nextstrain/nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Language: TypeScript - Size: 57.1 MB - Last synced: about 17 hours ago - Pushed: 1 day ago - Stars: 200 - Forks: 57

fomightez/sequencework

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Language: Python - Size: 3.58 MB - Last synced: about 13 hours ago - Pushed: 1 day ago - Stars: 24 - Forks: 4

stupornova33/MiSiPi.RNA

Characterization of small RNA pathways

Language: R - Size: 3.86 MB - Last synced: 13 minutes ago - Pushed: 1 day ago - Stars: 1 - Forks: 0

tzok/eltetrado

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

Language: Python - Size: 3.05 MB - Last synced: about 19 hours ago - Pushed: 1 day ago - Stars: 17 - Forks: 3

GEC-git/AptaMat

Python application to compare ssNa secondary structures

Language: Python - Size: 453 KB - Last synced: 1 day ago - Pushed: 7 months ago - Stars: 3 - Forks: 0

nf-core/rnafusion

RNA-seq analysis pipeline for detection of gene-fusions

Language: Nextflow - Size: 18.6 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 130 - Forks: 89

fryzjergda/DesiRNA

State of the art software for RNA sequence design. The first to solve the Eterna benchmark!

Language: Python - Size: 15.2 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 3 - Forks: 1

popitsch/rnalib

rnalib: a python-based transcriptomics library

Language: Jupyter Notebook - Size: 327 MB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 1 - Forks: 0

nf-core/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Language: Nextflow - Size: 64.1 MB - Last synced: 1 day ago - Pushed: 3 days ago - Stars: 787 - Forks: 653

a-r-j/graphein

Protein Graph Library

Language: Jupyter Notebook - Size: 87.8 MB - Last synced: 2 days ago - Pushed: 12 days ago - Stars: 987 - Forks: 122

biocorecrg/MOP2

Master of Pores 2

Language: Nextflow - Size: 209 MB - Last synced: 2 days ago - Pushed: 6 months ago - Stars: 22 - Forks: 7

eternagame/eternagame.org

Website for the Eterna citizen science game

Language: Vue - Size: 33.5 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 19 - Forks: 18

KwatMDPhD/GSEA.jl

The official command-line program for gene-set-enrichment analysis (GSEA) 🏔️

Language: Julia - Size: 180 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 21 - Forks: 2

RNAcentral/rnacentral-webcode

RNAcentral website source code

Language: Python - Size: 38.9 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 29 - Forks: 8

jrguignan/Redes_Neuronales-from_scratch

Repositorio donde programo varias redes neuronales artifificiales desde cero

Language: Jupyter Notebook - Size: 602 KB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

nf-core/nascent

Nascent Transcription Processing Pipeline

Language: Nextflow - Size: 7.89 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 13 - Forks: 10

nf-core/isoseq

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Language: Nextflow - Size: 4.76 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 23 - Forks: 11

nf-core/hlatyping

Precision HLA typing from next-generation sequencing data

Language: Nextflow - Size: 39.3 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 52 - Forks: 28

nf-core/rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Language: Nextflow - Size: 160 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 33 - Forks: 21

BGSU-RNA/RNA-3D-Hub

Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas

Language: JavaScript - Size: 22 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 2 - Forks: 1

mmagnus/rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

Language: Jupyter Notebook - Size: 114 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 138 - Forks: 42

y9c/pseudoU-BIDseq

🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)

Language: Python - Size: 11.6 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 11 - Forks: 2

gitHBDX/TransfoRNA

TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy

Language: Python - Size: 308 KB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 20 - Forks: 1

cgoliver/rnaglib

Datasets and analysis tools for RNA 3D and 2.5D structures.

Language: Python - Size: 101 MB - Last synced: about 2 hours ago - Pushed: about 14 hours ago - Stars: 11 - Forks: 1

Fraternalilab/POPScomp

Solvent Accessible Surface Areas of Biomolecules and their Complexes

Language: C - Size: 5.97 MB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 14 - Forks: 3

Lattice-Automation/seqviz

a JavaScript DNA, RNA, and protein sequence viewer

Language: TypeScript - Size: 112 MB - Last synced: 10 days ago - Pushed: about 1 month ago - Stars: 213 - Forks: 48

Aavache/awesome-genetic-ai-papers

Recent awesome AI papers about genomics.

Size: 9.77 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

BackofenLab/IntaRNA

Efficient target prediction incorporating accessibility of interaction sites

Language: C++ - Size: 8.08 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 44 - Forks: 27

Rhogger/Toxicity-Classifier-Comments

Atividade prática de Redes Neurais

Language: HTML - Size: 61.7 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

whl-usc/whl-usc.github.io

Crosslinking-based RNA Interactomes and Structuromes

Language: HTML - Size: 1.69 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

Gagniuc/Sequence-Logos-using-logarithms

Sequence Logos using logarithms is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Language: HTML - Size: 44.9 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

Gagniuc/Simple-JS-implementation-of-Objective-Digital-Stains

Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: HTML - Size: 125 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Sequence-Logo-relative-style-with-axes

Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Language: HTML - Size: 264 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 3 - Forks: 0

Gagniuc/Sequence-Logo-block-style-with-axes

Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

Language: HTML - Size: 279 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Ordered-Sequence-Logo-based-on-existing-matrices

Ordered Sequence Logo based on existing matrices is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as html.

Language: HTML - Size: 53.7 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Objective-Digital-Stains-in-PHP

This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.

Language: PHP - Size: 58.6 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/Information-content-vs-percentage

This is a scanner that produces two types of signals. The two signals are calculated from the content of a sliding window. One signal is represented by the self-sequence alignment values and the other is represented by the relative frequency values of Cplus G letters.

Language: HTML - Size: 154 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/3D-Objective-Digital-Stains-local-frequency

A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS uses the global frequency of symbols (A, T/U, C, G) from the input sequence to calculate the local frequency of these symbols from a sliding window.

Language: HTML - Size: 22.5 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/3D-Objective-Digital-Stains

A 3D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window. In the 3D version, the overlapping values (similar sliding windows) are represented by a gradient from black to red.

Language: HTML - Size: 19.5 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Gagniuc/2D-Objective-Digital-Stains

A 2D Objective Digital Stain is able to show the information structure of a DNA or RNA sequence in a graphical manner. In this case, the ODS is computed using the local frequency of the symbols from a sliding window.

Language: HTML - Size: 15.6 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

Arty40m/nskit

RNA/DNA secondary structure library for processing it as a graph, reading and writing

Language: Python - Size: 178 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 3 - Forks: 1

TurowskiLab/trxtools

Tools to study transcription

Language: Python - Size: 3.69 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 2 - Forks: 0

rnajena/RNAswarm

RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

Language: Python - Size: 18.9 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 1

lbcb-sci/RiNALMo

RiboNucleic Acid (RNA) Language Model

Language: Python - Size: 326 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 21 - Forks: 3

HosnaJabbari/HFold

RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding

Language: C - Size: 5.69 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 0 - Forks: 4

chenkenbio/SpliceBERT

Primary RNA sequence model

Language: Python - Size: 10.7 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 18 - Forks: 3

novoalab/modPhred

modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data

Language: Python - Size: 47.9 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 13 - Forks: 1

seanpm2001/RNAssistant

A computer assistant software kit for hospitals and medical centers to help with an array of cases.

Language: C - Size: 349 KB - Last synced: 18 days ago - Pushed: over 2 years ago - Stars: 2 - Forks: 2

Gagniuc/Visual-Sequence-Alignment-in-VB6

This highly visual and responsive VB6 application is an implementation of the global sequence alignment algorithm. It allows the modification of the alignment parameters (match, mismatch, gap), and it shows the pairwise alignment as well as the score matrix in real time.

Language: Visual Basic 6.0 - Size: 7.26 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 8 - Forks: 2

Gagniuc/Simple-sequence-alignment-in-VB6

This highly responsive VB6 application is an implementation of the global sequence alignment algorithm. It allows the modification of the alignment parameters (match, mismatch, gap), and it shows the pairwise alignment as well as the score matrix in real time. The purpose of it is to seeks the optimal alignment between two text sequences.

Language: Visual Basic 6.0 - Size: 4.31 MB - Last synced: 14 days ago - Pushed: over 1 year ago - Stars: 6 - Forks: 2

jakobilab/circhemy

Convert and query IDs of circular RNAs from many different databases

Language: Python - Size: 317 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 0 - Forks: 0

shashwat9kumar/RNA_Sequencing_And_Genome_Analysis

A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence

Language: C++ - Size: 4.47 MB - Last synced: 20 days ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2

atfrank/uCS-BME

Framework for Using Unassigned 2D NMR Chemical Shifts to Model RNA Secondary Structure

Language: Jupyter Notebook - Size: 95.1 MB - Last synced: 20 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

Ibvt/RNAnue

RNAnue

Language: C++ - Size: 455 KB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 7 - Forks: 3

y9c/m5C-UBSseq

Ultrafast bisulfite

Language: Python - Size: 20.5 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 1

eternagame/EternaBrain

Deep learning to solve RNA design puzzles

Language: Python - Size: 111 MB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 19 - Forks: 11

bgruening/galaxytools

:microscope::books: Galaxy Tool wrappers

Language: HTML - Size: 494 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 113 - Forks: 214

HosnaJabbari/Iterative-HFold

RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding

Language: C++ - Size: 5.75 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 3 - Forks: 4

lilit-nersisyan/fivepseq

An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment files to describe the distribution of 5′ endpoints of reads relative to translation start and stop sites, as well as relative to amino acids or codons. It also computes frame preference of 5′ endpoint distribution and captures periodicity patterns.

Language: Python - Size: 2.13 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 5 - Forks: 2

HKU-BAL/Clair3-RNA

Clair3-RNA - a long-read small variant caller for RNA sequencing data

Language: Python - Size: 327 KB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 7 - Forks: 0

qbicsoftware-archive/rnamapping

RNAseq workflow

Language: Python - Size: 26.4 KB - Last synced: 28 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/qbic-workflow-epitopeprediction

Epitope prediction workflow based on FRED.

Language: Python - Size: 2.93 KB - Last synced: 28 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/optitype-workflow

Language: Python - Size: 18.6 KB - Last synced: 28 days ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

qbicsoftware-archive/ngsqc

Quality Control on fastq files

Language: Python - Size: 4.88 KB - Last synced: 28 days ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/merge-NGSdata-workflow

Workflow scripts for merging NGS raw data (lanes)

Language: Python - Size: 1000 Bytes - Last synced: 28 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/epaa-workflow

Language: Python - Size: 24.4 KB - Last synced: 28 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

qbicsoftware-archive/differentialexpression-analysis-workflow

Differential expression analysis using DESeq2

Language: R - Size: 6.84 KB - Last synced: 28 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

Dpbm/dna-quantum

RNA to DNA using quantum computing

Language: Jupyter Notebook - Size: 60.5 KB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

adnaniazi/tailfindr

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

Language: R - Size: 18.6 MB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 49 - Forks: 15

FelixErnst/Structstrings

:package: Structstrings: implementation of Biostrings to work with dot bracket annotations

Language: R - Size: 374 KB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 4 - Forks: 0

fjossinet/RNArtist

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

Language: Kotlin - Size: 31.7 MB - Last synced: 22 days ago - Pushed: 6 months ago - Stars: 153 - Forks: 10

BVU-BILSAB/DiMA

A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.

Language: Rust - Size: 9.57 MB - Last synced: 13 days ago - Pushed: 12 months ago - Stars: 7 - Forks: 1

1ytic/warp-rna

Recurrent Neural Aligner

Language: Python - Size: 71.3 KB - Last synced: 18 days ago - Pushed: about 4 years ago - Stars: 47 - Forks: 6

eggzilla/GCC_2017_The_RNA_Workbench

RNA workbench presentation, Galaxy Community Conference 2017, Montpellier France

Language: TeX - Size: 26.5 MB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1

dweb0/protein-translate

Translate nucleotide sequence (dna or rna) to protein.

Language: Rust - Size: 613 KB - Last synced: 7 days ago - Pushed: almost 5 years ago - Stars: 6 - Forks: 0

RNA-FRETools/rosettascripts

Setup and running scripts for RNA modeling with Rosetta (mirror of github.com/fdsteffen/rosettascripts)

Language: Python - Size: 328 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

moshi4/pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

Language: Python - Size: 21.1 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 7 - Forks: 0

tzok/mcq4structures

A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).

Language: Java - Size: 40.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 5

srnas/barnaba

Analyse Nucleic Acids Structure and Simulations with baRNAba

Language: Jupyter Notebook - Size: 42.1 MB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 34 - Forks: 15

filipsPL/annapurna

AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.

Language: Python - Size: 278 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 19 - Forks: 5

ga4gh/ga4gh-server 📦

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

Language: Python - Size: 10.1 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 97 - Forks: 93

Gagniuc/Bioinformatics-Algorithms-in-JavaScript

These Bioinformatics HTML5/JS files accompany the book entitled: Algorithms in Bioinformatics: Theory and Implementation, and they are compatible with all internet browsers. These algorithms include more than 120 open-source implementations that describe many known or novel algorithms in Bioinformatics.

Language: HTML - Size: 1000 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 7 - Forks: 3

FelixErnst/RNAmodR.AlkAnilineSeq

:package: RNAmodR.AlkAnilineSeq: detection of m7G, m3C and D modification by AlkAnilineSeq

Language: R - Size: 1.89 MB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

PacificBiosciences/IsoSeq

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Size: 13.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 178 - Forks: 62

ViennaRNA/drforna

Interactive visualization of cotranscriptional folding

Language: JavaScript - Size: 19.1 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 6 - Forks: 2

RNAcentral/R2DT

Visualise RNA secondary structure in consistent, reproducible and recognisable layouts

Language: PostScript - Size: 142 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 57 - Forks: 10

janpaulpl/RNAfoldml

An OCaml package for predicting RNA secondary structure

Language: HTML - Size: 4.97 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 0

nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

Language: Python - Size: 6.06 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

comprna/CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

Language: C++ - Size: 50 MB - Last synced: 27 days ago - Pushed: 12 months ago - Stars: 24 - Forks: 2

FelixErnst/RNAmodR

:package: RNAmodR: detection of post-transcriptional RNA modifications based on HTS data

Language: R - Size: 92 MB - Last synced: 7 days ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

yikunpku/RNA-MSM

RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.

Language: Python - Size: 13.2 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 35 - Forks: 3

HussainAther/dnapacman

waka waka

Language: Python - Size: 213 KB - Last synced: 2 months ago - Pushed: about 3 years ago - Stars: 15 - Forks: 1

aristoteleo/dynamo-notebooks

Tutorials of Dynamo usage cases and code to reproduce the manuscript

Language: Jupyter Notebook - Size: 292 MB - Last synced: 2 months ago - Pushed: about 2 years ago - Stars: 6 - Forks: 4

mcrewcow/ChaginLab

Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet

Language: Jupyter Notebook - Size: 23.9 MB - Last synced: 2 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 1

NEKERAFA/AA 📦

Repositorio de Aprendizaje Automático

Language: Matlab - Size: 255 KB - Last synced: 2 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

RNAcentral/rnacentral-sequence-search-embed

Embeddable react component for RNA sequence search.

Language: JavaScript - Size: 46.6 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 5 - Forks: 1

GoekeLab/xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

Language: Python - Size: 4.96 MB - Last synced: 2 days ago - Pushed: 17 days ago - Stars: 127 - Forks: 22

StatBiomed/UniTVelo

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

Language: Jupyter Notebook - Size: 20.2 MB - Last synced: about 2 months ago - Pushed: 9 months ago - Stars: 22 - Forks: 9

BGSU-RNA/fr3d-python

Python implementation of the FR3D software for searching and annotating RNA 3D structures

Language: Python - Size: 32 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 15 - Forks: 9

nf-core/lncpipe Fork of likelet/LncPipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Language: Nextflow - Size: 9.05 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 30 - Forks: 16