seaflow-uw/popcycle

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

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SalishSeaCast/SOG-Bloomcast

Superseded by https://github.com/SalishSeaCast/SOG-Bloomcast-Ensemble. SoG-bloomcast is a an operational oceanography project to provide daily updated forecasts of the first spring phytoplankton bloom in the Strait of Georgia on the British Columbia south coast. In addition to being part of an active research program on the physics and biogeochemistry of the Salish Sea, SoG-bloomcast is intended as a demonstration of how small university research groups can use lightweight software automation to publish near-real-time model results to the web. SoG-bloomcast uses the SOG coupled physics-biogeochemical model for deep estuaries to do its science.

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CohenLabUGA/SAB_isolates

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OSU-CEOAS-Schmittner/UVic2.9

This is the base code of the University of Victoria (UVic) Earth System Climate Model version 2.9 with the Model of Ocean Biogeochemistry and Isotopes (MOBI).

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SalishSeaCast/SOG-Bloomcast-Ensemble

Branch of the SoG-bloomcast project that uses an ensemble forecast.

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Isabell-Hochfeld/Adaptive-Phytoplankton-Community-Model

This work is part of the PhytoArk project.

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ayushnag/sophy

Southern Ocean phytoplakton observations stored in a relational SQL database

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AquaticEcoDynamics/libaed2

Code for the AED2 water quality / ecology library

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JoanaR/multi-mode-CNN-pytorch

A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers

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dkauf42/PIcurves

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

Language: MATLAB - Size: 229 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

dkauf42/eppGrowMax

Function that calculates the maximum phytoplankton growth rate at specified temperature(s) according to the Eppley growth curve

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jllort/PISCESv1_1D

As part of my PhD I created a 1D biogeochemical configuration based on PISCES model (version 1 - Bopp et al, 2005) The configuration was created to study the impact of environmental changes (mainly Mixed Layer Depth and Light) over Southern Ocean primary production, from the seasonal to decadal scales.

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robertladwig/spinyAnoxia

Scripts, data and outputs to process the data and recreate the figures from Rohwer, Ladwig et al. (2022)

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lg11235/mixotroph-adaptive-dynamics

Provides Mathematica code to generate results from "Modeling the Metabolic Evolution of Mixotrophic Phytoplankton in Response to Rising Ocean Surface Temperatures"

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CassiaCai/MJO_chlorophyll_a_SST

Research Derby project to study the connection between MJO, chlorophyll-a, and SST

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vaulot/Ribeiro_CARBOM_ISME_2018

Supplementary files for Ribeiro et al. ISME 2018

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themiskon/end2end

from first principles to end to end ecosystem models

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PStegmann/Westberry_08_model

An implementation of the depth-resolved phytoplankton primary production model by Westberry et al. 2008.

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arivers/fidoplankter

An online calculator for iron limitation culture experiments

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kmiller222/es494_data

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poplarShift/ice-edge

Code and data for Randelhoff et al. (2019), "The evolution of light and vertical mixing across a phytoplankton ice-edge bloom"

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vaulot/R_flow-cytometry-correction

Correction for flow cytometry histograms when part of the population is in noise

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