outbreak-info/python-outbreak-info

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

Language: Jupyter Notebook - Size: 25.3 MB - Last synced: about 4 hours ago - Pushed: about 9 hours ago - Stars: 6 - Forks: 1

griffithlab/civic-v2

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

Language: TypeScript - Size: 70.9 MB - Last synced: about 8 hours ago - Pushed: about 10 hours ago - Stars: 19 - Forks: 4

varfish-org/clinvar-this

ClinVar Submission API Made Easy

Language: Python - Size: 754 KB - Last synced: about 10 hours ago - Pushed: 6 days ago - Stars: 6 - Forks: 1

target/row-types

A Haskell library for open records and variants using closed type families and type literals

Language: Haskell - Size: 466 KB - Last synced: about 11 hours ago - Pushed: almost 2 years ago - Stars: 112 - Forks: 12

bigbio/pgt-pangenome

Protegenomics analysis based on Pangenome references

Language: Jupyter Notebook - Size: 538 MB - Last synced: about 10 hours ago - Pushed: about 11 hours ago - Stars: 0 - Forks: 0

PacificBiosciences/HiPhase

Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

Language: Rust - Size: 894 KB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 51 - Forks: 4

Unleash/unleash

Open-source feature management solution built for developers.

Language: TypeScript - Size: 202 MB - Last synced: 26 days ago - Pushed: 27 days ago - Stars: 10,211 - Forks: 635

vidboda/MobiDetails

WebApp for DNA variants interpretation

Language: Python - Size: 13.7 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 12 - Forks: 6

alfonsobries/vue-tailwind

Vue UI components with configurable classes ready for TailwindCSS

Language: TypeScript - Size: 4.39 MB - Last synced: about 20 hours ago - Pushed: about 1 year ago - Stars: 2,129 - Forks: 139

walaj/svaba

Structural variation and indel detection by local assembly

Language: C++ - Size: 3.72 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 224 - Forks: 43

eels/tailwind-compose

Easily abstract and compose your React Tailwind classes

Language: TypeScript - Size: 272 KB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 0

paarthenon/variant

Variant types in TypeScript

Language: TypeScript - Size: 6.76 MB - Last synced: 5 days ago - Pushed: 2 months ago - Stars: 177 - Forks: 3

bento-platform/bento_variant_service 📦

Variant search and GA4GH Beacon microservice for the Bento platform.

Language: Python - Size: 389 KB - Last synced: 6 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

mmlacak/crochess

Croatian Chess is a collection of various chess variants, starting as a simple and natural enhancement to classical chess and growing ever more complex with each new variant.

Language: Python - Size: 80.8 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 1 - Forks: 2

thomaspoignant/go-feature-flag

GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️

Language: Go - Size: 3.19 GB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 1,073 - Forks: 110

hodcroftlab/covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Language: Python - Size: 1.15 GB - Last synced: 7 days ago - Pushed: 8 days ago - Stars: 315 - Forks: 113

SamuelNicaise/variantconvert

A customizable genetic variants file format converter.

Language: Python - Size: 6.55 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 9 - Forks: 2

gauravcodepro/bcftools-filter

making bcftools filtering easy. bcftools_filter which will allow for the faster filtering of the variant calls according to the allelic depth and the tags using simple to overlap approaches as compare to implementing the regular patterns.

Language: Python - Size: 159 KB - Last synced: 2 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

rafalopespx/covidtrackerct Fork of duckien242/covidtrackerct

ShinyApp repo for the CovidTracker, any details further than the codes here available please send an email to rafael.lopes at yale.edu

Language: R - Size: 103 MB - Last synced: 8 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

dneustadt/DnVariantSwitch 📦

Shopware plugin to switch variants in basket and checkout views

Language: PHP - Size: 38.1 KB - Last synced: 8 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

clingen-data-model/website-clinicalgenome-search

SEARCH V4 :: The aim of the project is to integrate ClinGen's internal data services and public external data services around a common user experience to ensure clinically relevant knowledge about genes and variants is available for use in precision medicine and research.

Language: PHP - Size: 284 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 4 - Forks: 3

EUCANCan/prepy-wrapper

Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.

Language: Python - Size: 25.4 KB - Last synced: 8 days ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

aloisdeniel/derived_colors

Generate color variants.

Language: Dart - Size: 154 KB - Last synced: 8 days ago - Pushed: over 1 year ago - Stars: 61 - Forks: 4

cpwardell/FiNGS

Filters for Next Generation Sequencing

Language: Python - Size: 4.31 MB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 9 - Forks: 0

jdgabriel/masterclass-nextjs-tailwind

Repository for study tailwind. components variants.

Language: TypeScript - Size: 579 KB - Last synced: 12 days ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

opentargets-archive/postgap-api 📦

A GraphQL API for serving POSTGAP data

Language: JavaScript - Size: 3.4 MB - Last synced: 12 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

rafalopespx/Variant_infections_rate

Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'

Language: R - Size: 559 MB - Last synced: 8 days ago - Pushed: 13 days ago - Stars: 1 - Forks: 0

biothings/myvariant.info

MyVariant.info: A BioThings API for human variant annotations

Language: Python - Size: 12.9 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 85 - Forks: 32

kantale/MutationInfo

Tool to retrieve location information of genetic variants

Language: Jupyter Notebook - Size: 386 KB - Last synced: 14 days ago - Pushed: over 4 years ago - Stars: 6 - Forks: 3

HKU-BAL/ClairS-TO

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Language: Python - Size: 1.93 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 29 - Forks: 2

STEPBible/STEPBible-Data

Data created for www.STEPBible.org, available to other projects under CC BY 4.0

Size: 522 MB - Last synced: 9 days ago - Pushed: 15 days ago - Stars: 106 - Forks: 33

Brille24/SyliusTierpricePlugin

A plugin for Sylius that implements tier pricing

Language: PHP - Size: 983 KB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 44 - Forks: 36

MI2DataLab/crs19-monitor

Monitor of SARS-CoV-2 variants and mutations

Language: CSS - Size: 14.3 MB - Last synced: 16 days ago - Pushed: over 2 years ago - Stars: 4 - Forks: 6

mutalyzer/algebra

A Boolean Algebra for Genetic Variants

Language: Python - Size: 854 KB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 10 - Forks: 2

joe-bell/cva

Class Variance Authority

Language: TypeScript - Size: 6.74 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 5,205 - Forks: 101

sourceduty/Cancer

🧬 Cancer research, simulations and science.

Size: 89.8 KB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 0 - Forks: 0

codebayu/style-variants

The Package for creating dynamic and reusable styles in React Native

Language: TypeScript - Size: 157 KB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

swvanderlaan/MetaGWASToolKit

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

Language: Shell - Size: 477 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 12 - Forks: 2

dfornika/ncov-watch-nf

Detect SARS-CoV-2 variants using outputs from the ncov2019-artic-nf pipeline and ncov-watch.py

Language: Python - Size: 4.88 KB - Last synced: 20 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

BCCDC-PHL/type-variants-nf

Detect SARS-CoV-2 variants using outputs from the ncov2019-artic-nf pipeline

Language: Python - Size: 21.5 KB - Last synced: 20 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

codeinred/recursive-variant

Recursive Variant: A simple library for Recursive Variant Types

Language: C++ - Size: 543 KB - Last synced: 14 days ago - Pushed: over 2 years ago - Stars: 77 - Forks: 3

nextui-org/tailwind-variants

🦄 Tailwindcss first-class variant API

Language: TypeScript - Size: 441 KB - Last synced: 26 days ago - Pushed: about 1 month ago - Stars: 1,914 - Forks: 56

anuragraj/PgxSAVy

A tool for quality control and annotation of variant peptides after FDR in proteogenomics

Language: Perl - Size: 1.98 MB - Last synced: 24 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

iossifovlab/gpf

GPF: Genotypes and Phenotypes in Families

Language: Python - Size: 75.3 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 1 - Forks: 0

Andreyhuey/portfolio

Step into my world of code and creativity, where pixels come alive and ideas turn into digital realities. I'm thrilled to have you here, exploring my projects, skills, and passion for technology.

Language: JavaScript - Size: 41.7 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 1 - Forks: 0

paarthenon/kind-of-super

A demo project for Variant

Language: TypeScript - Size: 229 KB - Last synced: 26 days ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

superphy/prairiedog_go

probability emitting pangenome graphs

Language: Go - Size: 7.71 MB - Last synced: 26 days ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0

JollyGrin/unbrewed-decks-ssg

Static Site Generation for unbrewed deck selector. Shouldn't call the api every time.

Language: CSS - Size: 13.4 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

luntergroup/octopus

Bayesian haplotype-based mutation calling

Language: C++ - Size: 137 MB - Last synced: about 15 hours ago - Pushed: 9 months ago - Stars: 296 - Forks: 37

kishwarshafin/pepper

PEPPER-Margin-DeepVariant

Language: Python - Size: 36.1 MB - Last synced: 6 days ago - Pushed: 4 months ago - Stars: 231 - Forks: 41

chempogonzalez/tailwind-semantic-setup

🧬 Tailwind preset to enable a good semantic setup for better Design Systems

Language: JavaScript - Size: 800 KB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 2 - Forks: 0

reactivepixels/recast

Build components once. Use everywhere.

Language: TypeScript - Size: 2.78 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

exomiser/Exomiser

A Tool to Annotate and Prioritize Exome Variants

Language: Java - Size: 279 MB - Last synced: 23 days ago - Pushed: about 2 months ago - Stars: 180 - Forks: 54

ga4gh/ga4gh-server 📦

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

Language: Python - Size: 10.1 MB - Last synced: 25 days ago - Pushed: over 6 years ago - Stars: 97 - Forks: 93

KarchinLab/CRAVAT

Size: 1000 Bytes - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

VCCRI/VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

Language: Python - Size: 2.09 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 8 - Forks: 3

Clinical-Genomics/raredisease Fork of nf-core/raredisease

CG's rare disease pipeline in next flow, see the main repo here 👇

Language: Nextflow - Size: 11 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 5 - Forks: 1

G3root/react-cva

Class Variance Authority helper for react

Language: TypeScript - Size: 116 KB - Last synced: 29 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 1

tgen/GemDb

GemDb mongo variants/annotations hub

Language: Python - Size: 745 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1

Hansi-Thewarapperuma/Inherited_Risk_Detector

Identification of cancer-causing variants

Language: Python - Size: 7.74 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 2 - Forks: 0

miniwinwm/miniwinwm

Open source embedded window manager with overlapped windows. This project is actively maintained and free support is provided via the website. New features can be added on request. Consultancy can provided for commercial use.

Language: C - Size: 149 MB - Last synced: 16 days ago - Pushed: about 1 year ago - Stars: 33 - Forks: 3

XuewenWangUGA/VarSeqStitcher

A novel bioinformatics tool in Java to build phased long alleles of STR+SNP+InDel from VCF file

Language: HTML - Size: 91.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

doniaskima/react-crafitify

React-Crafitify is a versatile React component library designed to enhance the user interface of your web applications. With a focus on aesthetics and usability, React-Crafitify provides a collection of customizable UI components that can seamlessly integrate into your projects.

Language: JavaScript - Size: 17.6 MB - Last synced: 30 days ago - Pushed: 5 months ago - Stars: 35 - Forks: 1

JosefLitos/Enhanced-Faithcraft

Minecraft x32 Faithful brick/ore variation and 3D (x16 compatible) model addon

Language: Shell - Size: 48.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

guilhermerodz/atomic-variants 📦

Tiny utility for handling atomic CSS

Language: TypeScript - Size: 104 KB - Last synced: about 13 hours ago - Pushed: over 1 year ago - Stars: 12 - Forks: 2

umccr/vcf_stuff

📊Evaluating, filtering, comparing, and visualising VCF

Language: Jupyter Notebook - Size: 40.3 MB - Last synced: 20 days ago - Pushed: about 1 year ago - Stars: 26 - Forks: 3

ding-lab/CharGer

Characterization of Germline variants

Language: Python - Size: 16.8 MB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 92 - Forks: 37

flekschas/enhancer-gene-vis

A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.

Language: TypeScript - Size: 39.6 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 3

andrejewski/tagmeme

Simple tagged unions

Language: JavaScript - Size: 96.7 KB - Last synced: 6 days ago - Pushed: almost 4 years ago - Stars: 20 - Forks: 1

lynnlangit/TeamTeri

Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure

Language: Shell - Size: 134 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 51 - Forks: 16

XuewenWangUGA/StrPhaser

The novel bioinformatics tool for building phased STR allelic sequences from VCF file

Size: 46.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

brentp/rare-disease-wf

(WIP) best-practices workflow for rare disease

Language: Nextflow - Size: 548 KB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 56 - Forks: 8

DecodeGenetics/graphtyper

Population-scale genotyping using pangenome graphs

Language: C++ - Size: 1.56 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 159 - Forks: 20

sigven/gvanno

Generic human DNA variant annotation pipeline

Language: Python - Size: 13.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 44 - Forks: 11

VCCRI/dv-trio

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

Language: Shell - Size: 165 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 8 - Forks: 1

tycheleturner/ElGenomaPequeno

El genoma pequeño - analysis workflow for "the little genome"

Language: R - Size: 931 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1

FrankBro/ordo

Ordo: A minimalist language with row polymorphism

Language: Rust - Size: 3.14 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 71 - Forks: 3

vitorlinsbinski/dashboard-with-tailwind

A dashboard to learn about Tailwind CSS, which is a utility-first CSS framework that simplifies web development by offering a collection of pre-designed utility classes.

Language: TypeScript - Size: 505 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

c-j-lh/wraparound-reversi

wraparound reversi, a reversi variant, with a terminal and discord bot interface. Bots available include MCTS and greedy heuristics.

Language: Python - Size: 53.7 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

pedro-mendonca/GP-Automatic-Variants

Plugin for @GlotPress to manage automatic converted variants.

Language: PHP - Size: 3.88 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

quinlan-lab/pathoscore

pathoscore evaluates variant pathogenicity tools and scores.

Language: Python - Size: 158 KB - Last synced: 16 days ago - Pushed: about 2 years ago - Stars: 21 - Forks: 7

danymukesha/ensembl-variant-lookup

Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.

Language: Python - Size: 26.7 MB - Last synced: 21 days ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

bartongroup/ProteoFAV

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

Language: Python - Size: 18.4 MB - Last synced: 13 days ago - Pushed: 2 months ago - Stars: 3 - Forks: 0

G3viz/g3viz

Lollipop-diagram to interactively visualize genetic mutations

Language: JavaScript - Size: 60 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 30 - Forks: 17

IFB-ElixirFr/EBAII

Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"

Language: HTML - Size: 490 MB - Last synced: 24 days ago - Pushed: about 2 months ago - Stars: 11 - Forks: 20

Jackardios/react-tailwind-variants

React Stitches-like variants API for tailwindcss classes

Language: TypeScript - Size: 160 KB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 16 - Forks: 1

samj1912/ns3-sim

An ns3 simulation script to compare various TCP variants under congestion

Language: C++ - Size: 81.1 KB - Last synced: 22 days ago - Pushed: about 7 years ago - Stars: 12 - Forks: 9

z0al/react-native-styled.macro 📦

⚛️ A Utility-First Styling Library for React Native

Language: TypeScript - Size: 1.86 MB - Last synced: 11 days ago - Pushed: almost 2 years ago - Stars: 92 - Forks: 8

Tschipcraft/more_mobs

Humanoid mobs get new variants through over 85 custom player heads or unused vanilla mobs! No Resource Pack needed!

Language: mcfunction - Size: 4.94 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 3 - Forks: 0

iliocatallo/typista

ML-inspired structured types.

Language: JavaScript - Size: 326 KB - Last synced: 14 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

mmterpstra/molgenis-c5-TumorNormal

Language: Shell - Size: 12.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

SMFTricks/Bluez

Nice blue theme with CSS3 and color variants

Language: PHP - Size: 471 KB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

brunocodutra/alloy

Embrace (post) modern C++

Language: C++ - Size: 298 KB - Last synced: 20 days ago - Pushed: over 2 years ago - Stars: 9 - Forks: 1

cccnrc/plot-VCF

visual analysis of your VCF files

Language: R - Size: 75.9 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 12 - Forks: 2

agduncan94/civicr

An R package for interacting with the CIViC API

Language: R - Size: 187 KB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

valiantlynx/animevariant

A decentralized nft marketplace. each nft cost an initial $ 5 to make. You own the nft and one can buy and sell as well

Language: Motoko - Size: 5.72 MB - Last synced: 5 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

nbroguiere/burgertools

Bundle of Useful scRNA-seq Gating Tools Extending seuRat

Language: R - Size: 43.9 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

Clinical-Genomics/MIP

Mutation Identification Pipeline. Read the latest documentation:

Language: Perl - Size: 71.7 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 37 - Forks: 10

Jackardios/react-classname-variants

Stitches-like styled components with plain class names

Language: TypeScript - Size: 236 KB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

bpucker/NAVIP

Neighborhood-Aware Variant Impact Predictor

Language: Python - Size: 179 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1