Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: metagenome-assembled-genomes
Serka-M/mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Language: Python - Size: 2.66 MB - Last synced: about 15 hours ago - Pushed: about 17 hours ago - Stars: 33 - Forks: 3
Serka-M/mmlong2-lite
Lightweight bioinformatics pipeline for microbial genome recovery
Language: Python - Size: 1.18 MB - Last synced: about 22 hours ago - Pushed: 2 days ago - Stars: 5 - Forks: 3
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Language: Python - Size: 262 MB - Last synced: 3 days ago - Pushed: 5 months ago - Stars: 175 - Forks: 37
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Language: Python - Size: 61.3 MB - Last synced: 3 days ago - Pushed: 22 days ago - Stars: 405 - Forks: 43
WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Language: Python - Size: 4.81 MB - Last synced: 7 days ago - Pushed: 5 months ago - Stars: 238 - Forks: 49
rajaldebnath/Code-documentation
Project code documentation
Language: Jupyter Notebook - Size: 559 KB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 0 - Forks: 0
cumbof/MetaSBT-DBs
MetaSBT public databases
Size: 1.13 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
cumbof/MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Language: Python - Size: 812 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 3
marbl/binnacle
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
Language: Python - Size: 3.26 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 9 - Forks: 2
ayixon/RaPDTool
Rapid Profiling and Deconvolution Tool for Metagenomes
Language: Python - Size: 7.98 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 111 - Forks: 87
hildebra/clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
Language: C++ - Size: 3.39 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0
tli14/PanMAGs
Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness
Language: R - Size: 1.59 MB - Last synced: over 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
ohmeta/oral-assembly
Human oral metagenome-assembly-genome
Language: Jupyter Notebook - Size: 3.28 MB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0
