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GitHub / VCCRI / dv-trio
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/VCCRI%2Fdv-trio
Stars: 8
Forks: 1
Open Issues: 2
License: bsd-3-clause
Language: Shell
Repo Size: 165 KB
Dependencies: pending
Created: over 5 years ago
Updated: 3 months ago
Last pushed: over 3 years ago
Last synced: about 2 months ago
Topics: father-mother-child, mendelian-genetics, variant-calling, variants