Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: mmcif
project-gemmi/gemmi
macromolecular crystallography library and utilities
Language: C++ - Size: 8.57 MB - Last synced: about 1 hour ago - Pushed: about 12 hours ago - Stars: 198 - Forks: 38
rtviii/riboxyz
Datatypes for the ribosome.
Language: C - Size: 721 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0
refresh-bio/protestar
Protein Structure Archiver
Language: C++ - Size: 34.9 MB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 6 - Forks: 0
MooersLab/jupyterlabpymolpysnips
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
Language: HTML - Size: 8.76 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 19 - Forks: 5
ihmwg/IHMCIF
📖 mmCIF support for hybrid/integrative models
Language: Shell - Size: 55.3 MB - Last synced: 16 days ago - Pushed: 17 days ago - Stars: 20 - Forks: 3
berrisfordjohn/adding_stats_to_mmcif
Program to add sequences and data collection statistics to mmCIF files for PDB deposition
Language: Python - Size: 2.76 MB - Last synced: 17 days ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
PDB-REDO/libcifpp
Library containing code to manipulate mmCIF and PDB files
Language: C++ - Size: 10.5 MB - Last synced: 29 days ago - Pushed: 30 days ago - Stars: 27 - Forks: 9
rdk/p2rank
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Language: Groovy - Size: 365 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 216 - Forks: 32
Ruibin-Liu/MolDF
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.
Language: Python - Size: 2.37 MB - Last synced: 14 days ago - Pushed: 17 days ago - Stars: 7 - Forks: 1
samuellimce/pdbx
A PDBx/mmCIF-format parser and extractor.
Size: 1.95 KB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1
project-gemmi/wasm
Parts of Gemmi in WebAssembly.
Language: HTML - Size: 4.95 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 1
bartongroup/ProteoFAV
Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation
Language: Python - Size: 18.4 MB - Last synced: 20 days ago - Pushed: 3 months ago - Stars: 3 - Forks: 0
douweschulte/pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
Language: Rust - Size: 16.8 MB - Last synced: 5 months ago - Pushed: 6 months ago - Stars: 34 - Forks: 11
biomadeira/BioDownloader
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
Language: Python - Size: 47.9 KB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 9 - Forks: 0
amaurypm/struct2seq
Extract chains' and polypeptides' sequences from PDB or mmCIF files.
Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
project-gemmi/mmcif-benchmark
Benchmarks for reading and interpreting mmCIF files
Language: Python - Size: 19.5 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0
project-gemmi/periodic-table
Search PDB by elements.
Language: JavaScript - Size: 159 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 9 - Forks: 20
JMB-Scripts/CIF-to-PDB
Convert in batch CIF files to PDB
Language: Python - Size: 5.86 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0
cusbg/AHoJ-project
:wave: Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
Size: 5.7 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1
yokochi47/pdbx-validation
The pdbx-validation is a generation tool of alternative wwPDB validation reports
Language: HTML - Size: 368 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 1
haddocking/haddock2mmcif
Encode information from a HADDOCK run to a cif file to be deposited in PDB-Dev.
Language: Python - Size: 74.6 MB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0
MooersLab/orgpymolpysnips
Supports the use of PyMOL in literate programming in org-mode, which is best run in Emacs.
Language: YASnippet - Size: 1.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 0
jgreener64/pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
Language: Python - Size: 1.93 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 37 - Forks: 6
multimeric/mmcifix
Fixes mmCIF protein structure files
Language: Python - Size: 253 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1
justinmc/tiny-molecule
A small, developer-friendly 3D molecule viewer for the modern web
Language: JavaScript - Size: 8.07 MB - Last synced: 21 days ago - Pushed: almost 6 years ago - Stars: 4 - Forks: 0
