structure-prediction 38 bioinformatics 8 machine-learning 7 deep-learning 7 protein-structure 5 natural-language-processing 4 structural-biology 4 protein 4 alignment 4 rna 4 event-extraction 3 information-extraction 3 structure 3 pytorch 3 computational-chemistry 3 biology 3 prediction 3 protein-folding 3 rna-structure-prediction 3 secondary-structure-prediction 2 single-sequence 2 2d 2 bioinformatics-tool 2 biological-data-analysis 2 tensorflow 2 prediction-algorithm 2 named-entity-recognition 2 pseudoknot 2 nlp 2 casp 2 paper 2 rna-secondary-structure 2 protein-structure-prediction 2 airss 2 materials-science 2 huggingface-spaces 2 ai 2 rna-secondary-structure-prediction 2 smiles-strings 2 rna-structure 2 deep-neural-networks 2 secondary-structure 2 generative-model 1 acl2023 1 energy-model 1 ie 1 physics 1 speech 1 chemistry 1 contact-prediction 1 pytorch-implementation 1 nextflow 1 pipeline 1 proteins 1 mass-spectrometry 1 open-source 1 masked-language-models 1 protein-sequences 1 dna 1 dna-folding 1 dna-structure-prediction 1 folding 1 rna-folding 1 clinical-data 1 clinical-information-extraction 1 clinical-research 1 imitation-learning 1 learning-to-search 1 reinforcement-learning 1 protein-refinement 1 temporal-learning 1 homology-search 1 protein-language-model 1 algorithm 1 nussinov 1 teaching 1 crystal-structure 1 genetic-algorithm 1 physics-2d 1 statistical-physics 1 likelihood 1 model-refinement 1 molecular-replacement 1 molecule 1 amino-acid-sequence 1 jupyter-notebook 1 language-models 1 lstm 1 pretrained-models 1 python3 1 recurrent-neural-networks 1 rnn 1 secondary 1 unsupervised-learning 1 protein-protein-complexes 1 protein-protein-interaction 1 core-nlp 1 dependency-parsing 1 sequence-labeling 1 syntactic-parsing 1