GitHub topics: metagenomics-data
SPAAM-community/AncientMetagenomeDir
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
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RoyDibakar/National-Workshop-Microbiome-Informatics
National workshop on microbiome informatics
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rachelgriffard/micRoclean
An open-source R package containing decontamination pipelines for low-biomass microbiome data
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jvtarss/ccm-2024
TEIXEIRA, J. V. A.; SOUZA, E. C. Use of microbial fuel cell systems in wastewater treatment in connection with bioenergy generation. Desafios. Revista Interdisciplinar da Universidade Federal do Tocantins. Palmas, 2025. DOI: // Microbial fuel cells: Unveiling microbial diversity for sustainable wastewater treatment and bioenergy production
Language: Python - Size: 95.5 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 1
IBCHgenomic/bacterial-KO-phylogenomics
analyzing bacterial genome based ontologies and phylogenomics informativeness
Language: Python - Size: 2.46 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
IBCHgenomic/pangenome-metagenomics
pangenome metagenomics normlization for specific ids
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codecreatede/go-metagenomics-deep
golang complete metagenomics analysis long reads
Language: Go - Size: 1000 Bytes - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
dinesh2k19/Host-Plant-Rhizosphere-Microbiome
Host plant rhizosphere microbiome analysis
Size: 5.86 KB - Last synced at: 8 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
seandavi/cmgd_web
Web portal and API for the Curated Metagenomics Data project
Language: Python - Size: 138 KB - Last synced at: 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
LascauxZelia/AnA
An automated pipeline for metagenomic assembly and gene annotation
Language: Python - Size: 56.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ASSNAKE/assnake
Snakemake based framework for NGS data analysis and management
Language: Python - Size: 1.85 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 4
julianneyang/metagenomicsonhoffman
Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer
Language: Shell - Size: 158 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1
sablokgaurav/metapanran
MetaPanRan bring togthers Roary, PEPPAN, Pirate and PanROO for the comparative analysis of metagenomes and performs indepth analysis on evolutionary scales
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new-atlantis-labs/Living-Oceans
🌊 Robust workflows for gathering data about your local ocean.
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Tec-BASE-Laboratory/Metagenomica
En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2
Language: R - Size: 156 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 2
val92loz/HFD-NR_microbiome
This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.
Language: Python - Size: 215 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
Nucleomics-VIB/16S_analysis_pipeline
Building a pipeline for automated 16S analysis from paired short-reads or long-reads
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