structure-prediction 40 bioinformatics 8 deep-learning 7 machine-learning 7 protein-structure 6 rna 5 natural-language-processing 4 protein 4 structural-biology 4 alignment 4 rna-structure-prediction 3 prediction 3 biology 3 structure 3 protein-folding 3 pytorch 3 event-extraction 3 information-extraction 3 ai 3 computational-chemistry 3 bioinformatics-tool 2 2d 2 biological-data-analysis 2 materials-science 2 airss 2 prediction-algorithm 2 casp 2 pseudoknot 2 rna-secondary-structure 2 rna-secondary-structure-prediction 2 rna-structure 2 secondary-structure 2 secondary-structure-prediction 2 single-sequence 2 deep-neural-networks 2 protein-structure-prediction 2 huggingface-spaces 2 named-entity-recognition 2 nlp 2 paper 2 tensorflow 2 smiles-strings 2 genetic-algorithm 1 open-source 1 masked-language-models 1 crystal-structure 1 protein-sequences 1 dna 1 dna-folding 1 dna-structure-prediction 1 folding 1 rna-folding 1 clinical-data 1 clinical-information-extraction 1 clinical-research 1 generative-model 1 teaching 1 pretrained-models 1 physics-2d 1 mass-spectrometry 1 proteins 1 statistical-physics 1 pipeline 1 likelihood 1 model-refinement 1 molecular-replacement 1 nextflow 1 pytorch-implementation 1 contact-prediction 1 keras 1 casp13 1 alphafold 1 protein-prediction 1 pdb 1 python3 1 recurrent-neural-networks 1 rnn 1 secondary 1 unsupervised-learning 1 protein-protein-complexes 1 protein-protein-interaction 1 core-nlp 1 dependency-parsing 1 sequence-labeling 1 syntactic-parsing 1 imitation-learning 1 learning-to-search 1 reinforcement-learning 1 protein-refinement 1 temporal-learning 1 homology-search 1 lstm 1 language-models 1 protein-language-model 1 jupyter-notebook 1 algorithm 1 amino-acid-sequence 1 molecule 1 chemistry 1 speech 1