GitHub topics: metagenome-assembled-genomes
WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Language: Python - Size: 14.7 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 288 - Forks: 55
cumbof/MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Language: Python - Size: 802 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 9 - Forks: 3
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Language: Python - Size: 99.4 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 532 - Forks: 62
ohmeta/MAGIC
The Metagenome-Assembled Genome Inventory for Children (MAGIC)
Size: 49.8 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 3 - Forks: 0
franciscozorrilla/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Language: Python - Size: 262 MB - Last synced at: 28 days ago - Pushed at: 12 months ago - Stars: 241 - Forks: 46
mdelacuba/script-repo-microbiome-2025
Script repository related to the data processing and analyses of the study: "Cold adaptation and horizontal gene transfer shape Antarctic sponge microbiomes".
Language: Shell - Size: 63.5 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
cumbof/MetaSBT-DBs
MetaSBT public databases
Size: 7.94 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
fischuu/Pipeline-Holoruminant-Meta
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators
Language: HTML - Size: 23.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0
Serka-M/mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Language: Python - Size: 2.71 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 45 - Forks: 5
Serka-M/mmlong2-lite
Lightweight bioinformatics pipeline for microbial genome recovery
Language: Python - Size: 1.18 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 9 - Forks: 3
codecreatede/go-metagenomics-deep
golang complete metagenomics analysis long reads
Language: Go - Size: 1000 Bytes - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
rajaldebnath/Code-documentation
Project code documentation
Language: Jupyter Notebook - Size: 559 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
marbl/binnacle
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
Language: Python - Size: 3.26 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 2
ayixon/RaPDTool
Rapid Profiling and Deconvolution Tool for Metagenomes
Language: Python - Size: 7.98 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 111 - Forks: 87
hildebra/clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
Language: C++ - Size: 6.81 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
tli14/PanMAGs
Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness
Language: R - Size: 1.59 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
ohmeta/oral-assembly
Human oral metagenome-assembly-genome
Language: Jupyter Notebook - Size: 3.28 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0