GitHub topics: individual-based-modelling
JuliaDynamics/Agents.jl
Agent-based modeling framework in Julia
Language: Julia - Size: 1.83 GB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 802 - Forks: 135
DEMENT-Model/DEMENTpy
A spatially explicit trait- and individual-based microbial systems modelling framework
Language: Python - Size: 29.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 14 - Forks: 7
UCL/TLOmodel
Epidemiology modelling framework for the Thanzi la Onse project
Language: Python - Size: 156 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 26 - Forks: 13
ropensci/nlrx
nlrx NetLogo R
Language: R - Size: 88.5 MB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 79 - Forks: 12
babak2/WHD
Within Host Dynamics
Language: C++ - Size: 18.8 MB - Last synced at: 25 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
mlange-42/arche-pixel
OpenGL graphics and plots for the Arche Entity Component System (ECS).
Language: Go - Size: 178 KB - Last synced at: 19 days ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0
mlange-42/arche-model
Everything you need to rapidly build a model with the Arche Entity Component System (ECS).
Language: Go - Size: 130 KB - Last synced at: 19 days ago - Pushed at: 3 months ago - Stars: 14 - Forks: 0
klanting/UA-2024-Summer-Modelling-Infectious-Disease-Case-Study Fork of lwillem/modelling-intro
Case Study expanding the infectious disease modelling in R tutorial
Language: R - Size: 50.9 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
pratikunterwegs/pathomove
Individual-based model to simulate the evolution of movement strategies under risk of pathogen spread.
Language: C++ - Size: 7.43 MB - Last synced at: 28 days ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
DiODeProject/MuMoT
Multiscale Modelling Tool - mathematical modelling without the maths
Language: Python - Size: 31.6 MB - Last synced at: 28 days ago - Pushed at: about 3 years ago - Stars: 22 - Forks: 6
mlange-42/arche
Arche is an archetype-based Entity Component System (ECS) for Go.
Language: Go - Size: 9.04 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 136 - Forks: 8
mrc-ide/individual
R Package for individual based epidemiological models
Language: R - Size: 12.9 MB - Last synced at: 7 days ago - Pushed at: 8 months ago - Stars: 30 - Forks: 16
trondkr/pyibm
An individual based model for larval cod
Language: Python - Size: 270 KB - Last synced at: 10 months ago - Pushed at: almost 12 years ago - Stars: 0 - Forks: 0
Kanchana-Bandara/PASCAL-v4.0
Pan-Arctic Behavioral and Life-history Simulator for Calanus: a 3D super-individual-based model.
Language: Python - Size: 1.86 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ArroyoAndre/covidsimulation
Covid Epidemics Simulation with Simpy
Language: Python - Size: 835 KB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 29 - Forks: 10
rjzupkoii/PSU-CIDD-Malaria-Simulation
Spatial individual-based model of malaria with a focus on drug resistance evolution.
Language: C++ - Size: 49.4 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 4
bonilab/malariaibm-spatial-Rwanda-561H 📦
Complete source code and intermediary files to accompany the manuscript published in Nature Medicine.
Language: C++ - Size: 5.26 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
johannes-lee/SIRD-vaccination
Python individual-level SIRD model for studying vaccination prioritization
Language: Jupyter Notebook - Size: 1.73 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
rosemckeon/ploidy
How does disturbance on a landscape affect the establishment of new polyploid plant species?
Language: R - Size: 2.03 GB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 0
dgoto2/SEIBMFoodWeb
A spatially explicit individual-based food web model for a large ecosystem
Language: IDL - Size: 12.2 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dgoto2/SEIBMRiverFish
A spatially explicit (1D) individual-based model for large river fish
Language: IDL - Size: 10.8 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
jacobnabe/DEPONS
DEPONS model: Simulating effects of disturbances on the North Sea harbour porpoise population
Language: Java - Size: 235 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 5
bonilab/malariaibm-spatial-BurkinaFaso-2021 📦
Complete source code and intermediary files to accompany the manuscript published in PLOS Global Public Health.
Language: C++ - Size: 3.09 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 2
charlesrocabert/puutools
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
Language: C++ - Size: 7.85 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
berndpanassiti/HostSwitch
HostSwitch: An R Package to simulate host switching by a parasite
Language: R - Size: 14.6 MB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
RowanDurrant/DFTD
Individual-based metapopulation model of devil facial tumour disease.
Language: R - Size: 482 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
dgoto2/EcogenFish
An individual-based model for fish adaptive behaviors using genetic algorithms
Language: IDL - Size: 20.5 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
bioatmosphere/UVAFMEVOC2017
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
Language: R - Size: 11.2 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
charlesrocabert/Simple-Evolvability-Model
Individual-based model simulating the evolution of random genetic regulation networks in variable environments.
Language: C++ - Size: 3.36 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
FelixNoessler/Buffers-or-corridors-for-great-crested-newts
Individual based-model to determine which management option (buffers or corridors between ponds) is better for promoting the population of newts.
Language: Jupyter Notebook - Size: 38.9 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
FelixNoessler/Individuals-based-modelling-with-RangeShiftR
Individual-based model of a theoretical reintroduction of wild boars in France
Language: R - Size: 14.1 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
trondkr/Glomma_particles
Repository for developing sediment module for OpenDrift for modeling flow of particles in Glomma
Language: Python - Size: 7.44 MB - Last synced at: 10 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
wtennant/arbo_gpu_fit
Fitting a stochastic individual based model for arboviral disease.
Language: C++ - Size: 94.7 KB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
dgoto2/SEIBMEarlyLife
A spatially explicit individual-based model for fish early life histories
Language: IDL - Size: 27.3 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
ap-browning/scratchIBM
Supplementary material for "Identifying density-dependent interactions in collective cell behaviour"
Language: MATLAB - Size: 19.5 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
cornejotux/MPA-and-fish-movement
Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309
Language: C++ - Size: 5.79 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
marcosci/mini_taskview_ibm
Taskview for all IBM related 📦 packages in the R universe
Size: 10.7 KB - Last synced at: 12 days ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 2
fsfrazao/Trees
Python package for implementing individual-based forest models
Language: Python - Size: 8.75 MB - Last synced at: about 1 month ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
jacobnabe/PorpoiseModel
Individual-based model for assessing the effects by-catch, ship noise etc. on harbour porpoises in the inner Danish waters
Language: NetLogo - Size: 6.37 MB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0