oximetry (rSO2) and mean arterial pressure (MAP).

Language: Jupyter Notebook - Size: 9.94 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

vianneydenis/stranger-things

Data and script to replicate analyses in Hsu et al. (Accepted)

Language: HTML - Size: 4.16 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

janhohenheim/physiology-download

Downloads Physiologie by Silbernagl as a single PDF

Language: Python - Size: 6.84 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

GingerDMD/gingerdmd.github.io

Summaries of individual presentations categorized by unit

Language: HTML - Size: 19 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

buendiaenr1/1RM-especifico

Repeticiones de diferentes ejercicios y sus pesos correspondientes para crear un modelo para estimar la intensidad de la fuerza en el plano muscular correspondiente.

Language: HTML - Size: 87.9 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

htwangtw/pyretroicor

Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.

Language: Python - Size: 53.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

chiq2045/muscle-memory

A C# application aimed at helping users to learn more about muscles in the human body

Language: C# - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

the-dr-lazy/capacitation-presentation

Spermatozoa Capacitation

Language: JavaScript - Size: 114 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

bwcont/Marine-Ecology

Sorte Lab - 199

Language: R - Size: 196 KB - Last synced: 6 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

acannistra/physioSDM

Inclusion of physiological data in species distribution models.

Language: Jupyter Notebook - Size: 46.5 MB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

joaodubas/phass

Physical assessment in Go

Language: Go - Size: 147 KB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

dgkontopoulos/Kontopoulos_et_al_temperature_normalisation_2017

Paper:

Language: Python - Size: 10.7 KB - Last synced: 4 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1