soedinglab/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

Language: C - Size: 29.7 MB - Last synced: 14 days ago - Pushed: 28 days ago - Stars: 1,246 - Forks: 178

YogiOnBioinformatics/BLAST-Biopython-Challenge

Challenge to efficiently BLAST files (FASTA file & quality scores) and report key metrics about FASTA back to user.

Language: Python - Size: 10.8 MB - Last synced: about 10 hours ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

rumblefrog/Player-Air-Blast

Toggle Player Air Blast

Language: SourcePawn - Size: 24.4 KB - Last synced: about 11 hours ago - Pushed: almost 7 years ago - Stars: 4 - Forks: 0

Mathieu2301/blast-api

Allows you to use global 'serverless' events in JavaScript (Node or Web)

Language: JavaScript - Size: 11.7 KB - Last synced: 1 day ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

ch1ru/genome-lab

A bioinformatics web app for comparative genomics

Language: TypeScript - Size: 210 KB - Last synced: about 4 hours ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

wurmlab/sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Language: JavaScript - Size: 78.7 MB - Last synced: about 7 hours ago - Pushed: 1 day ago - Stars: 265 - Forks: 113

tanghaibao/jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Language: Python - Size: 9.35 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 692 - Forks: 179

iliapopov17/SequenceForge-Lite

Repository for simple tool to work with fasta, fastq files and bio seqs

Language: Python - Size: 4.17 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

kalilamali/Whole_genome_sequencing_analysis

Whole genome sequencing (WGS) was combined with bioinformatics tools to investigate the epidemiology of Vibrio cholerae in the Philippines and in other cholera affected countries.

Size: 7.37 MB - Last synced: 4 days ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

sing-group/biojs-vis-blasterjs

BlasterJS - an open source JS library to display Blast results

Language: JavaScript - Size: 2.26 MB - Last synced: 6 days ago - Pushed: over 4 years ago - Stars: 19 - Forks: 3

seqan/seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Language: C++ - Size: 20.6 MB - Last synced: 4 days ago - Pushed: about 2 months ago - Stars: 389 - Forks: 80

raghavagps/transfacpred

An ensemble method for predicting transcription factor in protein sequences

Language: Python - Size: 163 KB - Last synced: 7 days ago - Pushed: 7 months ago - Stars: 3 - Forks: 1

yodeng/hpc-blast

divide blast query and run all chunks across HPC or localhost in parallelly

Language: Python - Size: 42 KB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

ElasticSea/unity-fracture

Fracture any mesh at runtime

Language: C# - Size: 78.5 MB - Last synced: 9 days ago - Pushed: almost 3 years ago - Stars: 992 - Forks: 119

chrischang/blast-ecosystem

Unofficial Blast Ecosystem Map

Language: TypeScript - Size: 2.07 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 5

sxsnc/Eth-Trading-Bot

My eth arbitrage bot private backup,

Language: JavaScript - Size: 1.04 MB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 46 - Forks: 0

abdelhak-zaaim/BioBlastAutomation

bioBlastAutomation is a Python-based project designed to automate the process of performing BLAST search .

Language: CSS - Size: 870 KB - Last synced: about 10 hours ago - Pushed: 13 days ago - Stars: 2 - Forks: 0

gq1/blast-fasta

blast a fasta file

Language: Java - Size: 6.84 KB - Last synced: 15 days ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

luke-b/cannon-love2d

Love2d simple example, cannon firing balls

Language: Lua - Size: 163 KB - Last synced: 17 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

williamgilpin/pypdb

A Python API for the RCSB Protein Data Bank (PDB)

Language: Python - Size: 608 KB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 289 - Forks: 75

mosuka/blast 📦

Blast is a full text search and indexing server, written in Go, built on top of Bleve.

Language: Go - Size: 34.1 MB - Last synced: about 24 hours ago - Pushed: over 2 years ago - Stars: 1,069 - Forks: 67

soldamatlab/nucleotide-blast

Simple implementation of the BLAST algorithm

Language: Python - Size: 37.1 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

mymatsubara/datasus-dbc-py

Decompress DATASUS's dbc files into dbf files in python.

Language: Rust - Size: 10.7 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 1 - Forks: 0

dillondaudert/proteindatasets

Creating and manipulating various protein sequence-structure datasets using Python, Julia, and other tools.

Language: Jupyter Notebook - Size: 138 KB - Last synced: 15 days ago - Pushed: over 5 years ago - Stars: 6 - Forks: 5

a3vilc0de/PentesterSpecialDict

Dictionary sets often used in penetration testing work

Language: PHP - Size: 54.2 MB - Last synced: 23 days ago - Pushed: about 1 month ago - Stars: 1,397 - Forks: 282

seqan/seqan

SeqAn's official repository.

Language: C++ - Size: 150 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 452 - Forks: 170

mahmoudHamdy199/Airdrops-Hunter

Size: 1000 Bytes - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

sil-project/EmailCRMBundle

CRM bundle for Symfony with Email management

Language: PHP - Size: 174 KB - Last synced: 29 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

SarthakMakhija/blast

Load generator for TCP servers.

Language: Go - Size: 126 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 17 - Forks: 0

SarthakMakhija/blast-core

Load generator for TCP servers.

Language: Go - Size: 1.73 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

clemgoub/TE-Aid

Annotation helper tool for the manual curation of transposable element consensus sequences

Language: R - Size: 2.13 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 35 - Forks: 6

billzt/PrimerServer2

PrimerServer2: a high-throughput primer design and specificity-checking platform

Language: Python - Size: 961 KB - Last synced: 2 days ago - Pushed: over 1 year ago - Stars: 69 - Forks: 14

LyonsLab/StarBLAST

StarBLAST allows BLAST scalability by distributing jobs across computer systems.

Language: Ruby - Size: 47 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 9

seqan/lambda

LAMBDA – the Local Aligner for Massive Biological DatA

Language: C++ - Size: 2.26 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 74 - Forks: 19

qPCR4vir/seqan3 Fork of seqan/seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Language: C++ - Size: 13 MB - Last synced: about 1 month ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

drostlab/orthologr

Genome wide orthology inference and dNdS estimation

Language: R - Size: 103 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 82 - Forks: 27

widdowquinn/2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

Language: HTML - Size: 105 MB - Last synced: 16 days ago - Pushed: about 6 years ago - Stars: 20 - Forks: 12

NuruddinKhoiry/blastMining

Mining NCBI BLAST output

Language: Python - Size: 13.2 MB - Last synced: 2 days ago - Pushed: over 1 year ago - Stars: 7 - Forks: 1

aleimba/bac-genomics-scripts

Collection of scripts for bacterial genomics

Language: Perl - Size: 2.96 MB - Last synced: 2 months ago - Pushed: over 4 years ago - Stars: 42 - Forks: 34

voorloopnul/decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

Language: Python - Size: 5.86 MB - Last synced: 23 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 2

johngvibes/BlastVibeDAO

VibeDAO Blast Testnet

Size: 6.84 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

drostlab/metablastr

Seamless Integration of BLAST Sequence Searches in R

Language: R - Size: 656 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 31 - Forks: 8

esteinig/brick

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons :microbe:

Language: Svelte - Size: 2.26 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 8 - Forks: 0

HikuruOfficial/Hikuru-Blast-Staker-Passport

Blockchain Passport — is a digital ID that uses wallet data to verify a user's activity on the blockchain. It does not store personal information and ensures user privacy. It also uses open web standards to verify identity and can be used for verification across blockchains, which increases the reliability and security of the system

Language: TypeScript - Size: 173 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

TABASCOatw/particle-blast-demo

Example application for leveraging Blast Sepolia within Particle's Smart Wallet-as-a-Service

Language: TypeScript - Size: 9.77 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

vinuesa/TIB-filoinfo

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

Language: Shell - Size: 155 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 16 - Forks: 4

Kartmaan/Turret

An automatic turret made with Pygame

Language: Python - Size: 19.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

NAL-i5K/genomics-workspace

Django website project for common sequence search tools.

Language: JavaScript - Size: 444 MB - Last synced: 17 days ago - Pushed: over 1 year ago - Stars: 14 - Forks: 5

jjti/repp

repository-based plasmid design

Language: Go - Size: 338 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 5

mtisza1/Cenote-Taker

DEPRECATED: Use Cenote-Taker 3 instead

Language: Shell - Size: 147 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 14 - Forks: 2

wuaipinglab/CoroAnnoter

A semi-automatic coronavirus genome annotation tool

Language: R - Size: 176 KB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

unikill066/BLAST-Search

Search and Alignment Tool in Bioinformatics Domain

Language: Shell - Size: 600 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Sagarnandeshwar/Sequence_Alignment_For_Probabilistic_Genome

Computational Biology Methods and Research (COMP 561) Course Project

Language: Python - Size: 2.73 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

datasnakes/OrthoEvolution

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Language: Python - Size: 40.6 MB - Last synced: 3 days ago - Pushed: 4 months ago - Stars: 27 - Forks: 4

bebop/ark

Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL

Language: Go - Size: 17 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 19 - Forks: 5

mymatsubara/datasus-dbc

Decompress DATASUS's dbc files into dbf files in rust.

Language: Rust - Size: 14.6 KB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

ncbi/elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

Language: Python - Size: 1.74 MB - Last synced: 29 days ago - Pushed: 5 months ago - Stars: 36 - Forks: 12

blast-project/DoctrineSessionBundle

Store sessions in database using doctrine

Language: PHP - Size: 144 KB - Last synced: 28 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 1

mansikath/whole-genome-sequencing-pipeline

A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.

Language: HTML - Size: 1.96 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

VEuPathDB/lib-jvm-blast

Language: Kotlin - Size: 1.86 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

blinard-BIOINFO/NCBITaxonomy

Tools to build a copy of the NCBI Taxonomy database in a local SQL schema and query it via a Java package.

Language: Java - Size: 78.1 KB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 1

arx-tools/node-pkware

Node JS implementation of StormLib's Pkware compression/decompression algorithm

Language: C - Size: 157 MB - Last synced: 17 days ago - Pushed: 6 months ago - Stars: 2 - Forks: 2

VEuPathDB/util-blast-validator

HTTP server that validates JSON Blast CLI configs.

Language: Go - Size: 485 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

tlapack/testBLAS

Tests for BLAS that complement the ones in the Reference BLAS repository

Language: C++ - Size: 141 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 1

scipion-chem/scipion-chem-blast

Plugin to run blast in scipion

Language: Python - Size: 106 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

masikol/barapost

Toolkit for binning FASTA, FASTQ and FAST5 files according to taxonomic annotation

Language: Python - Size: 3.37 MB - Last synced: 6 months ago - Pushed: 11 months ago - Stars: 4 - Forks: 1

Joseph7e/Assign-Taxonomy-with-BLAST

Assign taxonomy with blast, can be used for qiime

Language: Python - Size: 63.5 KB - Last synced: 6 months ago - Pushed: 9 months ago - Stars: 15 - Forks: 6

zaidalrakabi/SeqKernel

String Kernel for comparing protein sequences

Language: C++ - Size: 670 KB - Last synced: 6 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

sing-group/BDBM

BLAST DataBase Manager

Language: Java - Size: 1.57 MB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

OrsonMM/Blast-score-ratio-for-genomics

Language: Python - Size: 9.48 MB - Last synced: 6 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

lucaspalmeira/BioPep

Search, molecular modeling and molecular docking of peptides.

Language: Python - Size: 34.8 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 7 - Forks: 3

jlanga/smsk_trinotate

Snakemake workflow to run transdecoder + trinotate

Language: Python - Size: 8.92 MB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 8 - Forks: 2

pwilmart/PAW_BLAST

A utility for blasting one protein FASTA file against another FASTA file to find orthologs.

Language: Python - Size: 397 KB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 7 - Forks: 2

hng/BiomolecularStructures.jl

The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.

Language: Julia - Size: 810 KB - Last synced: 6 months ago - Pushed: almost 7 years ago - Stars: 12 - Forks: 6

AshokHub/xmlBLASTparser

a lightweight PHP library for parsing NCBI BLAST XML output

Language: PHP - Size: 1.77 MB - Last synced: 6 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

AntoineHo/PriDe

PriDe: Primer Design tool

Language: Python - Size: 38.1 KB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 2

ARYrt/VirusMAPPER

This program is able to align reads to a database with genomes of reference and support single or paired-end reads from Illumina sequencing technology in FASTQ format (or fastq.gz)

Language: Python - Size: 7.07 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

msestak/FindOrigin

Perl modulino used to analyze BLAST output and BLAST database in ClickHouse (columnar DBMS for OLAP and analytics).

Size: 61.4 MB - Last synced: 7 months ago - Pushed: over 7 years ago - Stars: 2 - Forks: 1

BTalamantesBecerra/omicR_for_RStudio

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.

Language: Python - Size: 29.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 0

BTalamantesBecerra/omicR

omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).

Language: Python - Size: 29.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 2

BTalamantesBecerra/omicR_for_Windows

Windows Executable. This package has the following fuctions: 1) Create fasta files. 2) Download genomes from NCBI.3) Create genome database for BLAST. 4) Run BLASTn and selects the best match per sequence. 5) Alternative step: Select the best match from a BLAST

Size: 36.8 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

eparayno/SNPAnalyzer

Takes GenBank data (csv and fasta), aggregates set using common length, and identifies SNPs. Buffered nucleotide location with most frequent mutations will be BLASTed (Basic Local Alignment Search Tool) to return top organism match.

Language: Python - Size: 522 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

santiagosnchez/rbh

Finds reciprocal-best-hit matches between two all-by-all BLAST searches

Language: Perl - Size: 20.5 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 4 - Forks: 5

bethsheets/palumbi_scripts

Most up-to-date scripts used in the Palumbi lab

Language: Python - Size: 159 KB - Last synced: 7 months ago - Pushed: almost 7 years ago - Stars: 7 - Forks: 4

Edinburgh-Genome-Foundry/genome_collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

Language: Python - Size: 367 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 21 - Forks: 0

mukhomorr/PepShinyToolsR

Simple shiny app for protease cleavage sites in proteins visualization. Could be helpfull on hplc-ms/ms based experiment design step. In addition to this, some basic tools for protein/peptide properties calculation and sequence data (pre)processing are provided.

Language: R - Size: 6.18 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0

vizkidd/QuickBLAST

BLAST without Sys.Call()

Language: C++ - Size: 7.13 MB - Last synced: 3 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

Ibrahim-Olajide/ibrahim-olajide.github.io

Variation in Gene caused by Mutation and Alternative Splicing: Identification and Characterization of Pathogenic Variants in TRY, OCA2, HPS-1 and OA1 Genes that leads to Albinism

Size: 762 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

systemPipeR/SPblast

BLAST Workflow Template

Language: TeX - Size: 24.2 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 1

Genome-structure-evolution-analysis/AKRUP

AKRUP: ancestral karyotype reconstruction universal pipeline

Language: Python - Size: 35.6 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 2 - Forks: 1

BFL-lab/Mfannot

MFannot is a program for the annotation of mitochondrial and plastid genomes

Language: Perl - Size: 1.01 MB - Last synced: 6 months ago - Pushed: 7 months ago - Stars: 12 - Forks: 5

hwixley/BI-Coursework2

Using DNA sequence alignment tools (ie. BLAST) to detect the relation between SFARI genes and Autism Spectrum Disorder (ASD).

Language: HTML - Size: 250 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

hwixley/BI-coursework-1

Using DNA sequence alignment tools (ie. BLAST) to detect the existence of the GULO gene (used to biosynthesise vitamin-C) in varying different organisms.

Language: Jupyter Notebook - Size: 13.5 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

lhqing/primer_design 📦

Batch primer design for genomic regions

Language: Jupyter Notebook - Size: 106 KB - Last synced: 6 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 3

jlanga/docker-orthofinder Fork of cmonjeau/docker-orthofinder

Dockerfile for OrthoFinder tool

Size: 4.88 KB - Last synced: 9 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

lynnlangit/blastn-jupyter-docker Fork of plyte/blastn-jupyter-docker

Container for blastn and Jupyter notebook

Language: Shell - Size: 205 KB - Last synced: 9 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

renzok/docker-ncbi-blast-demo

Demonstrates use of NCBI BLAST in Docker Container

Size: 17.6 KB - Last synced: 9 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

fog-bank/localblast

Helper GUI tool to run BLAST locally and view the summary graphically

Language: C# - Size: 274 KB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

yackx/rockblaster

Classic arcade Asteroid Deluxe revival in HTML5 + TypeScript 🚀🔫

Language: TypeScript - Size: 752 KB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

kaymers/MetaG_backend

Processing modules of the metagenomic visualization tool, MetaG.

Language: Python - Size: 64.6 MB - Last synced: 9 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 1