Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: orthologs
datasnakes/OrthoEvolution
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Language: Python - Size: 40.6 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 27 - Forks: 4
BIONF/PhyloProfile
A phylogenetic profile analysis tool
Language: R - Size: 1.94 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 29 - Forks: 9
BIONF/fDOG
Feature-aware Directed OrtholoG search
Language: Python - Size: 28.4 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 8 - Forks: 3
RhettRautsaw/PhyProbe
PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).
Language: Python - Size: 890 KB - Last synced: 29 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
Language: Python - Size: 16.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 75.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 13 - Forks: 5
davidemms/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Language: Python - Size: 51.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 609 - Forks: 183
mr-eyes/orthodb-refseq-mapper
Mapping RefSeq RNA to OrthoDB (Under Development)
Language: Python - Size: 1.99 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0
travis-m-blimkie/getPASequences
Submit PA locus tags and download annotations or sequences, and map to other strains
Language: CSS - Size: 27.5 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
PriyaLakr/coreGenomePhylogeny
Script to design core genome phylogeny using bacterial genome assemblies
Language: Shell - Size: 64.5 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1
Rinoahu/SwiftOrtho
A high performance tool to identify orthologs and paralogs across genomes.
Language: Python - Size: 20.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 22 - Forks: 12
glarue/reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
Language: Python - Size: 79.1 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 6 - Forks: 3
roblehmann/marineHeatwave
Supplementay Material for publication "Species-specific molecular responses of wild coral reef fishes during a marine heatwave"
Size: 563 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
wrf/supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
Language: Python - Size: 41.4 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 8 - Forks: 3
dmitrymyl/ortho2align
ortho2align is a lncRNA ortholog discovery CLI tool based on syntenic regions and statistical assessment of alignment nonrandomness.
Language: Python - Size: 9.83 MB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 5 - Forks: 1
tseemann/noary
🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
Language: Perl - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 6 - Forks: 2
pwilmart/annotations
GUI tool to add rich annotations to PAW summary files from Swiss-Prot flat text files.
Language: Python - Size: 24.1 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 5 - Forks: 2
ohdongha/OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
Language: Python - Size: 176 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 3
pegi3s/two-way-blast
A Compi pipeline for finding orthologs using a two-way BLAST approach.
Language: Dockerfile - Size: 302 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0
brettwhitty/bw-msu-tools
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Language: Perl - Size: 3.76 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
lrgr/homologene
A small pipeline to extract homologs from Homologene
Language: Python - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1
