Aariq/li6400-data-wrangling

the LI6400 portable photosynthesis meter exports data as a series of poorly formatted .xls files. If you've used "add remark" to indicate sample ID, these are shown as rows, not a separate column. This script extracts relevant data, and moves the sample ID information from remarks into a column.

Language: R - Size: 1.43 MB - Last synced: 16 days ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

pwendering/ArabidopsisCoreModel

Platform for further development of the Arabidopsis core metabolic model

Language: MATLAB - Size: 392 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

nullptr3/lsp-photodiode

PAR Toolkit for LSP @ UCSC

Language: Python - Size: 1.92 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

cropbox/LeafGasExchange.jl

🍃 coupled leaf gas-exchange model

Language: Julia - Size: 263 KB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 2

jnnsbrr/PhotoBioDynamics

Small model to simulate biomass production on a global scale. Products are Gross Primary Production (GPP), Net Primary Production (NPP). It is based on a modified version of the Farquhar approach (Haxeltine and Prentice 1996, Farquhar et al. 1980). Where possible, it uses vectorization and parallelization and dynamically downloads latest av

Language: R - Size: 75.9 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 1

Prikaziuk/FvCB_photosynthesis

GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)

Language: MATLAB - Size: 614 KB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 3

dkauf42/PIcurves

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

Language: MATLAB - Size: 229 KB - Last synced: 8 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

ManuelLamothe/RapidACi

R scripts for automatic correction of Rapid A-Ci curves

Language: R - Size: 4.63 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

trevorkeenan/gpp-co2

Code to reproduce the analysis and figures in 'A constraint on historic growth in global photosynthesis due to increasing CO2' Keenan et al. 2021. Nature https://www.nature.com/articles/s41586-021-04096-9

Size: 134 KB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 6 - Forks: 8

SeBassTian23/photosynthesis-scheme

Generate a scheme of the photosynthetic machinery for presentations or slides.

Language: JavaScript - Size: 370 KB - Last synced: about 2 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

SeBassTian23/Visual-Phenomics-Python

Import data output from Visual Phenomics into a DataFrame

Language: Python - Size: 122 KB - Last synced: about 2 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

HarveyBates/Open-JIP

An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.

Language: C++ - Size: 218 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 21 - Forks: 2

HarveyBates/Phenobottle

An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.

Language: C++ - Size: 50.1 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 45 - Forks: 5

MarkusLoew/GFS3000Import

R package to import files generated by the WALZ GFS3000 photosynthesis system

Language: R - Size: 30.3 KB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

MarkusLoew/Li6400helper

Helper functions for Licor 6400 IRGA gas exchange files

Language: R - Size: 32.2 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

MarkusLoew/FitAQ

Yet another R package to analyse the light response of photosynthesis

Language: R - Size: 30.3 KB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

mdekauwe/GDAY

GDAY simulates carbon, nitrogen & water dynamics

Language: C - Size: 16.9 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 14 - Forks: 31

lukaseamus/Laminaria-pigments

Data and R code accompanying article 10.3354/meps13886 in Marine Ecology Progress Series.

Language: R - Size: 3.81 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

lukaseamus/CSP

Data and R code accompanying article 10.1111/gcb.16299 in Global Change Biology

Language: R - Size: 19.9 MB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

HPQC-LABS/FeynDyn

Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email [email protected] for the latest version or any questions.

Language: MATLAB - Size: 43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 20 - Forks: 11

cropbox/plants2020

coupled leaf gas-exchange model for C₄ leaves comparing stomatal conductance models

Language: Jupyter Notebook - Size: 2.28 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 2 - Forks: 1

fonglh/photosynthesis-board-game Fork of sohymg/photosynthesis-board-game

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SmartBioTech/PBR-ControlScripts

Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client

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ess-dive-community/essdive-leaf-gas-exchange

READY TO USE. Documentation associated with the leaf-level gas exchange data and metadata reporting format for the ESS-DIVE repository

Size: 209 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 2

savetz/AppleII-photosynthesis

Apple II source code, in the Forth language, for a commercial photosynthesis educational program

Size: 101 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

HarveyBates/PARmeter

Open-source PAR Meter

Size: 2.12 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

LukeEcomod/APES_Jan2016

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Size: 9.01 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 2

bioatmosphere/UVAFMEVOC2017

Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.

Language: R - Size: 11.2 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

bluegreen-labs/rpmodel Fork of geco-bern/rpmodel

An R implementation of the P-model (new fork).

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AndrePinheiroPT/ChloroplastCode

Do you like plants? If yes, check out my program which tries simulate a chloroplast!

Language: Python - Size: 1020 KB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

ARCHIMED-platform/archimed-platform.github.io

The website for the ARCHIMED platform

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Prikaziuk/Spe

Flux partitioning: NEE -> GPP

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MaisaMilena/WWDC18_Photosynthesis

[accepted] This is my playground submitted for WWDC18 Scholarship

Language: Swift - Size: 1.43 MB - Last synced: 11 months ago - Pushed: about 6 years ago - Stars: 3 - Forks: 1