GitHub topics: population-dynamics

Repositories

IBCHgenomic/population-scale-variant-vcf

population scale variant filter

Language: Rust - Size: 11.7 KB - Last synced at: about 11 hours ago - Pushed at: about 12 hours ago - Stars: 0 - Forks: 0

EcoDynIZW/EcoDynIZW.github.io

We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.

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allenmonkey970/Slime-Evolution-Simulation

An ecological simulation modeling competition between "greedy" and "minimal" resource gathering strategies in a virtual slime population. Features spatial interaction, genetic competition, and visualizations.

Language: Python - Size: 6.47 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

fishR-Core-Team/FSA

FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.

Language: R - Size: 106 MB - Last synced at: 5 days ago - Pushed at: 8 days ago - Stars: 70 - Forks: 24

sdekhterman/cpp-population-growth

A C++ project used to create a view population growth where a linked list (pointers) stores the population over time.

Language: C++ - Size: 23.4 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0

OACColombia/vpm_eBird

This repository stores the code for applying Viability Population Monitoring (trend of extinction risk assessment through monitoring) to eBird data. It includes fitting special version of the Stochastic Gompertz State-Space population model.

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rcfdtools/R.SIGE

CURSO - Taller de Sistemas de Información Geográfica aplicados a Desarrollo y Ordenamiento Territorial (OT) - SIGE

Language: Jupyter Notebook - Size: 7.53 GB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0

ronenliberman/Florida_Octocoral_forests

Florida_Octocoral_forests

Language: HTML - Size: 3.91 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

alexplaka/AbStochKin

Agent-based Stochastic Kinetics

Language: Python - Size: 20.6 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 0

ReMobidyc/ReMobidyc

web based multi-agent simulator for individual-based modeling in population dynamics and ecotoxicology

Language: Smalltalk - Size: 19.7 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 3

sizespectrum/mizer

Multi-species size-based ecological modelling in R

Language: R - Size: 234 MB - Last synced at: 4 days ago - Pushed at: 4 months ago - Stars: 39 - Forks: 43

dbroadway/collaborative-stewardship

This project simulates a Collaborative Stewardship society, modeling the interactions between multiple "Resilience Hubs" in a post-capitalist, environmentally-conscious world. The simulation explores how communities might balance resource management, population growth, environmental health, and social factors in a sustainable system.

Language: Python - Size: 81 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

oliviergimenez/pyrenean-brown-bear-abundance

Code and data for the estimation of Pyrenean brown bear abundance

Language: HTML - Size: 6.33 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0

khaylheb99/Data

Analysis of various datasets

Language: Jupyter Notebook - Size: 52.9 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

MagdalenaBunbury/SouthernLevant

Dataset of 4,657 radiocarbon dates from the Southern Levant spanning the last 50,000 years

Language: R - Size: 2.79 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

marchtaylor/FLIBM

FLIBM is individual-based model for the simulation of fish stock dynamics

Language: R - Size: 31.8 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

SakuHam/FinlandSimulation

Simulation of population dynamics in Finland.

Language: Python - Size: 1.28 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

vsudbrack/vsudbrack.github.io

My personal homepage

Language: SCSS - Size: 78.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 1

artificial-life-lab/population-dynamics

Library to conduct experiments in population dynamics.

Language: Python - Size: 89.8 KB - Last synced at: 25 days ago - Pushed at: 6 months ago - Stars: 13 - Forks: 3

matchy-at-ethz/24hs-evodynamo

📈2024 Herbstsemester Evolutionary Dynamics @ ETHz

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garethjns/social-distancing-sim

Simulating the effect of social distancing on disease spread through a population graph.

Language: Python - Size: 279 MB - Last synced at: 2 days ago - Pushed at: 6 months ago - Stars: 4 - Forks: 4

James-JH/DataVis2 Fork of jhuy0014/DataVis2

Australian Data Visualisation Project 2

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SNARL1/translocation

Project describing frog translocations to reestablish populations in the presence of infectious disease

Language: R - Size: 203 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 1

rbchan/popdy-inference

A course on statistical inference for models of population dynamics. Aimed at wildlife ecology graduate students at UGA.

Language: TeX - Size: 10.7 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

Karim-Mane/mpbr

Population Genomics Analysis for Plasmodium falciparum

Language: R - Size: 84.9 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

cjabradshaw/CyprusHippoElephant

Demographic models predicting the effect of human hunting on now-extinct dwarf hippopotamus and dwarf elephant in Cyprus

Language: R - Size: 4.91 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 3

BNTechie/Dynamical-Systems

Language: Mathematica - Size: 9.38 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

yychentw/cooperation-and-population-dynamics

This repository is for open access to source codes and data for the manuscript "Cooperation and lateral forces: moving beyond bottom-up and top-down drivers of animal population dynamics".

Language: C++ - Size: 4.42 MB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

PoisotLab/BioEnergeticFoodWebs.jl

A unified interface for simulations of the Bio-Energetic model on food webs

Language: Julia - Size: 2.57 MB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 28 - Forks: 14

ZEROXMU/Flu_vac_model_mc_2024

The mathematical modeling of the optimal strategy for influenza vaccination was studied using a transmission dynamics model that considered population movement, province, and age group

Language: Jupyter Notebook - Size: 2.47 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

caravagnalab/biPOD

Bayesian inference for population dynamics

Language: R - Size: 305 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MelAGndy/master

Projects

Language: Jupyter Notebook - Size: 25.6 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

samuelbx/pyspecies

Blazing-fast simulation of advanced population dynamics

Language: Python - Size: 32.4 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 1

bconti8/CA_1

Demographic evolution of the Republic of Ireland, utilizing data from the Central Statistics Office (CSO) spanning over seven decades, from 1951 to 2023.

Language: Jupyter Notebook - Size: 3.9 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

theislab/pseudodynamics

Dynamic models for single-cell RNA-seq time series.

Language: Jupyter Notebook - Size: 31.9 MB - Last synced at: 5 months ago - Pushed at: over 6 years ago - Stars: 39 - Forks: 6

oliviergimenez/popdyn-workshop

Website of workshop Quantitative Methods for Population Dynamics in R

Language: HTML - Size: 177 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 5

babak2/HAAMoS

Hybrid Aggregated Agent‐based Microsimulation of Segregation

Language: Java - Size: 13.6 MB - Last synced at: 30 days ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

forhad-ds/Bangladesh-Population-3D-Visualization-Rayshader-R

Explore Bangladesh's population density in 3D using R and rayshader, transforming spatial data into immersive visualizations. Leveraging the power of tidyverse, sf, and the Kontur Population dataset for robust spatial analysis

Language: R - Size: 58.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

thierrygrimm/population-dynamics

A collection of computational-biological population dynamics simulations

Language: Jupyter Notebook - Size: 295 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

AmeanAsad/stochastic-disease-simulation

A simulation model for pandemic spread using population dynamics of infectious diseases

Language: Python - Size: 11.7 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 5 - Forks: 0

atyre2/NRES450_book

Lecture notes for NRES 450 Biology of Wildlife Populations, University of Nebraska

Language: TeX - Size: 26.1 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 3

dilsaddt/mlemur_seasonal_survival_0923

Seasonal survival analysis of the gray mouse lemur population in Kirindy Forest, Madagascar using multistate capture-recapture models.

Language: R - Size: 47.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

wengngai/NSSF_IBMs

Spatially explicit individual based models of tree species in the Nee Soon Freshwater Swamp Forest (NSSF) catchment in Singapore

Language: R - Size: 72.7 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

dgoto2/SEIBMRiverFish

A spatially explicit (1D) individual-based model for large river fish

Language: IDL - Size: 10.8 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

cjabradshaw/SahulHuman

R code for reproducing age-structured models of ancient humans entering Sahul

Language: R - Size: 3.05 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 3

henriksen-marcus/Moose-Gamification

A simulator for a moose population and surrounding ecosystems. A student gamification project to make learning more engaging.

Language: Mathematica - Size: 181 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 3

Benoit-Muller/Projet-de-Bachelor

Bachelor project: "Stability of linear dynamical systems and application to Lotka-Volterra equations and epidemiology"

Language: TeX - Size: 2.42 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

JonasVasconcelos/FiShiny

Shiny interface for growth model fit

Language: R - Size: 1.36 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

jjniev01/BSGMi

Built-Settlement Growth Model interpolation (BSGMi) is an interpolative model that allows for the spatial prediction of annual built-settlement (B-S) extents given observed extents at two different time points. Published article DOI 10.1016/j.compenvurbsys.2019.101444

Language: R - Size: 309 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

OrangePomeranian/genetics_of_population

Study of microsatellite sequences in the Red fox population

Size: 69.3 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

louisgt/SodaPop

A tool for multiscale forward-time simulation of protein evolution.

Language: C++ - Size: 8.44 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 6

fishR-Core-Team/RFishBC

This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.

Language: R - Size: 163 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 1

amshenoy/population-simulator

Compartment model creator and simulator for continuous-time dynamical systems

Language: JavaScript - Size: 27.3 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

paul-f-baumeister/impera-simulator

A simulator for populations living and sharing resources on a (spherical) map

Language: C++ - Size: 12.2 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mpokojovy/popdyn

US Population Modeling & Forecasting

Language: MATLAB - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

programandoconro/Simulaciones-de-epidemias

Simulaciones de epidemias 👾 en poblaciones con mezclas homogéneas 👪 utilizando modelos basados en agentes autónomos 🤖

Language: R - Size: 196 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 4

droglenc/RcourseMidwest2018 📦

Materials for the Introductory Fisheries Analyses with R workshop at 2018 Midwest Fisheries and Wildlife Conference (Milwaukee, WI)

Language: R - Size: 3.56 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2

cvzi/wator 📦

Simple implementation of the Wa-Tor simulation of population dynamics of prey and predators 🐟🦈

Language: Python - Size: 5.75 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

jjackson-eco/mammal_weather_lifehistory

Study on the terrestrial mammals to investigate how weather influences annual abundance changes

Language: HTML - Size: 907 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 0

oliviergimenez/capture-recapture-review

material for a review on capture-recapture methods and questions

Size: 48.8 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 9 - Forks: 0

kennethassogba/modeling-in-population-dynamics

We study four models including those of Lotka-Volterra and Verhulst. In each case we will do a balance point study and a numerical resolution with Scilab

Language: Scilab - Size: 542 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ecopopr/ecopopr-app

Ecologia interativa app

Language: HTML - Size: 1.69 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

mammal-proj/mammals

Tools for the implementation of population dynamics analysis.

Language: R - Size: 14.1 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

projectmesadata/syntheticpopulation

Creates a data pipeline from WorldPop.org so users can build a realistic synthetic population to seed their models.

Language: Jupyter Notebook - Size: 21 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 6

ferdiUP/various

Python scripts on various topics in pure and applied math

Language: Python - Size: 25.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

chus-chus/cellular-automata

Simulator for the study of genetically stable and mutator cell populations in a cancer setting.

Language: Python - Size: 20.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

oliviergimenez/matrix-models-workshop

Material for a workshop on matrix population models

Language: R - Size: 7.96 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

tiasondjaja/linearalgebra-computational-projects

Computational linear algebra projects (python, numpy) for NYU Math-UA 140: Linear Algebra

Language: Jupyter Notebook - Size: 574 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

Francesco-Zeno-Costanzo/Populations

simple codes of population dynamics

Language: Python - Size: 12.7 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

BIO6032/2021_replication_LipstichEtAl_1996

The population dynamics of vertical and horizontal transmission allow for the study of the evolution of virulence. Here, we replicate a model by Lipsitch et al. (1996) analyzing the trade-offs between both types by modeling population dynamics between 1 host population and 100 pathogen strains added individually every 1,000 timesteps.

Language: Julia - Size: 18.1 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1

mihaitudor9/salt_lake_county_mobility_patterns

Extraction of mobility patterns from SafeGraph data

Language: Jupyter Notebook - Size: 8.67 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

FelixNoessler/Buffers-or-corridors-for-great-crested-newts

Individual based-model to determine which management option (buffers or corridors between ponds) is better for promoting the population of newts.

Language: Jupyter Notebook - Size: 38.9 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jjniev01/BSGMe

Built Settlement Growth Model - extrapolation. Published article DOI 10.3390/rs12101545

Language: R - Size: 10.7 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

cjabradshaw/DensityFeedbackSims

Stochastic simulations of population abundance with known component density feedback on survival to test for ability to return ensemble feedback signal

Language: R - Size: 18 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

SoniSiddharth/Data-Science-Implementations

The repository contains implementation of some data science algorithms

Language: Jupyter Notebook - Size: 1.63 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

savannahwild/SIR_model_for_COVID-19

Using the SIR model to predict COVID-19 infection patterns. It is a compartmental model with the variables S, I and R for the number of susceptible, infectious and resistant individuals, respectively.

Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

lauinger/a-general-theory-for-stock-dynamics

Code and data for the paper "A general theory for stock dynamics of populations and built and natural environments" by D. Lauinger, R. G. Billy, D. B. Müller and F. Vasquéz.

Language: Jupyter Notebook - Size: 1.31 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

AmirAli-N/DiabetesIntervention_Simulation

Comparing the Lifestyle Interventions for Pre-diabetes: An Integrated Microsimulation and Population Simulation Model

Language: C++ - Size: 10.7 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

djhocking/sparcnetfsu

Research compendium for SPARCnet at Frostburg State University

Language: R - Size: 1.46 MB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

cornejotux/MPA-and-fish-movement

Source code of the model used in Cornejo-Donoso, J., Einarsson, B., Birnir, B., Gaines, S.D. (2017) Effects of fish movement assumptions on the design of a marine protected area to protect an overfished stock. PlosONE 12(10): e.0186309 https://doi.org/10.1371/journal.pone.0186309

Language: C++ - Size: 5.79 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0