cBioPortal/cbioportal-frontend

React Frontend of cBioPortal :tada:

Language: TypeScript - Size: 241 MB - Last synced: about 6 hours ago - Pushed: about 6 hours ago - Stars: 93 - Forks: 230

griffithlab/civic-v2

CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

Language: TypeScript - Size: 70.9 MB - Last synced: about 12 hours ago - Pushed: about 14 hours ago - Stars: 19 - Forks: 4

NCI-CGR/GwasQcPipeline

The CGR GWAS QC processing workflow.

Language: Python - Size: 86.7 MB - Last synced: about 12 hours ago - Pushed: about 14 hours ago - Stars: 0 - Forks: 1

genome-spy/genome-spy

A visualization grammar and GPU-accelerated toolkit for genomic data

Language: JavaScript - Size: 12.3 MB - Last synced: 1 day ago - Pushed: 4 days ago - Stars: 163 - Forks: 9

PoisonAlien/maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

Language: R - Size: 70.1 MB - Last synced: about 5 hours ago - Pushed: 5 days ago - Stars: 420 - Forks: 215

eweitz/ideogram

Chromosome visualization for the web

Language: JavaScript - Size: 139 MB - Last synced: 25 days ago - Pushed: 4 months ago - Stars: 277 - Forks: 68

umccr/gpgr

:books: Genomics Platform Group Reporter

Language: R - Size: 8.16 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 8 - Forks: 1

ncihtan/htan-portal

The HTAN Data Portal

Language: TypeScript - Size: 173 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 9 - Forks: 10

cancerbits/cancerbits.github.io

Lab website.

Language: HTML - Size: 2.9 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

uclahs-cds/package-moPepGen

Multi-Omics Peptide Generator

Language: Python - Size: 9.22 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 5 - Forks: 1

NKI-CCB/sobolev_alignment

Sobolev alignment of deep probabilistic models for comparing single cell profiles

Language: Python - Size: 3.76 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 5 - Forks: 2

udiram/Glioblastoma_analysis

Detecting various characteristics of glioblastoma using Deep Learning

Language: Python - Size: 1.47 GB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 2 - Forks: 2

genome-nexus/genome-nexus

Backend server for Genome Nexus

Language: Java - Size: 17 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 38 - Forks: 40

crazyhottommy/getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

Language: Shell - Size: 37.8 MB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 1,103 - Forks: 333

kevinhu/mdm4-splicing

Computational analysis of RPL22 alterations and impact on MDM4 splicing

Language: Jupyter Notebook - Size: 938 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 0 - Forks: 0

broadinstitute/depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

Language: HTML - Size: 403 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 98 - Forks: 22

kharchenkolab/numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

Language: R - Size: 367 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 150 - Forks: 22

brentp/somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Language: Nim - Size: 1.41 MB - Last synced: about 19 hours ago - Pushed: 3 months ago - Stars: 254 - Forks: 35

AmpliconSuite/AmpliconSuite-pipeline

A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

Language: Python - Size: 19 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 47 - Forks: 25

dellytools/delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Language: C++ - Size: 37.5 MB - Last synced: about 19 hours ago - Pushed: 2 months ago - Stars: 401 - Forks: 136

mskcc/mimsi

Microsatellite Instability Classification using Multiple Instance Learning

Language: Python - Size: 376 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 19 - Forks: 5

cpwardell/FiNGS

Filters for Next Generation Sequencing

Language: Python - Size: 4.31 MB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 9 - Forks: 0

AlexandrovLab/SigProfilerMatrixGenerator

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

Language: Python - Size: 1010 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 94 - Forks: 32

fabio-alfieri/mutation_compensation

Language: R - Size: 1.6 MB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 2 - Forks: 2

sigven/geneOncoX

Human gene annotations for the oncology domain

Language: R - Size: 40.6 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 6 - Forks: 0

lbulic1003/TumorMicroArr_ML-2024

Tumor Identification Based on Machine Learning Analysis of Gene Expression (2024)

Language: Jupyter Notebook - Size: 778 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 1 - Forks: 0

Amandahsr/PredictingGeneEssentiality_CS4220

NUS CS4220: Building a Weighted Gaussian Naive Bayes Model for prediction of gene essentiality in cancer cell-lines.

Language: R - Size: 298 KB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 0 - Forks: 1

umccr/dracarys

:dragon_face: UMCCR workflow tidying :fire:

Language: R - Size: 10.6 MB - Last synced: 20 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0

bbennett80/pedigree

A simple web app for constructing pedigrees for genetic cancer risk assessment.

Language: JavaScript - Size: 238 KB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 0 - Forks: 0

danilotat/RNA-neoflow

Snakemake workflow to profile MHC-I neoepitopes with bulk tumor RNAseq data

Language: Python - Size: 211 MB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 1 - Forks: 1

caravagnalab/nf-core-evoverse

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

Size: 280 KB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 2

AlexandrovLab/SigProfilerExtractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Language: Python - Size: 166 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 145 - Forks: 50

mentatpsi/RandomizedCancerGenomics

An implementation of Machine Learning and Data Science on a Breast Cancer study from Memorial Sloan Kettering Cancer Center from 2018. All data was made available on cBioPortal.

Language: Jupyter Notebook - Size: 3.69 MB - Last synced: 23 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

akram-mohammed/CancerDiscover Fork of HelikarLab/CancerDiscover

Open-source command-line pipeline for cancer type classification of high-throughput data using machine learning.

Language: Perl - Size: 64.2 MB - Last synced: 24 days ago - Pushed: over 6 years ago - Stars: 2 - Forks: 1

cBioPortal/cbioportal

cBioPortal for Cancer Genomics

Language: Java - Size: 310 MB - Last synced: 26 days ago - Pushed: about 1 month ago - Stars: 551 - Forks: 420

bioinform/somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Language: Python - Size: 65.6 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 190 - Forks: 53

zafarali/tumorheterogeneity

A more powerful analysis of tumor heterogeneity

Language: Jupyter Notebook - Size: 4.88 MB - Last synced: 26 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1

tariqdaouda/pyGeno

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Language: Python - Size: 10.6 MB - Last synced: 21 days ago - Pushed: 7 months ago - Stars: 307 - Forks: 52

hw538/cfDNAPro

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

Language: R - Size: 2.67 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 22 - Forks: 2

UBC-Stat-ML/nowellpack

Blang library for cancer genomics

Language: Xtend - Size: 2.48 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 3

raphael-group/scarlet

SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tumors) is an algorithm that reconstructs tumor phylogenies from single-cell DNA sequencing data. SCARLET uses a loss-supported model that constrains mutation losses based on observed copy-number data.

Language: Limbo - Size: 287 KB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 7 - Forks: 4

raphael-group/SBMClone

SBMClone, a method for recovering tumor clonal composition from sparse single-cell mutation data

Language: Python - Size: 266 KB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 8 - Forks: 2

cbg-ethz/metMHN

This is a adaptation to MHN so that it works on metastasis

Language: Python - Size: 44.4 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 4 - Forks: 2

Hansi-Thewarapperuma/Inherited_Risk_Detector

Identification of cancer-causing variants

Language: Python - Size: 7.74 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 2 - Forks: 0

AlexandrovLab/SigProfilerMatrixGeneratorR

R wrapper for utilizing the SigProfilerMatrixGenerator framework

Language: R - Size: 1.42 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 20 - Forks: 4

TomKellyGenetics/thesis

Thesis prepared in LaTeX for submission to the University of Otago (in Genetics)

Language: TeX - Size: 632 MB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

alirezaomidi/cancerdag

Implementation of the paper "Learning Cancer Progression Network from Mutation Allele Frequencies", ICML Compbio 2020

Language: Jupyter Notebook - Size: 1.72 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 5 - Forks: 1

AlexandrovLab/SigProfilerTopography

SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.

Language: Python - Size: 4.67 MB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 14 - Forks: 1

sps41/Dr-Stephen-Smith-CV

Size: 2.09 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

bioinform/ecTMB

Language: R - Size: 77.1 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 15 - Forks: 10

ding-lab/msisensor 📦

microsatellite instability detection using tumor only or paired tumor-normal data

Language: C++ - Size: 47.2 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 121 - Forks: 53

nygenome/lancet

Microassembly based somatic variant caller for NGS data

Language: C - Size: 8.67 MB - Last synced: 16 days ago - Pushed: almost 2 years ago - Stars: 153 - Forks: 33

tobiasrausch/lorax

A long-read analysis toolbox for cancer and population genomics

Language: C++ - Size: 170 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 18 - Forks: 1

agniRS/spatial-RNA-seq

spatial RNA-seq analysis in Glioblastoma using Python

Language: Jupyter Notebook - Size: 16.1 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

AlexandrovLab/SigProfilerPlotting

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.

Language: Python - Size: 89.8 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 44 - Forks: 13

antosalerno/TEPA_code

Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice

Language: R - Size: 648 KB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 0 - Forks: 0

AlexandrovLab/SigProfilerExtractorR

An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Language: R - Size: 674 KB - Last synced: about 2 months ago - Pushed: 8 months ago - Stars: 14 - Forks: 2

kieranrcampbell/clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

Language: R - Size: 4.11 MB - Last synced: 2 days ago - Pushed: over 3 years ago - Stars: 33 - Forks: 6

lynnlangit/TeamTeri

Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure

Language: Shell - Size: 134 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 51 - Forks: 16

umccr/umccrise

:snake: DRAGEN Tumor/Normal workflow post-processing

Language: Python - Size: 138 MB - Last synced: 20 days ago - Pushed: 8 months ago - Stars: 19 - Forks: 8

polyactis/Accucopy

Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.

Language: C++ - Size: 1.04 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 14 - Forks: 4

bhklab/consensusOV

Implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer.

Language: R - Size: 47.3 MB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

iVis-at-Bilkent/pathway-mapper

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Language: TypeScript - Size: 65.8 MB - Last synced: 15 days ago - Pushed: about 2 months ago - Stars: 55 - Forks: 28

PoisonAlien/somaticfreq

knowledge-based genotyping of cancer hotspots from the tumor BAM files

Language: C - Size: 4.7 MB - Last synced: about 5 hours ago - Pushed: over 2 years ago - Stars: 19 - Forks: 3

ding-lab/MuSiC2

identifying mutational significance in cancer genomes

Language: Perl - Size: 44.3 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 59 - Forks: 20

sbresnahan/TexasCancerGenomics

Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.

Language: HTML - Size: 331 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

web4bio/webgen

WebGen Vertically Integrated Project

Language: JavaScript - Size: 20.5 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 11 - Forks: 26

gerstung-lab/BaSISS

Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper

Language: Jupyter Notebook - Size: 30.9 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 22 - Forks: 2

BIMSBbioinfo/maui

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

Language: Jupyter Notebook - Size: 3.06 MB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 47 - Forks: 18

zhangxiaoyu11/OmiTrans

The first GANs-based omics-to-omics translation framework

Language: Python - Size: 9.86 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 9 - Forks: 5

KaiAragaki/tidyestimate

ESTIMATE tumor infiltration, the tidy way

Language: R - Size: 7.81 MB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 9 - Forks: 1

skr1/Imagene

ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files

Language: HTML - Size: 50.8 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 3

NCI-CGR/HPV_low_VAF_SNV_prediction

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

Language: Jupyter Notebook - Size: 17.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

Language: Python - Size: 210 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 69 - Forks: 26

Arvindiyer/iCTC_paper

Label free enrichment and characterisation of single circulating tumor cells

Language: C - Size: 172 KB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 3 - Forks: 0

cbg-ethz/SCATrEx

Map single-cell transcriptomes to copy number evolutionary trees.

Language: Python - Size: 3.79 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 13 - Forks: 1

cbg-ethz/scSomMerClock

Test for a molecular clock based on the phylogenetic tree inferred from single-cell DNA sequenzing data

Language: Python - Size: 2.21 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 6 - Forks: 0

sigven/pcgr

Personal Cancer Genome Reporter (PCGR)

Language: R - Size: 70.8 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 236 - Forks: 49

AlexandrovLab/SigProfilerClusters

Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.

Language: Python - Size: 1.72 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 9 - Forks: 0

jeongdo801/scNOVA

scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis

Language: R - Size: 56.6 MB - Last synced: 16 days ago - Pushed: 10 months ago - Stars: 9 - Forks: 3

murphycj/AGFusion

Python package to annotate and visualize gene fusions.

Language: Python - Size: 345 MB - Last synced: 17 days ago - Pushed: about 2 months ago - Stars: 54 - Forks: 25

BiomedSciAI/Geno4SD

An python omics data toolkit for the analysis across biological scales

Language: Jupyter Notebook - Size: 78.1 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 6 - Forks: 1

MuraliKrishna26/Prediction-of-High-Risk-Cancer-Patients

Classification of high risk and low risk cancer patients using Convolutional Neural Network and Mutli-Layer Perceptron.

Language: Jupyter Notebook - Size: 389 KB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

lukemccl/CancerExploration

Computational Biology Coursework centred around exploring cancer data for common genotypic and phenotypic trends

Language: Jupyter Notebook - Size: 2.08 MB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

joiningdata/lollipops

Lollipop-style mutation diagrams for annotating genetic variations.

Language: Go - Size: 2.49 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 177 - Forks: 71

bill071194/tcga-mlops

End-to-end machine learning pipeline for cancer classification using genomic data from TCGA's API endpoints. Model is deployed on SageMaker and invoked with AWS Lambda for serverless inference. Frontend was created using NextJS and deployed on Vercel.

Language: Jupyter Notebook - Size: 19.8 MB - Last synced: 3 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

paulashford/funvar-tracerx

Collated scripts for FunVar-TRACERx gene duplication, diversity and neofun.

Language: R - Size: 5.92 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

algo-cancer/DETOPT

DETOPT is a combinatorial optimization method for DETermining Optimal Placement in Tumor progression history of SNVs from the genomic regions impacted by CNAs using multi-sample bulk DNA sequencing data

Language: Python - Size: 8.63 MB - Last synced: 5 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

kevinhu/cancer_data

A unified downloader+preprocessor for cancer genomics datasets

Language: Python - Size: 669 KB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 14 - Forks: 6

fungenomics/HGG-oncohistones

Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

Language: HTML - Size: 16.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 5 - Forks: 1

dvav/clonosGP

A statistical approach for clonal deconvolution in cancer using longitudinal NGS data

Language: Jupyter Notebook - Size: 1.86 MB - Last synced: 15 days ago - Pushed: almost 4 years ago - Stars: 7 - Forks: 0

aritronath/ENDORSE

ENDORSE model

Language: R - Size: 66.4 KB - Last synced: 6 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

arsenij-ust/cbpManager

Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.

Language: Python - Size: 3.4 MB - Last synced: about 3 hours ago - Pushed: about 1 month ago - Stars: 6 - Forks: 1

odagayev/cbio_py

A Python client for the cbioPortal Cancer API.

Language: Python - Size: 162 KB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 1

cbg-ethz/myeloid-clustering

This repository contains supplementary information, data and code for the manuscript: Bayer et al. 2023, "Network-based clustering unveils interconnected landscapes of genomic and clinical features across myeloid malignancies"

Language: R - Size: 109 MB - Last synced: about 1 month ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

LamineTourelab/NetICS-multi-omics

NetICS: network-based integration of multi-omics data for prioritizing cancer genes

Language: MATLAB - Size: 12.8 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

seandavi/awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

Size: 27.3 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 284 - Forks: 65

xunchen85/VIcaller

A software to detect virome-wide integrations

Language: Perl - Size: 14.5 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 14 - Forks: 5

schmidt73/guidescan-web

A guideRNA design tool for the modern era.

Language: Clojure - Size: 2 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 7 - Forks: 2

KChen-lab/SiFit

Reconstructing phylogenetic tree from noisy mutation profile of single cells

Size: 24.7 MB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 2