structure-prediction 44 bioinformatics 10 deep-learning 9 machine-learning 9 protein-structure 7 rna 6 structural-biology 5 computational-chemistry 5 alignment 4 pytorch 4 natural-language-processing 4 protein 4 rna-structure-prediction 3 structure 3 protein-folding 3 ai 3 biology 3 prediction 3 information-extraction 3 event-extraction 3 huggingface-spaces 2 artificial-intelligence 2 energy-minimization-methods 2 gas-phase-molecules 2 paper 2 nlp 2 named-entity-recognition 2 ion-mobility-spectrometry 2 deep-neural-networks 2 mass-spectrometry 2 molecular-modeling 2 bioinformatics-tool 2 2d 2 materials-science 2 airss 2 biological-data-analysis 2 smiles-strings 2 prediction-algorithm 2 pseudoknot 2 rna-secondary-structure 2 rna-secondary-structure-prediction 2 rna-structure 2 secondary-structure 2 secondary-structure-prediction 2 single-sequence 2 pdb 2 alphafold 2 molecule 2 generative-model 2 python-application 2 python 2 proteins 2 computational-biology 2 molecular-docking 2 casp 2 protein-sequences 2 tensorflow 2 pipeline 2 protein-structure-prediction 2 protein-refinement 1 profiling 1 score-matrix 1 substitutions 1 alphafold3 1 snakemake-workflow 1 alphafold-multimer 1 protein-protein-interactions 1 chain 1 cnn 1 cullpdb 1 keras 1 protein-protein-interaction 1 temporal-learning 1 amino-acids 1 homology-search 1 protein-language-model 1 algorithm 1 nussinov 1 teaching 1 crystal-structure 1 genetic-algorithm 1 physics-2d 1 statistical-physics 1 likelihood 1 model-refinement 1 molecular-replacement 1 protein-protein-complexes 1 energy-model 1 ie 1 physics 1 speech 1 chemistry 1 unsupervised-learning 1 secondary 1 amino-acid-sequence 1 rnn 1 recurrent-neural-networks 1 jupyter-notebook 1 python3 1 language-models 1