shandley/awesome-virome

A listing of software, tools and databases useful for virome analysis

Language: HTML - Size: 50.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 36 - Forks: 7

pfeiferd/genestrip

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

Language: Java - Size: 94.8 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 6 - Forks: 0

vmikk/metagMisc

Miscellaneous functions for metagenomic analysis.

Language: R - Size: 1.59 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 50 - Forks: 11

cafferychen777/ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

Language: R - Size: 23.9 MB - Last synced at: 11 days ago - Pushed at: 14 days ago - Stars: 134 - Forks: 20

SteamedFish6/MetaRanker

A Computational Pipeline for Ranking Resistome Risk of Metagenomic Samples

Language: Python - Size: 7.81 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

KellsWorks/QIIME2-Microbiome-Analysis-Workflow

QIIME2 Microbiome Analysis Workflow

Language: Shell - Size: 12.7 KB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 0 - Forks: 0

cafferychen777/MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Language: R - Size: 104 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 41 - Forks: 6

KennthShang/PhaBOX

Local version of the virus identification and analysis web server (tool set)

Language: Python - Size: 21.2 MB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 49 - Forks: 5

muellan/metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Language: C++ - Size: 149 MB - Last synced at: 15 days ago - Pushed at: 2 months ago - Stars: 60 - Forks: 13

anuradhawick/seq2vec

Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!

Language: C++ - Size: 7.26 MB - Last synced at: 28 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0

cafferychen777/MicrobiomeStat-Turtorial-Professional-Version

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

Size: 178 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 2

katerinakazantseva/strainy

Graph-based assembly phasing

Language: Python - Size: 17.2 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 80 - Forks: 6

pfeiferd/genestrip-db

A selection of databases for Genestrip

Language: Shell - Size: 80.1 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

muneebdev7/metabolt

MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow

Language: Nextflow - Size: 2.12 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

adnantariq6400/Identification-of-key-taxonomic-and-metabolic-players

Metagenome Project

Language: Shell - Size: 7.81 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

Morteza1814/PARMIK

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

Language: C++ - Size: 274 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 1

treangenlab/lemur

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

Language: Python - Size: 58.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 24 - Forks: 1

bioinfonupeb/redemicro-jennefer

Molecular tools applied to the characterization of the vaginal microbiota of climacteric women

Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

anuradhawick/LRBinner

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

Language: Python - Size: 2.79 MB - Last synced at: 28 days ago - Pushed at: about 2 years ago - Stars: 32 - Forks: 5

rcedgar/viratax

Taxonomy classification of viral sequences / contigs

Language: Python - Size: 5.03 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 12 - Forks: 1

bioinfonupeb/redemicro-thayane

Metagenomic characterization of the intestinal microbiota of postmenopausal Brazilian women.

Language: Jupyter Notebook - Size: 110 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

deepomicslab/Interaction-redundancy

Deciphering microbial interactions with functional redundancy in human microbial community with partial information decomposition.

Language: Python - Size: 7.52 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

dubssieg/wisp

XGBoost implementation for bacteria family identification

Language: Python - Size: 421 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 4 - Forks: 0

lbl-cbg/gtnet

The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences

Language: Python - Size: 58.4 MB - Last synced at: 15 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

hermidalc/dragonfish

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

Language: Python - Size: 9.28 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

Galn3x/-2024-10-28-Metagenomics-online

En este taller aprenderás a gestionar y analizar datos metagenómicos, usar herramientas de línea de comandos y R Studio, y conectar con herramientas de la nube.

Language: HTML - Size: 2.22 MB - Last synced at: 11 days ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

EBI-Metagenomics/pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

Language: HTML - Size: 376 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 21 - Forks: 20

ac1513/MAGqual

MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards

Language: Python - Size: 116 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 0

iliapopov17/BI-Workshop-miniProjects

📚Workshop study projects in Bioinformatics Institute 2023-2024

Language: Jupyter Notebook - Size: 18.3 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

lanl/sequedex-core

For more information see https://sequedex.lanl.gov

Language: Java - Size: 1.52 MB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1

AmbrePetit/Metagenomics

The purpose of this repository is the metagenomic analysis of FastQ files

Language: Python - Size: 87.9 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

LaboratorioBioinformatica/MAGset

MAGset is a tool to analyze and compare MAGs of known species

Language: Java - Size: 13.9 MB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

raw-lab/mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

Language: HTML - Size: 105 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 11 - Forks: 1

meeranhussain/Microbiome_analysis

Comparative study of soil microbiome using QIIME2

Size: 16.6 KB - Last synced at: 3 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

ZiyueYang01/Phyrvm

Phyrvm: A one-stop software solution for RNA virus mining and host-association prediction

Language: Python - Size: 25.3 MB - Last synced at: 7 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0

MGX-metagenomics/MGX-gui

MGX graphical user interface

Language: Java - Size: 24 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

bersilin-robert1609/CS6024-AACB-Metagenomic-Analysis

Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset

Language: Jupyter Notebook - Size: 31.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

anuradhawick/seq2covvec

Fast sequence vectorization for metagenomics analysis. Converts input sequences into k-mer coverage vectors, fast! Read more detail in our paperhttps://doi.org/10.1093/bioinformatics/btaa441

Language: C++ - Size: 37.1 KB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

GreyGuoweiChen/VirBot

VirBot: a protein-based RNA virus detector for metagenomic data

Language: Python - Size: 21.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 22 - Forks: 5

jimmlucas/wgs-metasociomic

WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes

Language: Nextflow - Size: 6.79 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

ctmrbio/stag-mwc

StaG Metagenomic Workflow Collaboration

Language: Python - Size: 10.6 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 26 - Forks: 13

tmbuza/iMAP

iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline

Language: HTML - Size: 160 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 14 - Forks: 4

CMU-SAFARI/MetaTrinity

MetaTrinity is a novel metagenomic analysis tool employing efficient containment search techniques and heuristics for read mapping to achieve significant speedup while maintaining high accuracy. This positions MetaTrinity as an efficient solution, optimally balancing speed and precision in metagenomic analysis.

Language: HTML - Size: 53.3 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1

bo1929/CONSULT-II Fork of noraracht/CONSULT

Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.

Language: C++ - Size: 21.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

Sequedex/Sequedex-build

Files needed to build and run Sequedex V2.

Language: Java - Size: 2.19 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0

MG-RAST/tech-report

MG-RAST manual and documentation

Language: TeX - Size: 50.3 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 11

MG-RAST/MG-RAST

The MG-RAST Backend -- the API server

Language: Perl - Size: 15.7 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 43 - Forks: 27

iliapopov17/Human-Microbiome-Research-Manual

Repository for report for study project «Human Microbiome Research» by Blastim

Language: HTML - Size: 12.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Cloud-SPAN/nercMtGn-bashAutomation

Automating NERC metagenomics analysis tasks with bash scripts - quarto website style

Language: CSS - Size: 20 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

CMU-SAFARI/Genome-on-Diet

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

Language: Roff - Size: 63 MB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 4

Cloud-SPAN/nercMtGn-bashAutomation-book

Automating NERC metagenomics analysis tasks with bash scripts - quarto book style

Language: TeX - Size: 416 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

arvidgollwitzer/MetaTrinity

MetaFast is a novel metagenomic analysis tool employing efficient containment search techniques and heuristics for read mapping to achieve significant speedup while maintaining high accuracy. This positions MetaFast as an efficient solution, optimally balancing speed and precision in metagenomic analysis.

Language: HTML - Size: 53.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MG-RAST/pipeline

The MG-RAST pipeline

Language: Common Workflow Language - Size: 9.21 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 19

IceGreb/MetaSA-Scan

Metagenomic Sequence Analysis domain scanner

Language: Nextflow - Size: 1.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

Ivarz/Conifer

Calculate confidence scores from Kraken2 output

Language: C - Size: 396 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 7

pjtorres/metagenomics_tutorial

Analyzing shotgun data

Language: HTML - Size: 34.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 2

new-atlantis-labs/Metagenomics

🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

Language: Jupyter Notebook - Size: 47.1 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2

snz20/carnelian

Language: Python - Size: 1.84 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 1

rusher321/rmeta

collect the R function for daily work

Language: HTML - Size: 2.43 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 2

MetAnnotate/MetAnnotate

MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.

Language: JavaScript - Size: 12.9 MB - Last synced at: over 1 year ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 0

MattCzajkowski/GenCoF

A graphical user interface for a genomic contamination filtering pipeline to filter out reads from metagenomic files

Language: C++ - Size: 24.9 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 4

zjyoung9490/Metagenomics---Analysis-of-Colorectal-Cancer-Patients

An analysis of the metagenomic profiles of various colorectal cancer patients and healthy controls to try and identify distinct signatures between various stages of the disease.

Language: Jupyter Notebook - Size: 1.2 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

GenomicaMicrob/mg_classifier

Super fast script for classifying metagenomic 16S/18S sequences

Language: Perl - Size: 1.25 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

mariorauh/AnnotationSummary

Annotation Summary for MG-Rast -> Megan6 Annotations

Language: Python - Size: 25.4 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

mmpust/raspir

Raspir, the rare species identifier

Language: Python - Size: 723 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 2

treangenlab/komb

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

Language: C++ - Size: 242 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0

Ahmed-A-Mohamed/metaGEENOME

metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.

Language: R - Size: 13.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

huyvanvnese/Metagenomics-Analysis-on-NIG-Supercomputer

Simple Script for Metagenomics Analysis on NIG Supercomputer (National Institute of Genetics)

Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

carleton-spacehogs/pangenome-selection

A repository as a Supplementary Methods of Moulana et al., 2019

Language: Python - Size: 5.04 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

MicrobialMetaGenomics/Coverage-Graph-Generator

The software estimate the percentage of the coverage of reads for different samples provided as MAGs.

Language: Jupyter Notebook - Size: 89.8 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

SevanEsaian/Giant-Kelp-Associated-Microbiome-Metagenomics

This repository contains bash scripts, R code, and explanations for the steps involved in assembling and analyzing the metagenomes of bacteria from giant kelp blades in the Santa Barbara Channel.

Size: 23.4 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

angelsan203/MetGen_R

A code in R to make a Metagenomic analysis from data obtained from a taxonomical classification from KRAKEN 2

Language: R - Size: 105 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

RafaPe/Nanopore_metagenomic_analysis

Analysis of metagenomic data sequenced using nanopore techonology

Language: R - Size: 76 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

kholoud-mamdouh/Bioinformatics

Analysing and Visualizing (EDA) and Cluster data Modeling for metagenomics and metatranscriptomics data to different microbial ecosystems

Language: Jupyter Notebook - Size: 473 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

strumenti-formali-per-la-bioinformatica/bowbin-pipeline-rilevazione-virus-dati-metagenomici

[a.a. 22/23] A. Aquino, N. Gagliarde

Language: Python - Size: 125 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

guillaume-gricourt/HmnTrimmer

Fast-polyvalent trimmer used for several applications of next-generation sequencing

Language: HTML - Size: 11.9 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

SchulzLab/ORNA

Fast in-silico normalization algorithm for NGS data

Language: C++ - Size: 24.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 4

pnnl/mercat

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

Language: Python - Size: 2.7 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 18 - Forks: 13

hivlab/discover-virome

discover-virome: identify and quantify viruses from metagenomic assemblies

Language: Python - Size: 13 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

arminms/amstools

Common bioinformatic tools in C/C++

Language: C++ - Size: 43 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Ash1One/MAPFA

Metagenomic Analysis Pipeline for Food Animals

Language: Python - Size: 49.8 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

astrdhr/metagenomics-soil

BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:

Language: Shell - Size: 37 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

jungsoh/high-throughput-sequence-data-handling-course

Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment

Language: HTML - Size: 28.3 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

chuanfuyap/motu-python-package

Tools to handle metagenomic data manipulation

Language: Python - Size: 56.6 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ulitskyLab/alphabetMetagene

Analysis of input alphabet sequential data

Language: R - Size: 68.4 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

frubino/mgkit-docker-repo

Docker image for MGKit

Language: Dockerfile - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

mmpust/airway-metagenome-infants

R scripts, metadata, input files & reference database

Size: 464 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

Kur1sutaru/16SrDNA_stats Fork of tiagofalconlopes/16SrDNA_stats

A simple code to analyze OTU table and RNA-seq normalization in R

Language: R - Size: 14.7 MB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

bioinfonupeb/microbiota_da_mulher_lbbm

Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP

Language: HTML - Size: 63.1 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

meierdv/avdat_metagenome

This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes in an arid biological soil crust community" by Dimitri Meier, Stefanie Imminger, Osnat Gillor and Dagmar Woebken. The detailed rationale behind the metagenome analysis steps is explained in "Metagenome_analysis.pdf" in this repository and in the Supplementary Methods section of the manuscript.

Language: Shell - Size: 152 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

pjtorres/Viral_metagenomics

Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation

Language: Python - Size: 77.1 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 1

QuentinLetourneur/Let-it-bin

Optimize workflow for binning metagenomic short reads from multiple samples

Language: Nextflow - Size: 193 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 2

hossainlab/ARGs

Antibiotic Resistance Genes Finding

Language: Jupyter Notebook - Size: 1.73 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

nioo-knaw/hydra

Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)

Language: Python - Size: 4.11 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1

YaccConstructor/YC.Bio

Tools for metagenomic assembly processing.

Language: F# - Size: 34.2 MB - Last synced at: 3 months ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

yingeddi2008/utility

utility scripts for metagenomics, RNAseq etc. reads processing.

Language: Python - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0