bersilin-robert1609/CS6024-AACB-Metagenomic-Analysis

Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset

Language: Jupyter Notebook - Size: 31.7 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

laurentnoe/iedera

subset and spaced seed design tool

Language: C++ - Size: 1.26 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 2 - Forks: 1

pfeiferd/genestrip

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

Language: Java - Size: 69.7 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 3 - Forks: 0

FOI-Bioinformatics/flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Language: Python - Size: 967 KB - Last synced: 23 days ago - Pushed: 6 months ago - Stars: 63 - Forks: 7

prophyle/prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

Language: Python - Size: 30.3 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 31 - Forks: 5

EBI-Metagenomics/pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

Language: HTML - Size: 376 MB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 20 - Forks: 18

treangenlab/lemur

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Language: Python - Size: 93.8 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

bo1929/CONSULT-II Fork of noraracht/CONSULT

Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.

Language: C++ - Size: 21.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

hsmurali/Transitive_Annotation

The impact of transitive annotation on the training of taxonomic classifiers

Language: Jupyter Notebook - Size: 2.43 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

taxprofiler/taxpasta

TAXnomic Profile Aggregation and STAndardisation

Language: Python - Size: 2.15 MB - Last synced: 26 days ago - Pushed: about 1 month ago - Stars: 27 - Forks: 6

muellan/metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Language: C++ - Size: 149 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 55 - Forks: 10

sablokgaurav/metapanran

MetaPanRan bring togthers Roary, PEPPAN, Pirate and PanROO for the comparative analysis of metagenomes and performs indepth analysis on evolutionary scales

Language: R - Size: 123 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

exabiome/gtnet

The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences

Language: Python - Size: 58.4 MB - Last synced: 12 days ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

hivlab/discover-virome

discover-virome: identify and quantify viruses from metagenomic assemblies

Language: Python - Size: 13 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1

rcs333/CLOMP

:horse: CLinically Okay Metagenomic Pipeline :horse:

Language: Python - Size: 311 KB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 6 - Forks: 3

sunbeam-labs/sbx_krakenhll

Size: 22.5 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 3 - Forks: 2