Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: homology-search

A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes

Language: Python - Size: 89.6 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 13 - Forks: 6

A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.

Language: Python - Size: 235 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

Searching proteins against a database of embeddings

Language: Python - Size: 309 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

A kmer-based homology searching tool

Language: Julia - Size: 1.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

Language: R - Size: 263 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 0

RNAlien - unsupervised RNA family model construction

Language: Haskell - Size: 2.5 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 14 - Forks: 2

A simple pipeline to create and search HMM models against reference protein databases.

Language: Perl - Size: 174 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 1

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

Language: Perl - Size: 27.9 MB - Last synced: 3 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 2

Algebraic topology based header only library to extract insight of complex high dimensional data.

Language: HTML - Size: 26.6 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 7 - Forks: 3

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