GitHub topics: rna-secondary-structure-prediction
febos/SQUARNA
RNA secondary structure prediction tool
Language: Jupyter Notebook - Size: 162 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 2

febos/SQUARNA-data
SQUARNA benchmark data
Language: Jupyter Notebook - Size: 105 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

mxfold/mxfold2
MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
Language: Python - Size: 13.9 MB - Last synced at: 23 days ago - Pushed at: 2 months ago - Stars: 131 - Forks: 31

marcom/ViennaRNA.jl
Julia interface to ViennaRNA for RNA structure prediction and analysis
Language: Julia - Size: 328 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 22 - Forks: 1

marcom/FoldRNA.jl
Nucleic acid secondary structure prediction and analysis
Language: Julia - Size: 118 KB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 5 - Forks: 1

adp-multi/adp-multi
Prototype of ADP for MCFL (multiple context-free languages)
Language: Haskell - Size: 271 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 2

marcom/RNAstructure.jl
Julia interface to the RNAstructure program suite for RNA structure prediction and analysis
Language: Julia - Size: 89.8 KB - Last synced at: 14 days ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 1

jaswindersingh2/SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
Language: Perl - Size: 6.82 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 81 - Forks: 30

EnbinYang/GCNfold
GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction
Language: Python - Size: 27.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0

Debapriya-Tula/RNA_sequence
Predicting the secondary structure of RNA
Language: Python - Size: 911 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
