GitHub topics: genome-scale-metabolic-model
zimmmermann-kogadeeva-group/GEMsembler
GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)
Language: Python - Size: 5.89 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 4 - Forks: 0
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Language: Python - Size: 262 MB - Last synced at: 23 days ago - Pushed at: 9 months ago - Stars: 231 - Forks: 47
mdziurzynski/iUmbe1-GEM
Genome-scale metabolic model of Umbelopsis sp. WA50703
Language: HTML - Size: 2.47 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
franciscozorrilla/EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
Language: R - Size: 414 KB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 2
nmendozam/masterThesis
Computational modeling of a human astrocyte with multi-omic data
Language: MATLAB - Size: 35 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
mahjalili/ssGSEAGEM
Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models.
Language: R - Size: 19.3 MB - Last synced at: 5 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
Polster-lab/humanGEM_topology
Connectivity between molecular components and metabolic subsystems in humanGEM
Language: MATLAB - Size: 1.57 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
franciscozorrilla/EMBOMicroCom2
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024
Language: HTML - Size: 17.2 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0
LiLabTsinghua/Yeast-MetaTwin
The metabolic twin model of yeast
Language: Jupyter Notebook - Size: 238 MB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1
gioodm/WASP
Python command-line software for whole-proteomes annotation based on structural homology.
Language: Python - Size: 19.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
rcolpo/pgp_reconstruction
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
Language: Python - Size: 4.76 MB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 1
Robaina/Phycogem
Modeling phycospheric metabolic interactions in python
Language: Python - Size: 48 MB - Last synced at: 10 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
draeger-lab/C_striatum_GEMs
This repository contains all changes made to the strain specific models of Corynebacterium striatum.
Language: HTML - Size: 68.9 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
c-mayer/ECMproject
ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.
Language: Jupyter Notebook - Size: 4.68 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Matteopaluh/KEMET
KEGG Module Evaluation Tool
Language: Python - Size: 178 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 22 - Forks: 5
