cogent3/cogent3

Comparative Genomics Toolkit 3

Language: Python - Size: 44.6 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 129 - Forks: 67

biopython/biopython

Official git repository for Biopython (originally converted from CVS)

Language: Python - Size: 71.5 MB - Last synced at: 4 days ago - Pushed at: 15 days ago - Stars: 4,563 - Forks: 1,784

snail123815/pybioinfo

Scripts to be used as a bioinformatician, currently in microbiology field.

Language: Python - Size: 4.24 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

jajik123/GenAnalyzer

GenAnalyzer is a web application designed for the analysis of protein sequences, mutation detection, and exploring their links to genetic diseases. Built using Flask, this tool integrates data from UniProt and ClinVar for efficient bioinformatics analysis.

Language: JavaScript - Size: 311 KB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

Lachiemckbioinfo/fasta-tools

A collection of simple fasta tools, including a fasta extraction tool and a tool to update fasta descriptions based on another fasta template

Language: Python - Size: 40 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

kvdomingo/primerdriver 📦

PrimerDriver - Automated design of mutagenic PCR primers

Language: Python - Size: 6.34 MB - Last synced at: 3 days ago - Pushed at: 6 months ago - Stars: 8 - Forks: 0

ChenHsieh/BioLOLPython Fork of KartikTalwar/LOLPython

A lolspeak-inspired biological scripting interpreter

Language: Python - Size: 35.2 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

VirusDecode-project/VirusDecode

VirusDecode integrates bioinformatics tools for efficient virus sequence analysis, supporting rapid mRNA vaccine development with a biopython.

Language: Java - Size: 16.9 MB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 6

EbodShojaei/sentinel

Sentinel is an AI agent that retrieves PubMed publications using phi3.5 with phidata to generate and run a MeSH search on NCBI Entrez.

Language: Python - Size: 25.4 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 1 - Forks: 0

raghurama123/PyLifeS

A graduate-level elective course: Python Programming for Life Science Students

Language: Jupyter Notebook - Size: 16.1 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 9 - Forks: 40

modernatx/seqlike

Unified biological sequence manipulation in Python

Language: Python - Size: 1.22 MB - Last synced at: 12 days ago - Pushed at: 10 months ago - Stars: 207 - Forks: 20

Alepidoptera7/k-means-to-BLAST-

Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

Language: Python - Size: 6.84 KB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

Alepidoptera7/assembly_scaffold_BLAST

Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.

Language: Python - Size: 8.79 KB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

pydna-group/pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Language: Jupyter Notebook - Size: 54.7 MB - Last synced at: 10 days ago - Pushed at: 14 days ago - Stars: 176 - Forks: 47

Edinburgh-Genome-Foundry/SnapGeneReader Fork of IsaacLuo/SnapGeneFileReader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

Language: Python - Size: 636 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 19 - Forks: 6

Okerew/biobridge

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

Language: Python - Size: 5.42 MB - Last synced at: 17 days ago - Pushed at: 2 months ago - Stars: 6 - Forks: 1

GiatrasKon/Algorithms-in-Structural-Bioinformatics-Assignments

Assignments from the 'Algorithms in Structural Bioinformatics' graduate course, exploring RNA folding, molecular conformational analysis, and protein structure comparison using Python and bioinformatics tools.

Language: Jupyter Notebook - Size: 6.61 MB - Last synced at: 23 days ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

althonos/pyorthoani

A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

Language: Python - Size: 2.23 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 25 - Forks: 3

LeticiaMilan/Sitio-Ligacao-Proteinas

🧬 Computando o sítio de ligação em uma proteína, em Python

Size: 1000 Bytes - Last synced at: 24 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

yachielab/QUEEN

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

Language: Python - Size: 33.3 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 42 - Forks: 8

moshi4/phyTreeViz

Simple phylogenetic tree visualization python package for phylogenetic analysis

Language: Python - Size: 2.34 MB - Last synced at: 10 days ago - Pushed at: 7 months ago - Stars: 48 - Forks: 0

ponnhide/pyCircos

python Circos

Language: Python - Size: 194 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 352 - Forks: 65

Anand-Research-Group/complex-I

This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.

Language: Jupyter Notebook - Size: 5.67 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

HarlockOfficial/Deep-Learning-and-Computer-Vision 📦

Prediction of Protein-Protein Interaction (PPI) sites for the classification of aminoacidic interaction

Language: Python - Size: 190 KB - Last synced at: 28 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

moshi4/GBKviz 📦

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Language: Python - Size: 5.25 MB - Last synced at: 5 days ago - Pushed at: almost 3 years ago - Stars: 20 - Forks: 4

Solrikk/BioSynth

🔬 BioSynth is an innovative tool designed to simulate and visualize protein synthesis from DNA sequences. It integrates modern bioinformatics methods to provide a detailed understanding of the relationship between DNA sequences and their corresponding protein structures.

Language: Python - Size: 400 KB - Last synced at: 25 days ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

PopovIILab/PhoBl

🦇🦠🌳Study on detection of Brno loanvirus in Southern Russia

Language: Jupyter Notebook - Size: 8.26 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

smthorat/Python_Bioinformatics

This repository serves as a hub for various bioinformatics projects developed using Python. It includes Gene-Assembly, Gene-Classifier, BioResearchChat

Language: Jupyter Notebook - Size: 7.73 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

SevdanurGENC/Bioinformatics-with-Biopython-Lecture-Notes

This repo contains Bioinformatics lecture notes using Biopython.

Language: Jupyter Notebook - Size: 34.6 MB - Last synced at: 22 days ago - Pushed at: 4 months ago - Stars: 21 - Forks: 0

Abrar2652/oist-comparative-genomics

Language: Python - Size: 2.36 GB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

ArabianCoconut/BioFlask

BioFlask is an simple web interface for pairwise alignment.

Language: CSS - Size: 817 KB - Last synced at: 20 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

Bjorn99/Tiny

A powerful terminal-based bioinformatics tool designed for DNA sequence analysis.

Language: Python - Size: 16 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

lucaspalmeira/bioinfo

Guia de programas e ferramentas de bioinformática e química computacional

Size: 16.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

Albi1999/Biological_Data_Assignment

Assignment of the Biological Data Course

Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

laelbarlow/amoebae

Workflow for identifying and classifying homologous gene/protein sequences

Language: Python - Size: 7.72 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 20 - Forks: 2

natayadev/BioXplorer

Un CLI que explora secuencias biológicas de NCBI con facilidad 📊 Realiza análisis básicos como transcripción, traducción y cálculo de GC, permite guardar el análisis exploratorio en distintos formatos 💾

Size: 3.91 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

shgopher/PythonFamily

python 知识体系，包括Python基础，Python AI， Python 爬虫，Python 脚本，Python 数据分析

Language: Python - Size: 7.92 MB - Last synced at: 16 days ago - Pushed at: 8 months ago - Stars: 7 - Forks: 0

weisscharlesj/BiopythonRamachandran

Language: Jupyter Notebook - Size: 94 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 18

Zsailer/phylopandas

Pandas DataFrames for phylogenetics

Language: Python - Size: 982 KB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 73 - Forks: 21

elcharitas/bioinformatics_zero_to_hero

Bioinformatics with BioPython Course Guide

Language: Python - Size: 26.4 KB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

vinisalazar/BioProv

A provenance library for bioinformatics workflows 🧬 🔀 📝

Language: Python - Size: 12.4 MB - Last synced at: about 20 hours ago - Pushed at: over 3 years ago - Stars: 14 - Forks: 1

RKMlab/perf

PERF is an Exhaustive Repeat Finder

Language: HTML - Size: 16 MB - Last synced at: 12 days ago - Pushed at: about 4 years ago - Stars: 32 - Forks: 11

MzamoTembe/autoencoder

An autoencoder designed for dimensionality reduction of a protein structure's feature space that describes the structural environment of an amino acid by looking at the relative relative positions, orientations and dihedral angles of neighbouring residues in Euclidean space.

Language: Python - Size: 18.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

NikitaArya17/the_biopython_suite

A collection of short projects intended to demonstrate the wide variety of libraries available in Biopython.

Language: Jupyter Notebook - Size: 214 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Mylinear/Rosalind

Solutions of Problems in Rosalind Website

Language: Python - Size: 6.84 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

chris-rands/biopython-coronavirus

Biopython Jupyter Notebook tutorial to characterize a small genome

Language: Jupyter Notebook - Size: 36.1 KB - Last synced at: 5 months ago - Pushed at: about 5 years ago - Stars: 98 - Forks: 20

agmcfarland/biopython_workshop

Biopython: Work with biological sequence data in Python

Language: Jupyter Notebook - Size: 14.4 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 4 - Forks: 1

satoshikawato/gbdraw

A genome diagram generator for microbes

Language: Python - Size: 83.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

gNOR-mu/Tarea1-Bioinformatica

Alineamiento de secuencias globales y locales de pares utilizando BLOSUM62 y PAM250

Language: Python - Size: 3.91 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

gabrielramirezv/BioPython

Repository for BioPython class, belonging to the Undergraduate Program in Genomic Sciences, UNAM.

Language: Python - Size: 445 KB - Last synced at: 23 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

darwinsorchid/Frataxin-Structure-Analysis

[Python] Structural bioinformatics analysis of the human frataxin protein involved in Friedreich's Ataxia (FRDA).

Language: Python - Size: 31.3 KB - Last synced at: 18 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

cgoliver/RNA-Popgen-Notebook

Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.

Language: Jupyter Notebook - Size: 206 KB - Last synced at: 17 days ago - Pushed at: almost 9 years ago - Stars: 6 - Forks: 1

rodogi/biographs

Python class to easily deal with protein networks.

Language: Python - Size: 42 MB - Last synced at: 18 days ago - Pushed at: almost 5 years ago - Stars: 16 - Forks: 3

jithin8mathew/Protein-feature-extraction

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Language: Python - Size: 1.56 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 19 - Forks: 2

elrf3lipes/ramon-s_portfolio

I'm passionate about Cloud and DevOps, and for the moment I'm posting some of my work and personal projects here to showcase that. If its useful for you, feel free to integrate or contribute!

Size: 915 KB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

darwinsorchid/GC-Content-Calculator

[Python] Tool for calculating GC content of nucleotide sequences with optional sliding window analysis. Sequence input options include strings and the following file formats: FASTA, FASTA Nucleid Acid, GenBank, Aligned FASTA and ClustalW.

Language: Python - Size: 75.2 KB - Last synced at: 2 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

arezoupst/BioPython

BioPython is a Python library for analyzing biological sequences.

Language: Jupyter Notebook - Size: 674 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

SUGAM2001/Python-for-Bioinformatics

A collection of python script, books, and tutorials for bioinformatics.

Language: Python - Size: 18.1 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

KauanQuinzote/Bioinformatics-Algorithms

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Language: Python - Size: 141 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

wheretrue/biobear

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Language: Rust - Size: 1.99 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 145 - Forks: 7

qhdwight/gene-codon-converter-reduce-gc 📦

Simple python program to reduce G/C content in a genetic sequence

Language: Python - Size: 1.81 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

mmalejky/proteins

Set of tools for protein sequence enrichment and protein domain finding

Language: Python - Size: 15.6 KB - Last synced at: 10 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

GuiFernandess7/Biostream-genomic-data-analytics

Genetic Streaming Application: Rust CLI leveraging Websockets and Biopython for near real-time genetic data visualization.

Language: Python - Size: 50.8 KB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

kayrakosog/Structural-Coverage-of-Human-Interactome

Language: Jupyter Notebook - Size: 43.9 MB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

InMDev/SecAlignVisualizer

SecAlignVisualizer is a tool for visualizing multiple sequence alignments with secondary structure annotations. It parses PDB files to extract helix and sheet information, maps this information to sequence alignments, and generates an HTML representation with color-coded secondary structures.

Language: Jupyter Notebook - Size: 242 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

manishabarse/Python-Codes

Language: Python - Size: 287 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

deliaBlue/preparatoryWeek_2023

This repository holds the material (documentation, activities and solutions) of the Bachelors degree of Bioinformatics 2nd course preparatory week. Course 2023-2024.

Language: Jupyter Notebook - Size: 8.86 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

suraj5424/Protein-sequence-analysis

This notebook does the analysis of a protein sequence dataset in FASTA format. It addresses challenges in data import, alignment, embedding, and classification using bioinformatics tools and machine learning techniques. The solution provides a systematic approach to extract insights from structured data, crucial for bioinformatics research.

Language: Jupyter Notebook - Size: 1.23 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

huseyincavusbi/biopython_c1-6

First steps to Bioinformatics by using Biopython tutorial documentation

Language: Jupyter Notebook - Size: 167 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

hansiu/bio-VCF Fork of biopython/biopython

biopython + VCF support, based on pyVCF

Language: Python - Size: 48.5 MB - Last synced at: 10 months ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 7

YannBouyeron/YannBouyeron.github.io

Python pour les SVT

Size: 611 KB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

tgolubch/typewriter

Aggregate blast results and/or perform MLST for a set of sample sequences vs a given panel of queries.

Language: Python - Size: 25.4 KB - Last synced at: 11 months ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 2

sialock/protein-folding-

Python code for simulating protein folding using Monte Carlo and analyzing the structure with MDTraj and Bio.PDB

Size: 8.79 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

danieldealmeidaduque/hemophilia-a-fviii-mutation-alignment

Hemophilia A - Using CDC's champ mutation list to mutate the wild FVIII amino acid sequence and aligning the resulting mutated sequences.

Language: Python - Size: 2.23 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

danieldealmeidaduque/hemophilia-a-fviii-genetic-algorithm

Hemophilia A - Using Genetic Algorithm with CDC's champ mutation list to predict severity

Language: Python - Size: 2.26 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

satoshikawato/bio_small_scripts

Trivial utilities

Language: Python - Size: 202 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 4 - Forks: 2

plotly/dash-cytoscape

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Language: Python - Size: 68.5 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 577 - Forks: 122

abdelhak-zaaim/BioBlastAutomation

bioBlastAutomation is a Python-based project designed to automate the process of performing BLAST search .

Language: CSS - Size: 870 KB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

iliapopov17/PhoBl

Repository for supplementary materials for study on detection of Brno loanvirus in Southern Russia

Language: Jupyter Notebook - Size: 2.44 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

YannBouyeron/genopy

Analyses génétiques et phylogénétiques pour les SVT

Language: Python - Size: 78.1 KB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

pyladies-brazil/grupo-estudo-bioinformatica

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

Language: Jupyter Notebook - Size: 10.3 MB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 41 - Forks: 13

YogiOnBioinformatics/BLAST-Biopython-Challenge

Challenge to efficiently BLAST files (FASTA file & quality scores) and report key metrics about FASTA back to user.

Language: Python - Size: 10.8 MB - Last synced at: 12 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

darlenewagner/NGS_Plot_Widgets

Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.

Language: Python - Size: 2.21 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

huseyincavusbi/beau_seqs1

Experiments on a random seq

Language: Jupyter Notebook - Size: 261 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

deepak15013/Bio-Bytes-Challenge-IIITD

Using Bio-Python, Solve a challenge involving comparision of DNA Sequences

Language: Python - Size: 623 KB - Last synced at: 12 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

dillondaudert/proteindatasets

Creating and manipulating various protein sequence-structure datasets using Python, Julia, and other tools.

Language: Jupyter Notebook - Size: 138 KB - Last synced at: 13 days ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 4

duartebred/Laboratorios-de-Bioinformatica-G2-MBI2023-24

Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Laboratórios de Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.

Language: Python - Size: 1.3 MB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

ivanbgd/bioinf_demo

A Bioinformatics demo in Python working with FASTQ files and using the Modin library

Language: Python - Size: 27.3 KB - Last synced at: 25 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

cornish/pubmed-eponyms

Python scripts for searching Pubmed using Biopython and working with eponymous terms

Language: Python - Size: 6.09 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

mrdanieleze/Genomic-Sequence-Comparison-Code-GSCC-

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

Language: Python - Size: 26.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

widdowquinn/2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

Language: HTML - Size: 105 MB - Last synced at: 14 days ago - Pushed at: about 7 years ago - Stars: 20 - Forks: 11

RK900/Flu-Prediction

Predicting Future Influenza Virus Sequences with Machine Learning

Language: Python - Size: 1.73 MB - Last synced at: 10 months ago - Pushed at: about 7 years ago - Stars: 30 - Forks: 14

ldrobnik/bioseq-api

A simple API to handle nucleotide sequences

Language: Python - Size: 14.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

mansikath/Fasta-to-Genbank-Converter

A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.

Language: Python - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

vikredz/Bio-Informatics

Welcome to my Bioinformatics Analysis Repository. This repository is dedicated to my work on analyzing the Human-CAT/RAT/Chimpanzee species and MultiSARS-Like.maf file, a project that explores genomic similarities and differences among SARS-like viruses. Python (Biopython, Pandas)

Size: 43.8 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Takkoona/treemer

Python practice

Language: Python - Size: 42 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

giplonis/gene-search-comparison

A simple gene search and comparison engine.

Language: Python - Size: 83 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

vaalarias/SpikeProteinAnalysis

Nuestro enfoque central es profundizar la comprensión de la variabilidad presente en las secuencias de la proteína-S de diferentes cepas del virus SARS-Cov-2.

Language: Python - Size: 215 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mansikath/DNASequenceTranslator

This repository empowers you to perform operations such as generating complementary sequences, translating DNA to RNA, and identifying open reading frames (ORFs) with ease. Whether you're a bioinformatician, geneticist, or enthusiast, this tool simplifies complex genetic code tasks, making it a valuable resource for genomic research and analysis.

Language: Python - Size: 3.91 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

madison-freeman/SARS-CoV-2-spike-protein-visualization

Built interactive 3D models of SARS-CoV-19 spike (S) protein structures and generated high-quality images using biological sequence data stored in FASTA, PDB, and XML format (for educational purposes)

Language: Jupyter Notebook - Size: 6.02 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0