GitHub topics: genes

Repositories

nasa/GeneLab-Training

A repository for GeneLab Training documentation.

Language: HTML - Size: 274 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 41 - Forks: 21

guigolab/genome-annotation-tracker

Tracks Eukaryotic genome annotations (gff) from NCBI and Ensembl

Language: Shell - Size: 21.1 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

halbritter-lab/kidney-genetics-v1

Kidney-Genetics - database of kidney-related genes

Language: HTML - Size: 232 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 2 - Forks: 0

Sub-department-of-Genetics-ULSL/snp-analyser

🧬 A comprehensive bioinformatics tool for analyzing Single Nucleotide Polymorphisms (SNPs) and their effects on protein sequences with CLI and web interfaces.

Language: Python - Size: 23.4 KB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

nasa/GeneLab_Data_Processing

Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.

Language: Jupyter Notebook - Size: 233 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 90 - Forks: 56

Michael-Sebero/Y-Haplogroup-Predictor

W.I.P - This python script helps you predict your Y-haplogroup offline.

Language: Python - Size: 23.4 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 2 - Forks: 0

geneontology/go-annotation

This repository hosts the tracker for issues pertaining to GO annotations.

Language: Python - Size: 158 MB - Last synced at: 7 days ago - Pushed at: 13 days ago - Stars: 38 - Forks: 10

geneontology/amigo

AmiGO is the public interface for the Gene Ontology.

Language: JavaScript - Size: 179 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 31 - Forks: 17

marti-dotcom/multi-annotator

Automated variant annotation pipeline, and curated OMIM and ClinVar SNV datasets, developed by Martina Debnath.

Language: Python - Size: 138 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0

Saddeekhan/Flowering-time-genes-

This project provides a Python-based workflow for analyzing and visualizing flowering time gene expression from RNA-seq data. It includes preprocessing steps such as missing value imputation and normalization, followed by clustering and statistical summaries of expression patterns across developmental stages (M1–M8).

Language: Jupyter Notebook - Size: 496 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

ToledoEM/msigdf Fork of stephenturner/msigdf

Molecular Signatures Database (MSigDB) in a tidy data frame

Language: HTML - Size: 373 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 26 - Forks: 6

agmiron/AURACS

Aventure-se em "Crônicas da Nebulosa", um jogo educacional em C# que ensina programação através de uma narrativa interativa. 🐙

Language: C# - Size: 88.9 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

bridgedb/BridgeDbR Fork of egonw/BridgeDbR

Bioconductor R package for BridgeDb

Language: R - Size: 8.56 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 3

clingen-data-model/website-clinicalgenome-search

SEARCH V4 :: The aim of the project is to integrate ClinGen's internal data services and public external data services around a common user experience to ensure clinically relevant knowledge about genes and variants is available for use in precision medicine and research.

Language: PHP - Size: 281 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 3

kathteam/kath-v0.2-alpha

Kath is a user-friendly GUI tool designed for the in-depth analysis of gene variation data sourced from LOVD, GNOMAD, and CLINVAR databases.

Language: Python - Size: 43 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

Roshanshafiha/pathlinker

Language: Python - Size: 5.86 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

JeremyManwaring/Gene_Analysis

See whats in your genes

Language: Python - Size: 160 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

apriha/lineage

tools for genetic genealogy and the analysis of consumer DNA test results

Language: Python - Size: 1.11 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 169 - Forks: 26

deprekate/prfect

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

Language: Python - Size: 878 MB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 2

neurogenomics/orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Language: R - Size: 7.95 MB - Last synced at: 25 days ago - Pushed at: 6 months ago - Stars: 44 - Forks: 4

geneontology/helpdesk

The Gene Ontology Helpdesk

Size: 128 KB - Last synced at: 7 days ago - Pushed at: 7 months ago - Stars: 16 - Forks: 6

ssi-dk/ecoli_fbi

Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.

Language: Python - Size: 103 MB - Last synced at: 17 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

DBRetina/DBRetina

DBRetina python package

Language: Python - Size: 19.7 MB - Last synced at: 5 days ago - Pushed at: 4 months ago - Stars: 1 - Forks: 3

Omar-hk/GeneMutationClassification-V1

classification of genes based on their mutation frequency, predicting whether a gene is highly mutated or not. the Dataset from:https://portal.gdc.cancer.gov/analysis_page?app=MutationFrequencyApp&demoMode=true

Language: Jupyter Notebook - Size: 339 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

laurensvdwiel/metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

Language: Python - Size: 2.46 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 9 - Forks: 2

related-sciences/ensembl-genes

Extract the Ensembl genes catalog to simple tables

Language: Python - Size: 2.05 GB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 18 - Forks: 4

kyegomez/Prometheus

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

Language: Python - Size: 2.17 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 8 - Forks: 0

cfe-lab/CFEIntact

A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

Language: Python - Size: 6.2 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

dangreco/jean

Computational biology utility library for Rust featuring sequence alignment, genome annotation, and I/O of biological files

Language: Rust - Size: 1.96 MB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 0

yassineS/ithraa

Itraa: A gene-set enrichment pipeline for selection and gene-based analyses.

Language: Python - Size: 2.07 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

cajigas/granulifera_selection

This project studies the evolution of color polymorphism in the granular poison frog Oophaga granulifera

Language: Shell - Size: 116 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

alejandrogzi/bed2gtf

high-performance BED-to-GTF converter written in Rust

Language: Rust - Size: 165 KB - Last synced at: 20 days ago - Pushed at: 10 months ago - Stars: 15 - Forks: 0

samuel-oldra/Monografia

🎓 Monografia / TCC / Sistemas de Informação

Language: TeX - Size: 11.9 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 0

nasa/GeneLab_RNASeq_Workflow

Nextflow implementation of the GeneLab bulk RNASeq data processing pipelines.

Size: 1.93 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 2

BioJulia/GenomicAnnotations.jl

Language: Julia - Size: 5.03 MB - Last synced at: 13 days ago - Pushed at: 6 months ago - Stars: 16 - Forks: 4

abhijeetsingh1704/REDigest

REDigest: a Python GUI for In-Silico Restriction Digestion Analysis for Gene or Complete Genome Sequences

Language: Python - Size: 347 KB - Last synced at: 5 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 3

dhimmel/disgenet

Processing the DisGeNET database of disease–gene association

Language: Jupyter Notebook - Size: 29.3 MB - Last synced at: 5 months ago - Pushed at: over 9 years ago - Stars: 16 - Forks: 4

rouni001/Differential-Velocity

Python methods for computing Differential Velocity

Language: Python - Size: 12.7 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

AllenInstitute/biomolvec

Notebooks and scripts used for the Nautilex Hackathon

Language: HTML - Size: 8.29 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

Michael-Sebero/Genetic-Trait-Detector

This python script detects known traits in raw human genetic data.

Language: Python - Size: 86.9 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 33 - Forks: 2

mantvydasdeltuva/kath Fork of Strexas/kath

kath is a user-friendly GUI tool designed for the in-depth analysis of gene variation data sourced from LOVD, GNOMAD, and CLINVAR databases.

Language: Python - Size: 39.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 4 - Forks: 1

pbagos/mage

MAGE :: Meta-Analysis of Gene Expression

Language: Python - Size: 7.05 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 8 - Forks: 0

dhimmel/gene-ontology

User-friendly Gene Ontology annotations

Language: Jupyter Notebook - Size: 682 MB - Last synced at: 5 months ago - Pushed at: 9 months ago - Stars: 7 - Forks: 7

Darcy220606/AMPcombi

AMPcombi parses and filters results from AMP prediction tools

Language: Python - Size: 198 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 6 - Forks: 1

omics-datascience/BioAPI

A powerful abstraction of gene databases

Language: Python - Size: 13.2 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 5 - Forks: 0

samuel-oldra/BioNet

🎓 BioNet / TCC / Sistemas de Informação

Language: PHP - Size: 238 KB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0

robertaboukhalil/oct4th.js 📦

Web app for converting CSV/TSV files to Excel spreadsheets without mangling gene names

Language: Svelte - Size: 1.35 MB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

tomdstanton/GetAlleles

Extract alleles from genome assemblies

Language: Python - Size: 66.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 2

sethcg/NCBI-Gene-Finder

This is a desktop app. It takes protein accession numbers from a spreadsheet and gets the related NCBI gene information.

Language: TypeScript - Size: 111 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

icic-uns-conicet/PTC-GeneExpAnalysis

Code related to article "Papillary Thyroid Carcinoma: A thorough Bioinformatic Analysis of Gene Expression and Clinical data"

Language: R - Size: 61.2 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

dhimmel/het.io-dag-data

Data backend for http://het.io/disease-genes

Size: 209 MB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 2

GirkovArpa/genetic-origins-heatmap

Use your DNA data (e.g. from 23andMe) to paint a global heatmap of your origins.

Language: JavaScript - Size: 3.73 MB - Last synced at: 5 months ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 1

csdevignes/metabo-assistant

Fine tuning of Mistral model to guess metabolic pathway involved, based on list of genes and compounds

Language: Python - Size: 7.29 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

kvietcong/genetic-modeling

Genetic Modeling Research Project

Language: JavaScript - Size: 336 KB - Last synced at: 11 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

alaamokbel/MeningealTransciptome Fork of danielshapiro1/MeningealTransciptome

Includes UMAP clustering and labeling of single cell data (R code) - scRNASeq_seurat_code_103122.R

Size: 43 KB - Last synced at: 8 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

up202304593/Trabalho-Bioinform-tica

Neste repositório encontra-se o trabalho de Bioinformática de Beatriz Moreira, Daniela Leitão e Gonçalo Cruz.

Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

antonkulaga/genotations

A small library to work with ensembl and other annotations in python

Language: Python - Size: 3.65 MB - Last synced at: 10 days ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0

zjwinn/HaploCatcher

An R package for inferring Haplotypes from high-density, non-targeted genotyping platforms

Language: R - Size: 1.26 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

twbattaglia/RNAseq-workflow

A repository for setting up a RNAseq workflow

Language: R - Size: 3.67 MB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 381 - Forks: 176

dhimmel/ppi

Compiling human protein–protein interactions

Language: Jupyter Notebook - Size: 7.84 MB - Last synced at: 4 months ago - Pushed at: over 9 years ago - Stars: 3 - Forks: 4

urmi-21/COVID-DEA

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

Language: R - Size: 446 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1

AkshayRaul/0-1-Knapsack-Genetic-Algorithm

0/1 Knapsack using Genetic Algorithm written in Java

Language: Java - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 2

RobinPetit/pynteractome

pynteractome is a Python package for interactome-based analyses

Language: Python - Size: 5.75 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 2 - Forks: 0

Bluestars1/BMI520-Autism-Genes

This repository is on Autism

Language: Jupyter Notebook - Size: 13.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

jules552/ml-project-2-genelipids Fork of CS-433/ml-project-2-genelipids

Predicting lipid abundance in a murine brain section from spatial gene expression

Language: Jupyter Notebook - Size: 308 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

gaarangoa/deeparg2.0

deepARG using deep semantic representation

Language: Python - Size: 161 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 4

Gagniuc/PromKappa-1.0-makes-Objective-Digital-Stains

PromKappa 1.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns).

Language: Visual Basic 6.0 - Size: 8.55 MB - Last synced at: 6 months ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 2

Gagniuc/PromKappa-3.0-Objective-Digital-Stains-in-VB6

PromKappa 3.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns). The main output of the application consists of a series of images that are saved in the 'chart' (or 'chart_comp') folder and which can be later analyzed using different methods.

Language: HTML - Size: 6.85 MB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 1