GitHub topics: supermatrix
RicoLeiser/Genome2Tree
This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta
Language: Python - Size: 6.89 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
AntonelliLab/cavvy-tree
:hamster: Building a tree of some small fluffy animals
Language: R - Size: 1.7 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
hansiu/MatPhylobi
a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
Language: Python - Size: 789 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 0
wrf/supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Language: Python - Size: 41.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 3
wrf/heteropecilly
in depth analysis of heteropecillious sites in supermatrices
Language: Shell - Size: 21.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0