fgcz/prolfqua

Differential Expression Analysis tool box R lang package for omics data

Language: R - Size: 760 MB - Last synced: about 17 hours ago - Pushed: 1 day ago - Stars: 36 - Forks: 6

jawa23bio/RNA-Seq

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

Language: HTML - Size: 985 KB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 1 - Forks: 0

swiri021/NWPV2

Method of Combined P-value to identify Differential Expressed Gene in dataset

Language: Python - Size: 10.7 KB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

swiri021/Difference_test_with_permutation

Difference test with Gene expression by permutation method( by T-test and median test)

Language: Python - Size: 16.6 KB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

KatrionaGoldmann/volcano3D

An R package to plot interactive three-way differential expression analysis

Language: HTML - Size: 219 MB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 31 - Forks: 7

OpenOmics/modr

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

Language: Python - Size: 689 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 5 - Forks: 1

epigen/dea_limma

A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

Language: R - Size: 76.2 KB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 9 - Forks: 0

euxhenh/grinch

A library for differential expression and gene set enrichment analysis based on hydra and pydantic.

Language: Python - Size: 318 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 0

epigen/dea_seurat

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

Language: R - Size: 376 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 6 - Forks: 3

xinhe-lab/GSFA

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

Language: C++ - Size: 1.32 MB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 12 - Forks: 1

ATA82/MotifSearcher

Here, we describe and provide an RNA-Seq analysis of a RIP assay to understand the mechanism of AML del(9q) progression. (Ali T. Abdallah)

Language: R - Size: 2.92 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

pentalpha/r-peridot

Software for intuitively doing Differential Gene Expression (DGE) analysis on Windows and GNU\Linux, based on R packages.

Language: Java - Size: 18.9 MB - Last synced: 10 days ago - Pushed: over 4 years ago - Stars: 4 - Forks: 0

abarrenos/EasyDEA

EasyDEA: An Automated Tool for Differential Expression Analysis

Language: R - Size: 2.04 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

bharathananth/compareRhythms

Approaches to identify Differential Rhythmicity

Language: TeX - Size: 7.72 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 4 - Forks: 4

programerkotik/Differential-Gene-Expression-Analysis

Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.

Language: R - Size: 161 KB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

MendenLab/miRNAInt_Ferroptosis

Multi-omics differential expression and integration using PPI networks

Language: R - Size: 2.79 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

paulynamagana/Gene_Analysis

Analysis of data from GEO

Language: R - Size: 111 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

kirushka/Tat_in_B_cells

Differential gene expression and gene enrichment analyses of B-cell line with ectopic expression of HIV-1 Tat protein

Language: R - Size: 72.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

upendrabhattarai/denovo-RNA-Seq-On-Nesi

This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.

Size: 39.1 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

jungsoh/transcriptomics-course

Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining

Language: HTML - Size: 20.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

shehio/Computational-Biology

Language: Jupyter Notebook - Size: 21.6 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 5 - Forks: 1

yotammarton/bioinformatics_course

GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder

Language: HTML - Size: 110 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

EliasFarr/SPOT

SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles

Language: R - Size: 19.1 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 2

animesh/diffExpr Fork of timoschd/geocoding_shiny

R Shiny app for differential-expression analysis using T-test. The app is automatically deployed via GH Actions to shinyapp.io available as https://fuzzylife.shinyapps.io/diffExpr/

Language: R - Size: 710 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

insilicolife/micti

MICTI- Marker gene Identification for Cell Type Identity

Language: Jupyter Notebook - Size: 14.9 MB - Last synced: 10 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0