protein-structure 446 bioinformatics 134 protein 88 structural-biology 55 python 54 pdb 50 deep-learning 45 machine-learning 42 protein-sequences 42 proteins 31 computational-biology 30 structural-bioinformatics 24 protein-design 24 protein-protein-interaction 23 protein-data-bank 22 protein-sequence 20 alphafold2 20 pdb-files 18 pytorch 18 pymol 16 visualization 15 protein-structure-prediction 15 drug-discovery 14 biology 14 docking 12 molecular-dynamics 12 protein-folding 12 alphafold 11 python3 11 genomics 11 molecular-modeling 10 dataset 10 protein-ligand-interactions 9 java 9 bioinformatics-tool 9 web-service 8 graph-neural-networks 8 prediction 7 antibody 7 computational-chemistry 7 molecule 7 jupyter-notebook 7 biopython 7 rna-structure 7 research 7 molecular-structures 7 mutations 6 artificial-intelligence 6 data-science 6 mmcif 6 molecular-dynamics-simulation 6 pdb-parser 6 rosetta 6 sequence-alignment 6 dna 6 database 6 rmsd 6 classification 6 bioinformatics-pipeline 6 tensorflow 6 amino-acids 6 protein-docking 6 virtual-screening 5 generative-model 5 keras 5 clustering 5 scientific-computing 5 molecular-biology 5 peptides 5 pymol-plugin 5 antibody-design 5 sars-cov-2 5 chemistry 5 diffusion-models 5 molecular-graphics 5 geometric-deep-learning 5 data-visualization 5 molecular-simulation 5 dna-sequences 4 structure 4 python-library 4 r 4 rna 4 benchmark 4 proteomics 4 cheminformatics 4 drug-design 4 chemoinformatics 4 saxs 4 pdb-database 4 biochemistry 4 neural-network 4 secondary-structure 4 literate-programming 4 protein-language-model 4 alignment 4 protein-domains 4 alphafold-multimer 4 uniprot 4 protein-modeling 4