cBioPortal/cbioportal-frontend

React Frontend of cBioPortal :tada:

Language: TypeScript - Size: 286 MB - Last synced at: about 2 hours ago - Pushed at: about 2 hours ago - Stars: 123 - Forks: 338

AlexandrovLab/HRProfiler

Homologous Recombination Profiler (HRProfiler) is a classification tool that predicts the HRD probability for both whole-genome and exome-sequenced samples using HRD-specific mutation and copy number features.

Language: Python - Size: 294 KB - Last synced at: about 19 hours ago - Pushed at: about 21 hours ago - Stars: 3 - Forks: 0

cBioPortal/cbioportal

cBioPortal for Cancer Genomics

Language: Java - Size: 356 MB - Last synced at: about 22 hours ago - Pushed at: about 22 hours ago - Stars: 827 - Forks: 694

uclahs-cds/package-moPepGen

Multi-Omics Peptide Generator

Language: Python - Size: 9.42 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 23 - Forks: 4

dellytools/delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Language: C++ - Size: 37.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 477 - Forks: 139

likelet/CaMutQC

An R package for mutation quality control of cancer genomic sequening dataset

Language: R - Size: 70.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 7 - Forks: 0

kharchenkolab/numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

Language: R - Size: 390 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 186 - Forks: 25

PoisonAlien/maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Language: R - Size: 72.4 MB - Last synced at: 3 days ago - Pushed at: 19 days ago - Stars: 469 - Forks: 223

hw538/cfDNAPro

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

Language: R - Size: 2.71 MB - Last synced at: about 22 hours ago - Pushed at: about 1 month ago - Stars: 34 - Forks: 8

crazyhottommy/getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

Language: Shell - Size: 36.9 MB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 1,289 - Forks: 360

griffithlab/civic-v2

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

Language: TypeScript - Size: 87.6 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 24 - Forks: 5

brentp/somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Language: Nim - Size: 1.38 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 287 - Forks: 42

seandavi/awesome-cancer-variant-resources

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Size: 28.3 KB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 315 - Forks: 73

sigven/geneOncoX

Human gene annotations for the oncology domain

Language: R - Size: 43.1 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 6 - Forks: 0

KaiAragaki/tidyestimate

ESTIMATE tumor infiltration, the tidy way

Language: R - Size: 7.81 MB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 16 - Forks: 2

AlexandrovLab/SigProfilerExtractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Language: Python - Size: 166 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 162 - Forks: 55

AmpliconSuite/AmpliconSuite-pipeline

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

Language: Python - Size: 19.1 MB - Last synced at: 17 days ago - Pushed at: 20 days ago - Stars: 67 - Forks: 28

ICAGEN/muscadet

multiomics single-cell copy number alterations detection

Language: R - Size: 23.8 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 1

sigven/pcgr

Personal Cancer Genome Reporter (PCGR)

Language: R - Size: 85.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 266 - Forks: 48

BesenbacherLab/lionheart

LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.

Language: Python - Size: 726 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 5 - Forks: 1

single-cell-genetics/XClone

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

Language: Python - Size: 4.44 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 36 - Forks: 5

tobiasrausch/lorax

A long-read analysis toolbox for cancer and population genomics

Language: C++ - Size: 205 KB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 23 - Forks: 1

broadinstitute/depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

Language: HTML - Size: 429 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 119 - Forks: 23

genome-spy/genome-spy

A visualization grammar and GPU-accelerated toolkit for genomic data

Language: JavaScript - Size: 14.4 MB - Last synced at: 21 days ago - Pushed at: 23 days ago - Stars: 182 - Forks: 11

udiram/Glioblastoma_analysis

Detecting various characteristics of glioblastoma using Deep Learning

Language: Python - Size: 1.47 GB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 1 - Forks: 2

Melakutad/nexus-cli

Nexus CLI is a powerful tool for contributing proofs to the Nexus network. Join our distributed prover network today! 🚀💻

Language: Rust - Size: 1.63 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

Sayitobar/fishplotpy

A Python implementation for visualizing clonal evolution dynamics using "fish plots" (also known as Muller plots).

Language: Python - Size: 484 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 2 - Forks: 0

nodrogluap/tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

Language: Python - Size: 381 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 7 - Forks: 1

elifmgungor/cfDNA-ResponsePrediction

Bioinformatics pipeline for predicting cancer treatment response using cfDNA nucleosome signals.

Size: 3.91 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

ncihtan/htan-portal

The HTAN Data Portal

Language: TypeScript - Size: 397 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 11 - Forks: 13

NCI-CGR/GwasQcPipeline

The CGR GWAS QC processing workflow.

Language: Python - Size: 89.4 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 2

ctglab/ENEO

Language: Python - Size: 505 MB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 2 - Forks: 0

AlexandrovLab/SigProfilerMatrixGenerator

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

Language: Python - Size: 1 GB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 109 - Forks: 40

BenTremblay1/CCSU_Special_Project_

Predicting the Probability or Occurrence of Relapse for Colorectal Cancer Patients using Gene Expression Data

Size: 464 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

IBCHgenomic/rustcivic

rust json client for civic database

Language: Rust - Size: 1.19 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

cbib/TrialMatchAI

TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI

Language: Python - Size: 43.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 1

lynnlangit/TeamTeri

Bioinformatics on GCP, AWS or Azure

Language: Shell - Size: 135 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 57 - Forks: 16

adamurban04/DataPulse

DataPulse: Framework for Statistical and Exploratory Data Analysis

Language: R - Size: 28.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

bioinform/somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Language: Python - Size: 65.7 MB - Last synced at: 14 days ago - Pushed at: about 1 month ago - Stars: 196 - Forks: 56

rhshah/IMPACT-Pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

Language: Perl - Size: 2.4 MB - Last synced at: 22 days ago - Pushed at: over 4 years ago - Stars: 57 - Forks: 9

umccr/gpgr

:books: Genomics Platform Group Reporter

Language: R - Size: 8.6 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 8 - Forks: 1

deepomicslab/INVAS

Language: Python - Size: 170 MB - Last synced at: 21 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

RoySoumik23/AutoMutSig_Pipeline

The automation pipeline processes mutation and clinical data, aligning and cleaning the inputs before performing a detailed analysis. It enables visualization and interpretation of mutation signatures with a focus on specific genes and cancer subtypes.

Language: R - Size: 106 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

nicholas-abad/REMIND-Cancer

Bioinformatics pipeline to identify and prioritize activating Promoter SNVs (pSNVs) using genomic, transcriptomic and annotation data.

Language: Jupyter Notebook - Size: 54.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

eweitz/ideogram

Chromosome visualization for the web

Language: JavaScript - Size: 156 MB - Last synced at: 20 days ago - Pushed at: 2 months ago - Stars: 301 - Forks: 74

AlexandrovLab/SigProfilerSimulator

SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Language: Python - Size: 8.44 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 19 - Forks: 5

nf-core/tumourevo

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

Language: Nextflow - Size: 2.51 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 17 - Forks: 5

Georgakopoulos-Soares-lab/cancer_model

Investigating the Impact of passenger mutations on cancer development

Language: Jupyter Notebook - Size: 7.38 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

Zaffe24/Costea-et-al.-2024

Scripts from Costea et al. 2024

Language: R - Size: 162 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

cbg-ethz/SCICoNE

Single-cell copy number calling and event history reconstruction.

Language: C++ - Size: 47 MB - Last synced at: about 2 months ago - Pushed at: 7 months ago - Stars: 24 - Forks: 8

iVis-at-Bilkent/pathway-mapper

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Language: TypeScript - Size: 65.8 MB - Last synced at: 16 days ago - Pushed at: over 1 year ago - Stars: 59 - Forks: 27

cpwardell/FiNGS

Filters for Next Generation Sequencing

Language: Python - Size: 4.34 MB - Last synced at: 17 days ago - Pushed at: 9 months ago - Stars: 12 - Forks: 0

AlexandrovLab/SigProfilerPlotting

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

Language: Python - Size: 89.7 MB - Last synced at: 14 days ago - Pushed at: 4 months ago - Stars: 48 - Forks: 15

BiomedSciAI/Geno4SD

An python omics data toolkit for the analysis across biological scales

Language: Jupyter Notebook - Size: 78.1 MB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 1

KrasnitzLab/RAIDS

Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms

Language: R - Size: 9.37 MB - Last synced at: 10 days ago - Pushed at: 2 months ago - Stars: 5 - Forks: 4

Anjaney10/MS_Thesis_Training

Training work in Prof. Mohit Kumar Jolly's Lab at IISc, Bengaluru

Language: Jupyter Notebook - Size: 3.22 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

tariqdaouda/pyGeno

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Language: Python - Size: 10.6 MB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 321 - Forks: 49

greenelab/tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data

Language: HTML - Size: 99.3 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 169 - Forks: 62

cancerbits/cancerbits.github.io

Lab website.

Language: HTML - Size: 3.09 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

roshan112-3/GeneMedX

Imagine a world where cancer treatment is as unique as your DNA.

Language: Jupyter Notebook - Size: 4.44 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

murphycj/AGFusion

Python package to annotate and visualize gene fusions.

Language: Python - Size: 345 MB - Last synced at: 4 days ago - Pushed at: 10 months ago - Stars: 63 - Forks: 26

cbg-ethz/Jnotype

Probabilistic modeling of high-dimensional binary data in JAX

Language: Python - Size: 286 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 3 - Forks: 0

navyapatel2123/cancer_prediction

This project implements a machine learning model (Logistic Regression) trained on the Breast Cancer dataset to predict if a tumor is benign or malignant. It includes a Python script for training the model, a terminal-based prediction tool, and a web application built with Streamlit for interactive predictions.

Language: Python - Size: 60.5 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

arsenij-ust/cbpManager

Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.

Language: Python - Size: 3.4 MB - Last synced at: 25 days ago - Pushed at: 7 months ago - Stars: 9 - Forks: 1

genome-nexus/genome-nexus

Backend server for Genome Nexus

Language: Java - Size: 17 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 41 - Forks: 44

UBC-Stat-ML/nowellpack

Blang library for cancer genomics

Language: Xtend - Size: 2.49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 7 - Forks: 3

umccr/dracarys

:dragon_face: DRAGEN workflow tidying :fire:

Language: R - Size: 15.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

AmpliconSuite/ecSimulator

Simulate ecDNA structures with user-specified properties.

Language: Python - Size: 57.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 3

nicholas-abad/pSNV-hunter

Comprehensive visualization tool / dashboard to investigate and select Promoter SNVs (pSNVs) for downstream validation

Language: Python - Size: 24.9 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

khasrawlab/TILproject

Uncovering Determinants of TIL Expansion in High-Grade Gliomas through Immunophenotyping, TCR Profiling, Single-Cell, Spatial Transcriptomics, and Proeteomics

Language: R - Size: 121 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

kevinhu/cancer_data

A unified downloader+preprocessor for cancer genomics datasets

Language: Python - Size: 669 KB - Last synced at: 24 days ago - Pushed at: over 1 year ago - Stars: 16 - Forks: 7

AlexandrovLab/SigProfilerExtractorR

An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Language: R - Size: 676 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 15 - Forks: 1

seandavi/ngCGH

Tools for producing pseudo-cgh of next-generation sequencing data

Language: Python - Size: 54.7 KB - Last synced at: 29 days ago - Pushed at: almost 9 years ago - Stars: 18 - Forks: 9

AlexandrovLab/SigProfilerClusters

Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.

Language: Python - Size: 1.7 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 12 - Forks: 1

mskcc/mimsi

Microsatellite Instability Classification using Multiple Instance Learning

Language: Python - Size: 376 MB - Last synced at: 18 days ago - Pushed at: 5 months ago - Stars: 24 - Forks: 8

joiningdata/lollipops

Lollipop-style mutation diagrams for annotating genetic variations.

Language: Go - Size: 2.49 MB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 189 - Forks: 70

woov2/Life_research_resources_AI_utilization_contest

[경진대회] 암환자 유전체 데이터의 변이 정보를 활용한 암종 분류 AI 모델 개발

Language: Jupyter Notebook - Size: 1.97 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

NagaComBio/TiNDA

Tumor in normal detection

Language: R - Size: 1.23 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 1

WCSCourses/Cancer_Genome_Analysis_2025 Fork of WCSCourses/Cancer_Genome_Analysis

Learn to analyse genomics data from cancer samples with hands-on practical exercises in mutation calling, driver gene identification, mutational signature analysis and RNA deconvolution.

Language: HTML - Size: 149 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

zhangxiaoyu11/OmiTrans

The first GANs-based omics-to-omics translation framework

Language: Python - Size: 9.86 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 5

CBIIT/icdc-model-tool

ICDC data model representations and build tools

Language: Perl - Size: 11.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 9 - Forks: 2

Syksy/curatedPCaData

Bioconductor R-package: Curated Prostate Cancer Data

Language: R - Size: 4.6 MB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 11 - Forks: 4

PoisonAlien/somaticfreq

knowledge-based genotyping of cancer hotspots from the tumor BAM files

Language: C - Size: 4.7 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4

cbg-ethz/metMHN

This is a adaptation to MHN so that it works on metastasis

Language: Python - Size: 44.7 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 4

seandavi/refinebioc

The bridge between refine.bio and Bioconductor

Language: R - Size: 10.8 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 2

bitscopic/BIAS-2015

Bitscopic Interpreting ACMG 2015 Standards

Language: Python - Size: 1.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 3

pllittle/ROKET

This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.

Language: HTML - Size: 2.91 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

Language: Python - Size: 210 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 80 - Forks: 35

mskcc/ACCESS-Pipeline

cfDNA Sequencing Pipeline with UMI

Language: Python - Size: 276 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 11 - Forks: 3

MikyLanfra/Prediction_on_Cancer_Cells Fork of fcantatore/BAIology

ML Project on Prediction on Cancerogenous Cells from Gene Expression based on AI-LAB Project, BAI Course, 2023

Language: Jupyter Notebook - Size: 149 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

kthuang20/CancerGenomics

Exploring the Genetic Effects of Wnt Pathway on Pancreatic Adenocarcinoma

Language: Jupyter Notebook - Size: 1.54 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

edawson/tidysig

A tidyverse-style package for plotting mutational signatures and context counts.

Language: R - Size: 505 KB - Last synced at: 5 months ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 1

AlexandrovLab/SigProfilerTopography

SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.

Language: Python - Size: 5.06 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 19 - Forks: 1

web4bio/webgen

WebGen Vertically Integrated Project

Language: JavaScript - Size: 20.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 10 - Forks: 27

machulsky61/Clasificador-Genomas

Proyecto de investigación en ML para identificar factores genéticos en pronóstico de lesiones pre-tumorales. Aprendizaje no supervisado para discernir perfiles genéticos distintivos entre grupos de buen y mal pronóstico, mejorando detección y tratamiento temprano del cáncer.

Language: Jupyter Notebook - Size: 6.92 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

lbulic1003/TumorMicroArr_ML

Tumor Identification Based on Machine Learning Analysis of Microarray Data

Language: Jupyter Notebook - Size: 785 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0

odagayev/cbio_py

A Python client for the cbioPortal Cancer API.

Language: Python - Size: 162 KB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 2

GooglingTheCancerGenome/sv-gen

Snakemake-based workflow for generating artificial genomes with structural variants

Language: Python - Size: 22.5 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 1

AlexandrovLab/SigProfilerPlottingR

An R wrapper for running the SigProfilerPlotting framework

Language: R - Size: 861 KB - Last synced at: 3 months ago - Pushed at: 7 months ago - Stars: 10 - Forks: 1

pankajchejara23/bioinformatics_book

This repository contains source codes for bioinformatics book.

Language: Jupyter Notebook - Size: 13.4 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0