RDA-MOMSI/Dashboard

MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard

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moonblume/GATv2-MultiOmics

Leveraging advanced graph neural networks to enhance the classification of bladder cancer subtypes by integrating multi-omics data

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Multiomics-Analytics-Group/acore

Functionality to preprocess and analyse multi-omics data

Language: Python - Size: 3.51 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

cafferychen777/MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Language: R - Size: 104 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 42 - Forks: 6

opencobra/cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

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MetExplore/dexom-python

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

Language: Python - Size: 1.97 MB - Last synced at: 23 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

futianfan/GenoCraft

GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)

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qwerty239qwe/pipeGEM

This is a package for visualizing and analyzing multiple metabolic models. It also allow users to integrate omic data, metabolic tasks, and medium data with genome-scale metabolic models (GEMs).

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cafferychen777/MicrobiomeStat-Turtorial-Professional-Version

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

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ladyson1806/SerohijosLab-piQTL

GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

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nara3m/nara3m

Nara Marella

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MetExplore/dexom

Diversity-based enumeration of optimal context-specific metabolic networks

Language: MATLAB - Size: 2.32 MB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 1

krassowski/multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

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shashank-KU/OmniCorr

Calculate correlation between two omics data

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sriram-lab/emt-cobra

Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

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pcastellanoescuder/POMA

:package: Omics Data Analysis Tools

Language: R - Size: 40.7 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 11 - Forks: 5

lozuponelab/AMON

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

Language: Python - Size: 105 KB - Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 21 - Forks: 11

selbouhaddani/PO2PLS

Probabilistic O2PLS

Language: R - Size: 3.03 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 3

ferdinand-popp/Deepan

Cluster patient based on their multiomics data utilizing graph autoencoders

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ocbe-uio/BayesSurvive

Bayesian survival models for high-dimensional data

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babessell1/MADRID Fork of HelikarLab/COMO

Metabolic Drug Repurposing Pipeline

Language: Python - Size: 733 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0

BioSystemsUM/MEWpy

Metabolic Engineering Workbench

Language: Python - Size: 28.6 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 34 - Forks: 11

crhisto/DecoFlex

DecoFlex deconvolution method for Omic data implemented as DecoFlexR

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SysBioChalmers/Yarrowia_lipolytica_W29-GEM

Genome-scale model of Yarrowia lipolytica.

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ngiangre/ROMOPOmics Fork of AndrewC160/ROMOPOmics

R package to parse datasets into SQLite-friendly tables

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saifeldeen-bio/MultiOmics

MOFA (Multi-Omics Factor Analysis) is a computational framework and statistical method designed for the integration and analysis of multi-omics data.

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sriram-lab/metabolicmodeling

Constraint-based metabolic modeling software from the Chandrasekaran Lab

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NhanNguyen000/RegOmics

This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.

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annkamsk/mvae

Multimodal Variational Autoencoder dedicated to omics data integration

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BigDataInSilicoBiologyGroup/IgemRNA

IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.

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MendenLab/miRNAInt_Ferroptosis

Multi-omics differential expression and integration using PPI networks

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ScottCampit/single-cell-neutrophil-flux-analysis Fork of sriram-lab/single-cell-neutrophil-flux-analysis

Analysis of neutrophil metabolic activity during metastasis using single-cell RNASeq and COnstraint-Based Reconstruction and Analysis.

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ikmb/OmLiT

A Rust accelerated library for annotation and preparing multi-omics data for training deep learning models

Language: Rust - Size: 6.66 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

fanzhanglab/amp_phase1_ra

Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.

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mbongaerts/Reafect

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systems-genomics-lab-auc/systems-genomics-lab.github.io

data analytics & machine learning meet genetics @ AUC

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gpalou4/TFM

"DNA methylation and gene expression integration in cardiovascular disease"

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krassowski/meningitis-integration

Discovering biomarkers for meningitis by multivariate integration of multi-omics and clinical data

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