Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: orthology-inference
datasnakes/OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Language: Python - Size: 40.6 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 27 - Forks: 4
DRL/kinfin
Taxon-aware analysis of clustered protein sequences
Language: Python - Size: 92.3 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 28 - Forks: 12
BIONF/fDOG
Feature-aware Directed OrtholoG search
Language: Python - Size: 28.4 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 8 - Forks: 3
JLSteenwyk/orthofisher
a broadly applicable tool for automated gene identification and retrieval
Language: Python - Size: 81.9 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 24 - Forks: 1
JLSteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Language: Python - Size: 112 MB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 19 - Forks: 1
PhyloSofS-Team/thoraxe
Use Thor's Axe to cut exons into their evolutionary building blocks :zap:
Language: Python - Size: 9.29 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 2
datasnakes/orthoevol-snakemake
A snakemake workflow for the OrthoEvol python package.
Language: Python - Size: 11.7 KB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0
drostlab/orthologr
Genome wide orthology inference and dNdS estimation
Language: R - Size: 103 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 82 - Forks: 27
univieCUBE/deepnog
Protein orthologous group assignment with deep learning
Language: Python - Size: 4.51 MB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 24 - Forks: 8
UdeS-CoBIUS/TranscriptOrthology
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
Language: Python - Size: 16.4 MB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 1 - Forks: 0
fethalen/phylopypruner
Tree-based orthology inference with functionality for reducing contamination
Language: Python - Size: 13.6 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 1
arendsee/synder
Trace intervals between genomes using a synteny map
Language: C++ - Size: 4.52 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 7 - Forks: 3
alepfu/vog-eda
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
Language: Jupyter Notebook - Size: 501 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
Rinoahu/SwiftOrtho
A high performance tool to identify orthologs and paralogs across genomes.
Language: Python - Size: 20.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 22 - Forks: 12
glarue/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Language: Python - Size: 79.1 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 6 - Forks: 3
wrf/supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Language: Python - Size: 41.4 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 8 - Forks: 3
SamiLhll/rbhXpress
A shell script that uses diamond to compute the reciprocal best hits between two proteomes in a rush.
Language: Shell - Size: 12.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
fethalen/orthoquoll
A stand-alone tool for evaluating simple statistics of orthologs
Language: Python - Size: 340 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
BIONF/HaMStR
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Language: Perl - Size: 27.9 MB - Last synced: 2 months ago - Pushed: over 3 years ago - Stars: 8 - Forks: 2
BIONF/dcc2 Fork of trvinh/dcc2
Dynamic core orthologs compilation tool
Language: Python - Size: 180 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
CyanoWorld/reciprocal_blast_pipeline
Reciprocal BLAST analysis pipeline with Snakemake and Django
Language: HTML - Size: 57.9 MB - Last synced: 9 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
