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GitHub topics: epidemics

jtmatamalas/MMCAcovid19.jl

Microscopic Markov Chain Approach to model the spreading of COVID-19

Language: Julia - Size: 674 KB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 19 - Forks: 9

UofUEpiBio/epiworldR

A general framework for quick epidemiological ABM models

Language: R - Size: 54.2 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 9 - Forks: 3

GiulioRossetti/ndlib

Network Diffusion Library - (for NetworkX and iGraph)

Language: Python - Size: 2.07 MB - Last synced at: about 18 hours ago - Pushed at: 10 months ago - Stars: 287 - Forks: 81

epistorm/epydemix

epydemix, the ABC of epidemics

Language: Jupyter Notebook - Size: 16 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 7 - Forks: 1

jangevaare/Pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

Language: Julia - Size: 17.7 MB - Last synced at: 3 days ago - Pushed at: over 2 years ago - Stars: 72 - Forks: 10

CodeForPhilly/chime

COVID-19 Hospital Impact Model for Epidemics

Language: Python - Size: 7.67 MB - Last synced at: 14 days ago - Pushed at: about 2 years ago - Stars: 208 - Forks: 152

americocunhajr/EPIDEMIC

EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.

Language: MATLAB - Size: 26.7 MB - Last synced at: 3 days ago - Pushed at: 21 days ago - Stars: 16 - Forks: 5

ryansmcgee/seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Language: Python - Size: 25.3 MB - Last synced at: 17 days ago - Pushed at: about 2 years ago - Stars: 666 - Forks: 220

americocunhajr/epidWaves

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

Language: MATLAB - Size: 9.82 MB - Last synced at: 3 days ago - Pushed at: 21 days ago - Stars: 3 - Forks: 2

americocunhajr/COVID19RJ

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

Language: Jupyter Notebook - Size: 10.7 GB - Last synced at: 3 days ago - Pushed at: 21 days ago - Stars: 8 - Forks: 2

americocunhajr/ARBO

ARBO is a Matlab/C++ package for simulation and analysis of arbovirus nonlinear dynamics.

Language: MATLAB - Size: 103 MB - Last synced at: 3 days ago - Pushed at: 21 days ago - Stars: 5 - Forks: 1

safreita1/TIGER

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

Language: Python - Size: 22.6 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 158 - Forks: 26

SORMAS-Foundation/SORMAS-Project

SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.

Language: Java - Size: 268 MB - Last synced at: 15 days ago - Pushed at: 16 days ago - Stars: 304 - Forks: 146

EpiModel/EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Language: R - Size: 26.9 MB - Last synced at: 7 days ago - Pushed at: 10 days ago - Stars: 250 - Forks: 60

DemetersSon83/COVID-Agent-Based-Model

Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.

Language: Python - Size: 41 KB - Last synced at: 18 days ago - Pushed at: almost 3 years ago - Stars: 40 - Forks: 14

ngozzi/epydemix

epydemix, the ABC of epidemics

Language: Jupyter Notebook - Size: 211 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

BSoDium/epidemic-spreading-sim 📦

Epidemic spreading study using julia

Language: Jupyter Notebook - Size: 41.7 MB - Last synced at: about 2 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

MansoorehMontazerin/gnnvariants

[AAAI 2025] Official Code for "Dynamics-based Feature Augmentation of Graph Neural Networks for Variant Emergence Prediction"

Language: Python - Size: 46.3 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

sibyl-team/sib

Sibilla

Language: C++ - Size: 26.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 2

covid19-model/simulator

Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022

Language: Python - Size: 331 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 74 - Forks: 33

IztokD/MSSegregation-package

A macro package to analyse segregation of two-components mixtures depicted in a digital image.

Language: ImageJ Macro - Size: 19.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

edoardottt/COVID-19

Info/Data (global/italy) about COVID-19. PR welcome for other countries.

Language: Python - Size: 720 KB - Last synced at: 18 days ago - Pushed at: 6 months ago - Stars: 8 - Forks: 5

emdelponte/r4pde

R package developed as a companion to the book "R for Plant Disease Epidemiology" (R4PDE).

Language: R - Size: 4.68 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 5 - Forks: 1

nfidd/nfidd

Course on nowcasting and forecasting of infectious disease dynamcis

Language: Stan - Size: 23.8 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 10 - Forks: 4

wf-id/us-mpx

Tracking Monkeypox Virus (MPX) infections reported in the United States

Language: R - Size: 1.85 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 3

cognizant-ai-labs/covid-xprize

Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge

Language: Python - Size: 9.97 MB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 37 - Forks: 76

giopedro92/seird-model-exam

SEIRD model project for the Programmazione per la fisica exam.

Language: C++ - Size: 73.2 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

benmaier/tacoma

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.

Language: C++ - Size: 9.28 MB - Last synced at: 11 days ago - Pushed at: almost 5 years ago - Stars: 105 - Forks: 7

lo-hfk/epyestim

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

Language: Jupyter Notebook - Size: 528 KB - Last synced at: 15 days ago - Pushed at: over 4 years ago - Stars: 22 - Forks: 8

meliksahturker/NetGen

Network Generator framework that simulates daily interactions in an urban town

Language: Python - Size: 22.5 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1

haschka/SIER_multivariant_epidemic

An model for multivariant epidemics

Language: C - Size: 238 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

zafarali/disease-network-model

A Model To Simulate Diseases on a Network Structure

Language: Python - Size: 354 KB - Last synced at: about 1 month ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 2

lmiconsulting/cosasi

COntagion Simulation And Source Identification: a Python package for graph diffusion source inference

Language: Python - Size: 2.68 MB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 4

epiverse-trace/epi-training-kit

An e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbean

Language: R - Size: 1.64 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0

nwlandry/hypercontagion

Library for epidemics on hypergraphs

Language: Python - Size: 3.86 MB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 12 - Forks: 1

KryKis/seir_es

Computational model of epidemics (SEIR model)

Language: C - Size: 1.95 KB - Last synced at: 11 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

junhua/EPIC

EPIC: a large collection of over 30 million epidemic-related tweets

Size: 183 KB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 12 - Forks: 0

wf-id/nc-mpx

Tracking reported MPX cases in North Carolina

Language: Shell - Size: 16.9 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

wcota/dynSIS

Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.

Language: Fortran - Size: 1.51 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 9 - Forks: 2

knaticat/Epidemic-Simulator

A simple p5.js Epidemic Simulator

Language: JavaScript - Size: 1.06 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

Megospc/epidemic_simulator

Симулятор распространения эпидемии и конкуренции разных видов инфекций.

Language: JavaScript - Size: 1.01 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

jerr-it/SpreadSimulator

Epidemics simulation

Language: Go - Size: 3.75 MB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 20 - Forks: 0

seandavi/sars2pack

An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources

Language: R - Size: 993 MB - Last synced at: 21 days ago - Pushed at: almost 3 years ago - Stars: 59 - Forks: 14

JBris/sir-agent-based-modelling

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

Language: Jupyter Notebook - Size: 10.5 MB - Last synced at: 18 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 0

qinyichen/tie-decay-epidemic-threshold

Research on epidemic thresholds of infectious diseases on tie-decay networks.

Language: Python - Size: 120 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

QuanticPony/compartmental

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

Language: Python - Size: 2.33 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

MatteoM95/Network-Dynamics-and-Learning

Homework and exercises from course Network Dynamics and Learning

Language: Jupyter Notebook - Size: 7.07 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 6

jstockwin/EpiEstimApp

Source code for the EpiEstim app.

Language: R - Size: 57.9 MB - Last synced at: 7 days ago - Pushed at: almost 5 years ago - Stars: 31 - Forks: 11

b4shm3rlow/AI_System-Intelligent-Models

university course project of Intelligent Models: super spreaders in networks

Language: Jupyter Notebook - Size: 45 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

JohannesNakayama/EpidemicModel.jl

An agent-based model to test the effect of different social-psychological aspects on the spread of epidemics

Language: R - Size: 44.9 KB - Last synced at: 12 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

phononautomata/madrid

Code for SIR metapopulation model with perimeter lockdowns for Madrid, Spain

Language: Python - Size: 13.3 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

manumacc/epidemic-graph-simulation

Simulation of an epidemic on a random graph of choice according to discrete-time SIR and SIRV models and estimation of parameters by gradient descent

Language: Jupyter Notebook - Size: 344 KB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

RiegelGestr/multiplex_mobility_italy_municipalities

Multiplex Mobility Italy at municipality level and SIR Metapopulation simulation

Language: Julia - Size: 22.5 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

UT-IDDynamics/wepidemics

A Wiki on Epidemic Modeling

Language: Dockerfile - Size: 203 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

benmaier/GillEpi

Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.

Language: Python - Size: 36.1 KB - Last synced at: 7 months ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 0

lucasmccabe/contagion

Python package for node immunization and network contagion simulation

Language: Python - Size: 776 KB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

ngozzi/temporal-networks

Introduction to temporal networks and the activity driven framework with code

Language: Jupyter Notebook - Size: 5.08 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ContentMine/FutureTDM

Materials of FutureTDM project

Language: Jupyter Notebook - Size: 16 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 11 - Forks: 5

wcota/dynSIS-networkx

Networkx implementation of the SIS epidemic model for large and heterogeneous networks

Language: Python - Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 14 - Forks: 4

PetoLau/CoronaDash

COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools

Language: R - Size: 3.05 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 22 - Forks: 8

MachineLearningJournalClub/GAMELEON

Pretty GAMELEON : Pretty General Agent-based Model (for) Epidemiological (and) Logistical Enquiries On Networks

Language: Jupyter Notebook - Size: 39.4 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 2

imdevskp/mers_dataset_collection_cleaning

data extracted from https://www.who.int/emergencies/mers-cov/en/

Language: Jupyter Notebook - Size: 338 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

Luck19921/Covid19-App-Tracker

The project created for epidemic information of COVID-19(Wu Heng Coronavirus) in Taiwan or other countries.

Language: Swift - Size: 440 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

nicolaibba/covidsim

A quick simulator in Python to show the effects of social distancing during a pandemic

Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

pourmalek/CovidVisualizedCountry

Combine and visualize predictions of international periodically updated COVID-19 pandemic models for countries with subnational level estimates: Canada

Language: Stata - Size: 3.9 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

temp3rr0r/CellularAutomataEpidemicModels

Stochastic Cellular Automata epidemic models in Python with 2D simulations

Language: Python - Size: 127 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 10 - Forks: 6

wcota/dynSIS-py

Implementation of SIS epidemic model for large and heterogeneous networks

Language: Python - Size: 32.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 4

wcota/dynSIS-GA

Implementation of SIS epidemic model with a Gillespie Algorithm - NOT optimized

Language: Fortran - Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

madhurima-nath/epi_model 📦

Language: Jupyter Notebook - Size: 647 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

imdevskp/covid_19_jhu_data_web_scrap_and_cleaning

This repository contains data and code used to get and clean data from https://github.com/CSSEGISandData/COVID-19 and https://www.worldometers.info/coronavirus/

Language: Jupyter Notebook - Size: 123 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 91 - Forks: 94

csisc/EpidemicsRD

Studying the effect of infectious epidemics on scholarly research

Size: 359 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

alexandrumeterez/COVID19Ro

Visualization tool for the situation of the COVID-19 pandemic in Romania, with predictions for future numbers.

Language: CSS - Size: 134 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

tomcm39/adaptively_stacking_ensembles_for_infleunza_forecasting_with_incomplete_data

Language: TeX - Size: 185 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

anapdinizm/compartmental-models

A visual tool (HTML / Javascript) to interact with compartmental models like SIR and SEIR

Language: HTML - Size: 124 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

leo-pfeiffer/epi-sim

Repository for my MSc Thesis `A Web Application for Compartmental Network Models Illustrated Using COVID-19'

Language: Python - Size: 29.8 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

pennsignals/bayes-chime 📦

Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

Language: Jupyter Notebook - Size: 7.75 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 18

ChiaraVanderputten/NetworkDynamics

Repository about the projects in the course of network dynamics and learning at PoliTo

Language: Jupyter Notebook - Size: 12.9 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

TheMikerik/SIR-generator

The SIR model is a simple mathematical model of the evolution of epidemics. The output is a graph that shows an estimate of the evolution of the epidemic.

Language: C - Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

programandoconro/Simulaciones-de-epidemias

Simulaciones de epidemias 👾 en poblaciones con mezclas homogéneas 👪 utilizando modelos basados en agentes autónomos 🤖

Language: R - Size: 196 KB - Last synced at: 18 days ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 4

alexandrumeterez/abmcovid19

Agent based model for epidemics based on the SEIR system.

Language: JavaScript - Size: 46.9 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 5 - Forks: 0

robertjankowski/role-of-time-scales-epidemic-spreading

Role of time scales in the coupled epidemic-opinion dynamics on multiplex networks

Language: Jupyter Notebook - Size: 107 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

FeiGSSS/NEDMP

Official PyTorch implementation of Neural Enhanced Dynamic Message Passing in AISTATS 2022

Language: Jupyter Notebook - Size: 44.9 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 2

EcoDynIZW/Benhaiem_2018_CommsBio

"Slow recovery from a disease epidemic in the spotted hyena, a keystone social carnivore"

Language: R - Size: 1.75 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

GiulioRossetti/ndlib-rest

Network Diffusion Library REST Service

Language: Python - Size: 8.01 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 10 - Forks: 7

bhoov/JUNE-vis

Visualization for the JUNE epidemic and intervention simulation tool

Language: Vue - Size: 12.2 MB - Last synced at: 13 days ago - Pushed at: almost 4 years ago - Stars: 5 - Forks: 0

metawards/MetaWards Fork of chryswoods/MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

Language: Python - Size: 160 MB - Last synced at: 4 days ago - Pushed at: 9 months ago - Stars: 13 - Forks: 6

Kirscher/simulateur_epidemie

Construction d’un solveur d’EDO sur MATLAB et application à un simulateur de progression d’épidémie.

Language: MATLAB - Size: 1.81 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

UofUEpiBio/SHEPheRD

Repositories and projects related to the SHEPheRD CDC contract

Size: 51.8 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

geon0325/covid_segmentation

Source code for the PLOS ONE (2022) and epiDAMIK@KDD 2021 paper "Simple Epidemic Models with Segmentation can be Better than Complex Ones."

Language: Python - Size: 6.78 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 0

FeiGSSS/ELE

A python implementation of ELE method in paper "Abrupt phase transition of epidemic spreading in simplicial complexes", PRR 2020

Language: Python - Size: 56.6 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

OptimalLockdown/MobilitySEIRD-England

Language: Jupyter Notebook - Size: 37.6 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

OptimalLockdown/Covid19inEngland

Language: Makefile - Size: 11.6 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

Grupo-de-simulacion-con-automatas/CAsimulations-Modelacion-de-dinamicas-topologicas-en-la-propagacion-de-una-enfermedad-usando-CA

https://test.pypi.org/project/casimulation

Language: Jupyter Notebook - Size: 215 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

giacom0rovers1/pyndemic

Integrated tools for testing simple epidemic models over differently connected and clustered random networks

Language: Python - Size: 1.48 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

TavoGLC/COVID19-EpidemicCurves

Covid-19 pandemic epidemic curves analysis.

Language: Python - Size: 25.4 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Forcoa-NET/SirModelShowCase

SIR model example with visualization on Karate Club network.

Language: Jupyter Notebook - Size: 1.02 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

gerritgr/LumPy

Model Reduction of the Approximate Master Equation for Epidemic Processes on Complex Networks

Language: Python - Size: 85.9 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

MohamedHmini/D-PandiSIM

distributed pandemics simulator, uses the power of spark to generate huge bulks of contact-tracing data.

Language: Jupyter Notebook - Size: 2.22 MB - Last synced at: 6 days ago - Pushed at: about 4 years ago - Stars: 17 - Forks: 0

waleedalmutiry/EpiILMCT

Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics

Language: Fortran - Size: 463 KB - Last synced at: 25 days ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 2

seabbs/thepebblegame

The pebble game: A simple game that can be used to understand epidemics and vaccination

Language: R - Size: 49.8 KB - Last synced at: 6 days ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

Related Keywords
epidemics 125 covid-19 31 epidemiology 31 sir-model 20 epidemic-model 15 epidemic-simulations 15 python 15 covid 13 simulation 13 coronavirus 11 complex-networks 10 pandemic 8 covid19 8 sir 7 agent-based-modeling 7 infectious-diseases 7 network 6 networks 6 networkx 6 r 6 disease 5 markov-chain 5 data-science 5 coronavirus-tracking 4 jupyter-notebook 4 data-visualization 4 agent-based-simulation 4 markovian-processes 4 machine-learning 4 network-science 4 sars-cov-2 4 epidemiology-analysis 4 stochastic-processes 4 stochastic-simulation-algorithm 4 computational-physics 4 markovian-epidemic-processes 4 optimal-control 3 sis-model 3 graph 3 gillespie-algorithm 3 shiny 3 compartmental-model 3 cellular-automata 3 epidemic-modelling 3 epidemic 3 computational-epidemiology 3 abc 3 opinion-dynamics 3 mathematical-biology 3 simulations 3 modelling 3 rstats 3 covid19-data 3 javascript 3 julia 3 england 2 temporal-networks 2 graphs 2 disease-spread 2 seir-model 2 time-series-analysis 2 graph-neural-networks 2 sis 2 sirs 2 agent-based-model 2 disease-simulation 2 graph-algorithms 2 deterministic 2 assumptions 2 coronavirus-info 2 epidemiological-models 2 approximate-bayesian-computation 2 spread 2 virus 2 metapopulation 2 data-analysis 2 infectious-disease-models 2 forecasting 2 wardrop-equilibrium 2 simulator 2 random-graphs 2 monkeypox 2 artificial-intelligence 2 matlab 2 statistics 2 penn 2 data-mining 2 multiplex-networks 2 toronto 2 ode 2 interactive-visualizations 2 monte-carlo-simulation 2 mathematics 2 numpy 2 modeling 2 pandemics 2 go 2 golang 2 statistical-analysis 2 computational-biology 2