GitHub topics: rna-seq-analysis
Colliton/Code-storage
"This repository contains Python scripts for biological data analysis, including Kaplan-Meier survival analysis, volcano plots for gene expression analysis, heatmaps for immune cell infiltration in murine models treated with Pyrvinium Pamoate, and SQL queries for data extraction and preprocessing."
Language: Jupyter Notebook - Size: 12.2 MB - Last synced at: about 12 hours ago - Pushed at: about 13 hours ago - Stars: 0 - Forks: 0
pmartR/pmartR
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Language: R - Size: 84.6 MB - Last synced at: about 3 hours ago - Pushed at: about 4 hours ago - Stars: 43 - Forks: 19
broadinstitute/single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Language: Ruby - Size: 42.3 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 68 - Forks: 27
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
Language: HTML - Size: 918 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 26 - Forks: 8
melody-create/Transcriptomic-Analysis
SLURM bash scripts to analyze RNA-seq data and R scripts to visualize RNA-seq data
Size: 0 Bytes - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Language: R - Size: 549 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 209 - Forks: 24
somayehsarirchi/Bioinformatics-Templates
Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)
Language: HTML - Size: 14.7 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 0 - Forks: 0
Ashley-Milton/MEU-SHA-histone-mods
Language: R - Size: 21.5 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
Language: Python - Size: 797 MB - Last synced at: 3 days ago - Pushed at: 13 days ago - Stars: 135 - Forks: 13
jeongahblairlee/rnaseqExplorer
Interactive tools for comprehensive RNA-seq analysis, from data analysis to in-depth visualizations
Language: R - Size: 8.28 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 1
DarwinianCoder/EDA_dashboard_GEO_dataset
Language: Jupyter Notebook - Size: 6.81 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0
giuliospinozzi/arpir
Automatic RNA-Seq Pipelines with Interactive Report
Language: R - Size: 202 MB - Last synced at: 16 days ago - Pushed at: 17 days ago - Stars: 25 - Forks: 11
supermaxiste/EnvironmentalStressPolyploidEvolution
This repository includes all the analyses related to the influence of environment in the early stages of evolution in the synthetic polyploid species Arabidopsis kamchatica
Language: R - Size: 420 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 1 - Forks: 0
WeeYeZhi/master_logbook_web_app
This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results
Language: Python - Size: 461 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
MaayanLab/Playbook-Workflow-Builder
A repository for the Playbook Workflow Builder project.
Language: TypeScript - Size: 21 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 19 - Forks: 18
insightsengineering/teal.modules.hermes
RNA-seq analysis modules to add to a teal application
Language: R - Size: 24 MB - Last synced at: 17 days ago - Pushed at: 19 days ago - Stars: 7 - Forks: 1
theislab/scarches
Reference mapping for single-cell genomics
Language: Jupyter Notebook - Size: 825 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 365 - Forks: 59
kalidouBA/DICEPRO
Semi-Supervise cellular deconvolution of Bulk RnaSeq using NMF and CiberSortx, DCQ or others
Language: R - Size: 42.2 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 2 - Forks: 0
CCICB/nf-carbonite
An RNA-Seq pipeline for Nextflow
Language: Nextflow - Size: 0 Bytes - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0
Ashley-Milton/OAN-epigenetic-profiling
Language: R - Size: 44.9 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0
vaishnavigoyal01/Differential-Gene-Expression-Yeast
A complete pipeline for RNA-Seq data analysis using command-line tools and R, including quality control, read trimming, alignment, read counting, and differential gene expression analysis.
Language: HTML - Size: 135 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
whl-usc/whl-usc.github.io
Crosslinking-based RNA Interactomes and Structuromes
Language: HTML - Size: 2.46 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
carpentries-incubator/bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
Language: R - Size: 52.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 22 - Forks: 40
SoniaRuiz/splicing-accuracy-manuscript
Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".
Language: R - Size: 1.77 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Language: R - Size: 121 MB - Last synced at: 25 days ago - Pushed at: about 1 month ago - Stars: 78 - Forks: 10
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
Language: R - Size: 1.2 GB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 125 - Forks: 36
bioinfodlsu/regulated-cell-death-playground
Collection of analysis scripts and notebooks related to regulated cell death
Language: HTML - Size: 91.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
jumphone/SPRINT
SNP-free RNA editing Identification Toolkit
Language: Python - Size: 10.8 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 47 - Forks: 19
gozsari/Single-Cell-Data-Analysis
Notes and studies about single-cell RNA-Seq analysis
Language: Python - Size: 9.45 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 8 - Forks: 4
federicomarini/ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Language: R - Size: 26.3 MB - Last synced at: 23 days ago - Pushed at: about 2 months ago - Stars: 29 - Forks: 7
federicomarini/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Language: R - Size: 60 MB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 56 - Forks: 17
DivyaRanjan16/OneStop-RNA-Analysis
A no-code RNA-Seq analysis web application
Language: Python - Size: 40 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
donalbonny/co-expression-analysis-WGCNA
Language: R - Size: 3.06 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 11 - Forks: 1
abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
Language: R - Size: 529 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0
allyssonallan/schizoplacenta
Code to handle RNA-seq analysis with placenta bulk data
Language: R - Size: 141 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
bixBeta/nextflow
nextflow RNAseq pipeline for GG02
Language: Nextflow - Size: 2.89 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 1
FeelLiao/rna-seq-std
RNA-Seq analysis workflow based on snakemake
Language: Python - Size: 7.54 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
BleekerLab/snakemake_rnaseq
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Language: Python - Size: 85.4 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 8
vgkavin/Deconvolution--BayesPrism
Deconvolution of bulk RNA seq data using annotated single cell RNA seq dataset as reference
Language: R - Size: 1000 Bytes - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
nf-core/lncpipe Fork of likelet/LncPipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Language: Nextflow - Size: 29.6 MB - Last synced at: 16 days ago - Pushed at: 2 months ago - Stars: 34 - Forks: 25
solida-core/ride
Language: Python - Size: 562 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 3
thom-99/GSE192860
differential gene expression analysis of Data from the study titled: 'Antipsychotic drug trifluoperazine as a potential therapeutic agent against nasopharyngeal carcinoma'
Language: Jupyter Notebook - Size: 3.21 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1
smangul1/rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
Language: Shell - Size: 358 MB - Last synced at: 30 days ago - Pushed at: about 1 year ago - Stars: 36 - Forks: 15
astamr/bayesReact
Model to evaluate the distribution of Regular Expressions (REs) across a ranked sequence list.
Language: HTML - Size: 1.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
rnabioco/aa-tRNA-seq-analysis-template
Quarto template for aa-tRNA-seq anaysis
Language: R - Size: 99.6 KB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
andreas-pattichis/ML-for-RNA-Seq-Disease-Classification-and-Biomarker-Discovery
This project develops a machine learning model to classify individuals as healthy, having rheumatoid arthritis (RA), or systemic lupus erythematosus (SLE) using RNA-Seq gene expression data. The project also identifies significant genes as potential biomarkers, leveraging SGDClassifier and XGBoost models.
Language: Jupyter Notebook - Size: 2.27 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
edemarest/rna-analysis-tool
This tool lets users upload RNA sequences for analysis. It supports both single and multiple sequence functions, providing clear visualizations and statistics.
Language: JavaScript - Size: 289 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
rnabioco/raer
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
Language: C - Size: 22.3 MB - Last synced at: 22 days ago - Pushed at: 3 months ago - Stars: 8 - Forks: 2
RuzhangZhao/mixhvg
The package mixhvg uses mixture of highly variable gene selection methods to improve gene selection.
Language: R - Size: 5.37 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 1
navduhan/pyseqrna
pySeqRNA: a python-based package for RNASeq data analysis
Language: Python - Size: 1.18 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 3
ishinder/EASTR
Emending Alignment of Spliced Transcript Reads
Language: Python - Size: 334 KB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 11 - Forks: 1
blengerich/Personalized_Regression
Personalized Regression
Language: Python - Size: 311 KB - Last synced at: 1 day ago - Pushed at: over 5 years ago - Stars: 16 - Forks: 2
uc-bd2k/GREIN
GREIN : GEO RNA-seq Experiments Interactive Navigator
Language: HTML - Size: 38.2 MB - Last synced at: about 1 month ago - Pushed at: about 6 years ago - Stars: 49 - Forks: 19
broadinstitute/single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
Language: HTML - Size: 128 MB - Last synced at: 24 days ago - Pushed at: over 1 year ago - Stars: 50 - Forks: 25
ScialdoneLab/CIARA_python
Implementation of entropy of mixing algorithm in python
Language: Jupyter Notebook - Size: 327 KB - Last synced at: 28 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 1
merlinis12/RNA-Seq-Data-Analysis-in-R
RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis
Language: HTML - Size: 4.05 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
imrobintomar/rna-seq-annotator
A robust Python tool for annotating RNA sequencing data using standardized ontologies and classification systems.
Language: Python - Size: 13.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
jlchen5/RNA-seq-Analysis
This repository contains RNA-seq analysis scripts.
Language: R - Size: 13.7 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
btmonier/vidger
Make rapid visualizations of RNA-seq data in R
Language: R - Size: 4.25 MB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 19 - Forks: 6
mmariani123/nextflow_workflow
Practicing Nextflow - Example RNA-Seq Nextflow workflow.
Language: HTML - Size: 16 MB - Last synced at: 3 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
lucahennet/RNAseqWorkflow
Detection of differentially expressed genes from bulk RNA-seq data
Language: Shell - Size: 12.7 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
jayelazuno/PhD_Thesis_Workbench
This repository to dedicated to notes, scripts, and general miscellaneous items I take during my PhD thesis in computational genetics, gene regulatory evolution
Language: HTML - Size: 2.03 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
mathilde733/RNA-seq
Project on RNA sequencing data
Language: HTML - Size: 7.41 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
junchaoshi/sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
Language: Perl - Size: 16.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 47 - Forks: 16
carpentries-incubator/FAIRification-of-RNAseq-Data
FAIRification of RNAseq Data
Size: 6.83 MB - Last synced at: about 21 hours ago - Pushed at: about 23 hours ago - Stars: 0 - Forks: 0
eleni-chr/Analysis-of-small-ncRNA-seq
This repository contains code files and instructions for processing, analysing, and quantifying small non-coding RNAs from short-read RNA-seq data. It includes steps for trimming, alignment, and quantification of miRNAs, tRFs, piRNAs, and other ncRNAs.
Language: MATLAB - Size: 50.8 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
jyyulab/NetBID
Data-driven Network-based Bayesian Inference of Drivers
Language: R - Size: 360 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 40 - Forks: 9
aaranieselvan/ABCC_grp10
KCL MSc Applied Bioinformatics : Module Applied Bioinformatics & Cloud Computing Project
Size: 1.56 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
dzhang32/dasper
Detecting Aberrant Splicing Events from RNA-sequencing data
Language: R - Size: 34.6 MB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 16 - Forks: 3
pfrsch/EBAC-workshop
Ciência de Dados na Saúde: Construir um modelo para predizer quando uma pessoa tem câncer dado um exame de sequenciamento do RNA
Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
naoto-hikawa/RNAseq_tutorial
Tutorial for RNA sequence data processing and simple downstream analysis with Drosophila melanogaster
Language: Python - Size: 83.7 MB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
boulardlab/3t-seq
A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
Language: Python - Size: 28.4 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 5 - Forks: 1
utdal/Bulk-RNA-Seq-Nextflow-Pipeline
This is an automated workflow pipeline for analyzing and processing Bulk-RNA seq data, implemented primarily in bash, python and R, and wrapped in a NextFlow workflow to characterize the gene landscape in the samples.
Language: Nextflow - Size: 4.24 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
Arnaroo/INDEGRA
Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons
Language: Python - Size: 158 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 0
nunofonseca/irap
integrated RNA-seq Analysis Pipeline
Language: R - Size: 2.13 GB - Last synced at: 6 months ago - Pushed at: over 6 years ago - Stars: 83 - Forks: 34
Moha-cm/RNAseq-Analysis
Bulk Rna-seq Analysis
Language: HTML - Size: 4.41 MB - Last synced at: 4 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
fomightez/simulated_data
A repository for code that generates various simulated data.
Language: Python - Size: 1.02 MB - Last synced at: 29 days ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core
Language: Nextflow - Size: 20.9 MB - Last synced at: 28 days ago - Pushed at: 5 months ago - Stars: 25 - Forks: 38
galantelab/fredy
Tool to identify chimeric events from RNA-Seq data
Language: Shell - Size: 23.4 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 4 - Forks: 0
l0andr/pathways-dotplot
A Python library and command-line tool for creating dot-plots for pathways and enrichment analysis.
Language: Python - Size: 24.4 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1
sarahtanja/coral-embryo-leachate
A single stressor experiment testing the embryonic development of Montipora capitata corals when exposed to PVC leachate.
Language: HTML - Size: 315 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
raphaelrubrice/TELLAM
Pipeline for Transposable Elements Locus Level Analysis.
Language: Python - Size: 2.35 MB - Last synced at: 8 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
lisabensoussan/DNA_lab
This project provides hands-on experience in DNA analysis using R, covering sequence manipulation, mutation analysis, GC content, fragment analysis, sequence alignment, RNA-seq, variant analysis, and phylogenetics.
Language: HTML - Size: 6.51 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
groverkaushal/RNAseq-Workflow-Mapping-Assembly-and-Differential-Gene-Expression-Analysis
This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.
Language: Shell - Size: 122 KB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1
iamandreatonina/Laboratory_Biological_Data_Mining
Laboratory of biological Data Mining :computer:
Language: HTML - Size: 219 MB - Last synced at: 13 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1
sunyumail93/PipeRNAseq
A comprehensive pipeline for RNAseq data analysis
Language: Shell - Size: 107 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 22 - Forks: 2
sunyumail93/easyRNAseqDE
An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.
Language: R - Size: 55.5 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 4 - Forks: 0
SysBioChalmers/KMG060-Systems-Biology-course
KMG060 Systems Biology course - repo for students
Language: MATLAB - Size: 25.9 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 7
Center-for-Health-Data-Science/bulkDGD
Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.
Language: Python - Size: 92.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 10 - Forks: 4
xjyx/deepEIci
Leveraging deep learning for EIciRNA prediction
Language: Python - Size: 10.7 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
pachterlab/biophysics
Repository for Pachter Lab Biophysics
Language: Python - Size: 15.8 MB - Last synced at: 9 months ago - Pushed at: 11 months ago - Stars: 6 - Forks: 0
MaayanLab/Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Language: Jupyter Notebook - Size: 4.91 MB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 102 - Forks: 61
kevincjnixon/BinfTools
Useful R functions for Multi-omics analyses
Language: R - Size: 5.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 2
OluwadareLab/CNNSplice
CNNSplice: Robust Models for Splice Site Prediction Using Deep Convolutional Neural Networks
Language: Python - Size: 390 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
nellore/rail
Scalable RNA-seq analysis
Language: Python - Size: 249 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 73 - Forks: 11
csgroen/deconverse
Bulk RNA-seq deconvolution and benchmarking using single-cell reference profiles
Language: R - Size: 581 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
chrisarg/bio-seqalignment-components-seqmapping
Components for sequence mapping under the Bio::SeqAlignment namespace
Language: Perl - Size: 82 KB - Last synced at: 4 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tools4plant-omics/PABLOG
PABLOG: a Primer Analysis tool using a Bee-Like approach on Orthologous Genes
Language: Python - Size: 190 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 2 - Forks: 1
nasqar/deseq2shiny
a web-based R shiny application that wraps DESeq2 R package
Language: R - Size: 2.27 MB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 15 - Forks: 7
JuanCarlosBio/RNA-Seq_VIU
Actividades de la asignatura de Análisis de transcriptómicos de la expresión génica
Language: Python - Size: 35.8 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
