Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: blast-search
mhahsler/rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
Language: R - Size: 450 KB - Last synced: 15 days ago - Pushed: 17 days ago - Stars: 100 - Forks: 22
kris96tian/dsa_cpp
Bioinformatics Data Structures & Algorithms [such as the Q-Gram Index, scoring alignments , rna-structure prediction, generating the BLAST-Ńeighborhood and more.]
Language: C++ - Size: 120 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0
laurentnoe/yass
genomic alignment similarity search tool
Language: C - Size: 496 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 17 - Forks: 6
jananiravi/lectures-phylogeny_compgenomics
Supporting material for MMG 801 Lectures 3–5 on 'Phylogeny and Comparative Genomics'
Size: 1.6 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
PaulaRS/CountBlastHits
Retrieves matrix with number of gene/protein hits per query in the blast result. Takes blast tabular file as input.
Language: Python - Size: 108 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
drostlab/metablastr
Seamless Integration of BLAST Sequence Searches in R
Language: R - Size: 656 KB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 31 - Forks: 8
AshokHub/BLASTphp
A PHP wrapper for NCBI BLAST URL API
Language: PHP - Size: 89.8 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 8 - Forks: 4
raghavagps/hladr4pred2
An improved method for predicting binders of HLA-DRB1-04:01
Language: Python - Size: 2.57 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0
xapple/seqsearch
Sequence similarity searches (e.g. BLAST) made easy
Language: Python - Size: 777 KB - Last synced: 10 days ago - Pushed: 8 months ago - Stars: 1 - Forks: 1
desmid/mview
MView extracts and reformats the results of a sequence database search or multiple alignment.
Language: Perl - Size: 2.61 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 23 - Forks: 11
Azure/azure-hpc 📦
Microsoft Azure HPC & Big Compute
Language: JavaScript - Size: 7.16 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 14 - Forks: 11
cas-bioinf/rboAnalyzer
Tool for analysing BLAST output for ncRNA sequences
Language: Python - Size: 4.82 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 2
patrick-douglas/Seqs-Extractor
The official Seqs-Extractor Repository
Language: Shell - Size: 107 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0
OpenChrom/GeneIdent
Initiate sequence database searches in OpenChrom.
Size: 43.9 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1
Queuebee2/Course4Tutor
Repo for course 4 bioinformatics
Language: Python - Size: 1.9 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 0
prateek22sri/Hadoop-BLAST
Implementation of "Basic Local Alignment Search Tool" in Hadoop for DNA analysis
Language: Java - Size: 201 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
