SysBioChalmers/RAVEN

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Language: MATLAB - Size: 1010 MB - Last synced: about 3 hours ago - Pushed: about 11 hours ago - Stars: 97 - Forks: 52

opencobra/cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Language: MATLAB - Size: 1.02 GB - Last synced: about 5 hours ago - Pushed: about 5 hours ago - Stars: 237 - Forks: 302

MetaSys-LISBP/PhysioFit

Estimation of extracellular fluxes and growth rate

Language: Python - Size: 3.62 MB - Last synced: about 5 hours ago - Pushed: about 6 hours ago - Stars: 6 - Forks: 4

SysBioChalmers/yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

Language: MATLAB - Size: 67.4 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 87 - Forks: 43

micom-dev/q2-micom

A Qiime plugin for MICOM.

Language: Python - Size: 65.3 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 10 - Forks: 3

jotech/gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

Language: R - Size: 396 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 139 - Forks: 28

cnapy-org/CNApy-projects

:world_map: A repository of CNApy projects

Language: Tcl - Size: 5.95 MB - Last synced: 6 days ago - Pushed: 7 days ago - Stars: 6 - Forks: 1

cdanielmachado/smetana

SMETANA: a tool to analyse interactions in microbial communities

Language: Python - Size: 183 KB - Last synced: 8 days ago - Pushed: almost 4 years ago - Stars: 53 - Forks: 11

resendislab/corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

Language: Python - Size: 1.6 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 21 - Forks: 8

micom-dev/micom

Python package to study microbial communities using metabolic modeling.

Language: Python - Size: 39.3 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 77 - Forks: 17

mauriceling/advancesyntoolkit

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

Language: Python - Size: 15.3 MB - Last synced: 12 days ago - Pushed: over 2 years ago - Stars: 12 - Forks: 34

klamt-lab/autopacmen

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

Language: HTML - Size: 17.2 MB - Last synced: 20 days ago - Pushed: 10 months ago - Stars: 11 - Forks: 7

opencobra/memote

memote – the genome-scale metabolic model test suite

Language: HTML - Size: 12.1 MB - Last synced: 13 days ago - Pushed: 4 months ago - Stars: 122 - Forks: 26

opencobra/cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

Language: Python - Size: 60.6 MB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 442 - Forks: 212

zhanglab/GEM-iWP3

Metabolic model of the Shewanella piezotolerans WP3

Size: 57.6 KB - Last synced: about 1 month ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1

marouenbg/PhD-thesis

Latex code base of my doctoral disseration.

Language: TeX - Size: 20.2 MB - Last synced: about 2 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

MolecularBioinformatics/thermophilesNAD

Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.

Language: Jupyter Notebook - Size: 9.09 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

rcolpo/pgp_reconstruction

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

Language: Python - Size: 4.76 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 11 - Forks: 0

AberystwythSystemsBiology/dimedbpy

Python wrapper for the DIMEdb REST API.

Language: Python - Size: 43.9 KB - Last synced: 12 days ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 0

AuReMe/metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

Language: Jupyter Notebook - Size: 36.3 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 44 - Forks: 5

univieCUBE/ScyNet

ScyNet: Visualisation of community metabolic models in Cytoscape

Language: Java - Size: 6.07 MB - Last synced: 21 days ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

findCP/findCPcore

findCP core package - find ChokePoint reactions in genome-scale metabolic models

Language: HTML - Size: 8.97 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

Micromeda/pygenprop

A python library for programmatic usage of EBI InterPro Genome Properties.

Language: Python - Size: 4.52 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 9 - Forks: 4

cnapy-org/CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

Language: Python - Size: 6.92 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 39 - Forks: 7

franciscozorrilla/metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Language: Python - Size: 262 MB - Last synced: 2 months ago - Pushed: 4 months ago - Stars: 160 - Forks: 34

CABSEL/DeltaFBA

DeltaFBA is a set of MATLAB functions that employs constraint-based modeling, in combination with differential gene expression data, to evaluate changes in the intracellular flux distribution between two conditions.

Language: MATLAB - Size: 894 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

SysBioChalmers/ecFactory

A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism

Language: MATLAB - Size: 359 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 2

modsim/FluxML

A Universal Modeling Language for Metabolic Flux Analysis

Language: C++ - Size: 1.98 MB - Last synced: 11 days ago - Pushed: about 2 months ago - Stars: 9 - Forks: 6

SBRG/cobrame

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Language: Python - Size: 1.61 MB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 32 - Forks: 18

korem-lab/pymgpipe

Python implementation of mgpipe

Language: JetBrains MPS - Size: 13.8 MB - Last synced: 19 days ago - Pushed: 7 months ago - Stars: 6 - Forks: 0

Waschina/cobrar

COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R

Language: R - Size: 794 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

PiotrTymoszuk/collagen_pca

Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma

Language: R - Size: 144 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

tubanlee/MM

Infer metabolic directions from moment differences of mass-weighted intensity distributions

Language: R - Size: 4.17 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 186 - Forks: 14

sirno/misosoup

Minimal Supplying Community Search with constraint-based optimization methods.

Language: Python - Size: 1.1 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 12 - Forks: 0

Gibbons-Lab/isb_course_2023

Materials and presentation for the 2023 ISB Microbiome course.

Language: Jupyter Notebook - Size: 245 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 15 - Forks: 7

llvdrhau/Alquimia_Biorefinery_design_and_optimisation

Alquimia: Pioneering Biorefinery Design and Optimization with Integrated Metabolic Models in Superstructure Optimization Framework

Language: Python - Size: 75.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

GRONINGEN-MICROBIOME-CENTRE/MicrobeRX

MicrobeRX

Language: Python - Size: 152 MB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 7 - Forks: 0

zhanglab/psamm

Curation and analysis of metabolic models

Language: Python - Size: 104 MB - Last synced: 4 days ago - Pushed: 9 months ago - Stars: 34 - Forks: 14

cfrioux/fluto

Language: Python - Size: 308 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

Gibbons-Lab/isb_course_2022

Materials and presentation for the 2022 ISB Microbiome course.

Language: Jupyter Notebook - Size: 258 MB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 23 - Forks: 8

openCONTRABASS/CONTRABASS

Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es

Language: HTML - Size: 5.61 MB - Last synced: 13 days ago - Pushed: 7 months ago - Stars: 3 - Forks: 0

Matteopaluh/KEMET

KEGG Module Evaluation Tool

Language: Python - Size: 178 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 15 - Forks: 5

Waschina/Eutropia

Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space

Language: R - Size: 20.7 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

Kivazque/SYSBIO

SYSBIO repository of ENG4BIO group within Universitat Autònoma de Barcelona (UAB) mainly regarding K. phaffi modelling.

Size: 11.7 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

pwendering/model-prm

Constraint-based modeling of photorespiratory mutants using metabolomics in TMFA

Language: MATLAB - Size: 204 MB - Last synced: 3 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

COBREXA/AbstractFBCModels.jl

General interface for flux-based constrained metabolic models

Language: Julia - Size: 337 KB - Last synced: 20 days ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

MetabolicAtlas/MetabolicAtlas

Open source genome-scale metabolic models of human and model animals

Language: Vue - Size: 66 MB - Last synced: 6 months ago - Pushed: 10 months ago - Stars: 18 - Forks: 2

klamt-lab/astheriscPackage

Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

Language: MATLAB - Size: 7.24 MB - Last synced: 6 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

gibbslab/exp2flux

An R package to incorporate in a continuous way the gene-expression data as FBA flux boundaries in a metabolic model. Also, functions to calculate and plot the differences between model fluxes in different metabolic scenarios was included. This is an implementation of the algorithm described by Lee et al. (2012) in DOI: 10.1186/1752-0509-6-73.

Language: R - Size: 1.19 MB - Last synced: 6 months ago - Pushed: almost 7 years ago - Stars: 2 - Forks: 0

cdiener/proliferation

Project to study proliferation and metabolic liabilities across several thousand cancer samples.

Language: R - Size: 29.2 MB - Last synced: 6 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 3

ThierryMondeel/FOSBE_2016

"Maps for when the living gets tough: Maneuvering through a hostile energy landscape" | Mondeel, Thierry D.G.A. Rehman, Samrina Zhang, Yanfei Verma, Malkhey Dürre, Peter Barberis, Matteo Westerhoff, Hans V. | 2016 | IFAC-PapersOnLine |

Language: HTML - Size: 1.83 MB - Last synced: 6 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1

CaileanCarter/tuatara

Reconstruct and handle many genome-scale metabolic models in ScrumPy

Language: Python - Size: 822 KB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 6 - Forks: 0

CaileanCarter/ScrumPy-Notebook

Learn metabolic modelling and using ScrumPy for modelling.

Language: HTML - Size: 1.52 MB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

svijayakumar32/multi-objective-optimization-of-gut-community-metabolic-model

Source code and information for journal article Social dynamics and modeling of chrono-nutrition

Language: MATLAB - Size: 17.2 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

jclachance/BOFdat

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

Language: Jupyter Notebook - Size: 15.5 MB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 26 - Forks: 4

OSS-Lab/FBAhv

FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)

Language: Python - Size: 32.2 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

YosefLab/compassR

An R library for conducting analyses on COMPASS data.

Language: R - Size: 50.2 MB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 9 - Forks: 9

carrascomj/mmodes

MMODES (Metabolic Models based Ordinary Differential Equations Simulation)

Language: Python - Size: 761 KB - Last synced: 1 day ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

pwendering/RENZO_paper

Impose constraints on enzyme abundances ratios in enzyme-constraint metabolic models

Language: MATLAB - Size: 1.71 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

SysBioChalmers/Yarrowia_lipolytica_W29-GEM

Genome-scale model of Yarrowia lipolytica.

Language: MATLAB - Size: 3.61 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 7 - Forks: 7

juanvillada/iJV803

iJV803: a genome-scale metabolic model for Methylomicrobium album BG8

Size: 8.54 MB - Last synced: 9 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

LMSE/kbistable

Code for Model-based Design of Bistable Cell Factories for Metabolic Engineering

Language: Matlab - Size: 93.3 MB - Last synced: 9 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

LMSE/emilio Fork of shyamsrinivasan/emilio

Source code for EMILiO: A fast algorithm for genome-scale strain design.

Language: MATLAB - Size: 1.63 MB - Last synced: 9 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

MetaSys-LISBP/pseudomonas_metabolic_burden

Flux response of Pseudomonas putida to increased levels of metabolic burden

Language: R - Size: 1.6 MB - Last synced: 12 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

htpusa/moomin.jl

From differential gene expression to metabolic changes

Language: Julia - Size: 119 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

gibbslab/minval

An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.

Language: R - Size: 7.1 MB - Last synced: 6 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

marouenbg/VFFVA

Dynamically load balanced FVA through a hybrid MPI/OpenMP architecture.

Language: MATLAB - Size: 181 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 4 - Forks: 1

BigDataInSilicoBiologyGroup/IgemRNA

IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.

Language: MATLAB - Size: 16.2 MB - Last synced: 6 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

opencobra/COBRA.tutorials

Repository of tutorials for The COBRA Toolbox

Language: MATLAB - Size: 298 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 18 - Forks: 45

pwendering/PRESTO

PRESTO: Correction of turnover numbers in enzyme-constraint metabolic models

Language: MATLAB - Size: 92.2 MB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

pwendering/COMMIT

COMMIT: Community-dependent gap-filling considering metabolite leakage

Language: MATLAB - Size: 1.78 GB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 2

MetaSys-LISBP/IsoSim Fork of pierremillard/KIEs

IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems

Language: R - Size: 221 KB - Last synced: 12 days ago - Pushed: over 4 years ago - Stars: 6 - Forks: 3

VirtualMetabolicHuman/AGORA

The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.

Size: 679 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 17 - Forks: 7

CompBtBs/FalseDiscoveriesAnalysis

Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

Language: Jupyter Notebook - Size: 24.1 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

MetaSys-LISBP/acetate_regulation

Kinetic modeling of glucose and acetate metabolisms in E. coli

Language: Component Pascal - Size: 21.6 MB - Last synced: 12 days ago - Pushed: about 3 years ago - Stars: 5 - Forks: 2

cnapy-org/CNApy-guide

📕 CNApy Guide

Language: HTML - Size: 8.74 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

sriram-lab/egem

epigenome scale metabolic modeling for cancer metabolism

Language: MATLAB - Size: 478 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 3 - Forks: 2

findCP/findCPcli

findCP CLI package - find ChokePoint reactions in genome-scale metabolic models

Language: Python - Size: 5.6 MB - Last synced: 10 days ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

SysBioChalmers/KMG060-Systems-Biology-course

KMG060 Systems Biology course - repo for students

Language: MATLAB - Size: 22.9 MB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 6

SysBioChalmers/YeastsModels

Container of computational models of metabolism for different yeast species.

Language: HTML - Size: 13 MB - Last synced: 11 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

BeeAnka/EFMlrs

Python package and workflow for EFM calculation via (mp)lrs and efmtool

Language: Python - Size: 5.37 MB - Last synced: 20 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

micom-dev/media

Environmental growth media for MICOM.

Language: Jupyter Notebook - Size: 4.67 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 5 - Forks: 1

m-jahn/fluctuator

R package to Import and Modify SVG (XML) Graphic Files

Language: R - Size: 3.31 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 13 - Forks: 2

jcapels/jupyterhub_metabolic_modelling

A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.

Language: Shell - Size: 26.4 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

klamt-lab/CommModelPy

Create stoichiometric metabolic network models of single-species or multi-species communities

Language: Python - Size: 6.54 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago - Stars: 3 - Forks: 0

sriram-lab/MetOncoFit

Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

Language: HTML - Size: 358 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 6

NYXFLOWER/MeMo

Constraint-based metabolic modelling with sparse IPOPT

Language: Python - Size: 34.2 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ChristianLieven/memote-m-capsulatus

Genome-scale metabolic model of Methylococcus capsulatus.

Language: HTML - Size: 14 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 7 - Forks: 2

earmingol/cobra_utils

Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.

Language: Jupyter Notebook - Size: 1.66 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

shyamsrinivasan/ident

Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.

Language: Jupyter Notebook - Size: 281 MB - Last synced: 11 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 2

sriram-lab/dfa

Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.

Language: MATLAB - Size: 5.73 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

jseidel5/Python-Probabilistic-Regulation-of-Metabolism

Python Implementation of PROM

Language: MATLAB - Size: 35 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 0 - Forks: 0

m-jahn/cell-economy-model-legacy

Cellular economy models based on global optimization using GAMS

Language: GAMS - Size: 234 KB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

alexOarga/findCritical

A desktop app, web app and CLI to operate and find vulnerabilities in SBML metabolic networks.

Language: Python - Size: 6.25 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

dbkgroup/reaction-balancer

Chemical reaction balancing web service

Language: Python - Size: 45.9 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 2 - Forks: 0

MetaNetX/MNXref

MNXref: Reconciliation of metabolites and biochemical reactions for metabolic networks

Size: 0 Bytes - Last synced: 6 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

VirtualMetabolicHuman/Recon

The aim of this repository is to assist in further improving and expanding the genome-scale human metabolic reconstruction through the use of issues. Please note that pull requests will be automatically closed.

Size: 4.45 MB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 2

resendislab/cobrame-docker

Docker image for a full ME model stack.

Language: Jupyter Notebook - Size: 8.53 MB - Last synced: 12 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

eltonlaw/metabolitepo

Searches through every possible set of chemical reaction, enzyme pairs to create metabolite pathways from the input chemical to the output chemical. Used to find the optimal DNA sequences to add to a cell for a given input chemical, output chemical and cell.

Language: Python - Size: 17.6 KB - Last synced: about 1 year ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0