GitHub topics: 18s
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Language: Nextflow - Size: 16.6 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 200 - Forks: 135
adriaaula/dada2_guidelines
A repository with a general dada2 pipeline for amplicon processing
Language: R - Size: 80.8 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 9 - Forks: 5
GenomicaMicrob/chimera_detector
A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
Size: 16.6 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
GenomicaMicrob/mg_classifier
Super fast script for classifying metagenomic 16S/18S sequences
Language: Perl - Size: 1.25 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
GenomicaMicrob/metagenomic_pipeline
Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS
Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
Language: Nextflow - Size: 109 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 5
vaulot/Ribeiro_CARBOM_ISME_2018
Supplementary files for Ribeiro et al. ISME 2018
Language: Shell - Size: 1.23 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0
itsmisterbrown/microfiltR
accessory functions for processing microbial community data
Language: R - Size: 3.84 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 11
terrimporter/18SClassifier
This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.
Language: Perl - Size: 5.58 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0
nioo-knaw/hydra
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
Language: Python - Size: 4.11 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
terrimporter/JesseHoage2018
This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
Language: Perl - Size: 15.6 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0