Data

Tools

Indexes

Applications

Experiments

Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: pseudoknot-base-pairs

jaswindersingh2/SPOT-RNA2

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

Language: Perl - Size: 185 MB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 25 - Forks: 8

TakumiOtagaki/RNApseudoknotExtractor

PseudoKnot Extraction from RNA pdb file based on pseudoknot-free-layer decomposition

Language: PostScript - Size: 1.01 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

jaswindersingh2/RNAcmap

A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

Language: Python - Size: 475 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 2

jaswindersingh2/SPOT-RNA

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

Language: Perl - Size: 6.82 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 81 - Forks: 30

Related Keywords
pseudoknot-base-pairs 4 canonical-base-pairs 3 deep-learning 2 direct-coupling-analysis 2 lone-pairs 2 rna 2 non-canonical-base-pairs 2 rna-secondary-structure 2 transfer-learning 2 multiplets-base-pairs 1 machine-learning 1 ensemble-model 1 bprna-dataset 1 blstm-neural-networks 1 tertiary-interactions 1 spot-rna 1 rnafold 1 noncanonical-base-pairs 1 pdb-dataset 1 resnet 1 rna-secondary-structure-prediction 1 rna-structural-analysis 1 rna-structure 1 rna-structure-motifs 1 tensorflow 1 rna-seconday-structure 1 rna-contact-prediction 1 plmc 1 msa 1 mf-dca 1 infernal 1 gremlin 1 evolutionary-couplings 1 end-to-end-pipeline 1 blastn 1 visualization 1 spot-rna2 1 multiple-sequence-alignment 1 homologous-sequence 1 evolutionary-information 1 base-triples 1