GitHub topics: metabolic-modeling
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Language: Python - Size: 262 MB - Last synced at: 15 days ago - Pushed at: 9 months ago - Stars: 231 - Forks: 47
AmmarRashed/Genobolitics
A bioinformatics tool that integrates gene expression data with metabolic models for pathway-level disease analysis. Extends Metabolitics for more comprehensive systems biology analysis.
Language: Jupyter Notebook - Size: 558 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 1 - Forks: 1
earmingol/scCellFie
scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.
Language: Python - Size: 7.89 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 7 - Forks: 0
rcolpo/pgp_reconstruction
Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
Language: Python - Size: 4.76 MB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 1
franciscozorrilla/systems-biology-fba-practical Fork of arianccbasile/Systems-Biology-practical2022
University of Cambridge Part III Systems Biology course, practical exercises for learning flux balance analysis
Language: HTML - Size: 6.61 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0