Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: gut-microbiome
erictleung/microbiome-analysis-resources
:microscope: Resources and notes on studying the human microbiome
Size: 17.6 KB - Last synced: 15 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0
jajohnso29/jajohnso29
My professional repository of project and publication data files in computational biology and data science.
Size: 41 KB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0
Shuyib/mouse_gut_OTU
Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.
Language: Jupyter Notebook - Size: 91.8 KB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1
iliapopov17/PNMIM
Repository for reports and data of bioinformatics analyses from internship in Indonesia
Language: HTML - Size: 7.17 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Language: Python - Size: 262 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 160 - Forks: 34
GRONINGEN-MICROBIOME-CENTRE/MicrobeRX
MicrobeRX
Language: Python - Size: 152 MB - Last synced: 14 days ago - Pushed: 4 months ago - Stars: 7 - Forks: 0
GeorgeMcLellan/SCD-Food-List-Android
An Android app to help people on the Specific Carbohydrate Diet (SCD) check if a food is allowed or not on the diet. This app is endorsed by Kirkton Press Limited, owner of the SCD trademark.
Language: Kotlin - Size: 7.14 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0
Wishartlab-openscience/Biotransformer
A computational tool for the prediction and identification of metabolites.
Language: Java - Size: 69.2 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 1
hghezzi/biof501_HG_term_project
Snakemake workflow to calculate in vivo bacterial replication rates from single time point metagenomics sequencing
Size: 2.63 MB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1
gntoulaveris/bioenergetic-pathways-human-gut
Analysis and visualization of bioenergetic pathways in human gut microbiome datasets.
Language: R - Size: 258 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
microsud/Indian-gut-microbiota
Data and analysis code for the Indian gut microbiota study
Language: R - Size: 483 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 4 - Forks: 0
gaospecial/gut-microbiome-20yrs
Gut microbiome study (from 2000 to 2020)
Language: HTML - Size: 68.9 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
PulmonomicsLab/mdpd
MDPD - Microbiome Database of Pulmonary Diseases
Language: PHP - Size: 9.19 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
val92loz/HFD-NR_microbiome
This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.
Language: Python - Size: 215 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
jaeyunsung/GMHI_2020
Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
Language: R - Size: 3.6 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 19 - Forks: 15
brenoslivio/GutMicrobiomeAnalysis
Analysis and machine learning of high-dimensional data from the human gut microbiome.
Language: Jupyter Notebook - Size: 24.2 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1
