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GitHub topics: krakenuniq

pfeiferd/genestrip

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

Language: Java - Size: 94.7 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 6 - Forks: 0

FOI-Bioinformatics/flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Language: Python - Size: 1.06 MB - Last synced at: 11 days ago - Pushed at: 3 months ago - Stars: 65 - Forks: 8

Related Keywords
kraken2 2 krakenuniq 2 metagenomic-classification 2 taxonomic-classifications 1 taxonomic-classification 1 ncbi-taxonomy 1 ncbi-database 1 gtdb 1 ganon 1 custom-taxonomy 1 custom-database 1 centrifuge 1 amplicon 1 16s 1 pathogen-genomics 1 metagenomic-analysis 1 kmer-counting 1 java 1 high-performance 1 genomic-data-analysis 1 genomes 1 command-line-tool 1 bioinformatics 1