jandraor/preparedness

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fusion809/fusion809.github.io

Franklin-powered website.

Language: HTML - Size: 4.03 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

sedaradoykova/pomp_handover

Handover code for BDI Summer Studentship 2021. Contains code attepmting to adapt Dr Tom Crellen's difference-equation waning COVID-19 immunity transmission-dynamic model to the pomp framework with the ultimate goal of parameter estimation.

Size: 838 KB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

AshtonIzmev/covid-19-pandemic-simulation

"Life simulation" of a SEIR inspired model to better understand pandemic using python

Language: Python - Size: 2.48 MB - Last synced: 27 days ago - Pushed: about 3 years ago - Stars: 27 - Forks: 4

Aveek-Saha/CovidAnalysis

Analyzing the spread of the novel Coronavirus COVID-19

Language: Jupyter Notebook - Size: 43.2 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 0

Shakeri-Lab/COVID-SEIR

A stochastic epidemiological model that supplements the conventional reported cases with pooled samples from wastewater for assessing the overall SARS-CoV-2 burden at the community level.

Language: R - Size: 17.3 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 3 - Forks: 1

aprabaswara/Statistical-Programming-Task-2-Covid-and-the-hazards-of-opportunistic-sampling-Group-21

COVID and the Hazards of Opportunistic Sampling

Language: R - Size: 21.5 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

Taha-Rouabah/COVID-19

COVID-19 modeling

Language: Python - Size: 383 KB - Last synced: 3 days ago - Pushed: over 2 years ago - Stars: 5 - Forks: 2

adamhsparks/epicrop 📦

Simulation modelling of crop diseases using a Susceptible-Exposed-Infectious-Removed (SEIR) model in R

Language: R - Size: 10.2 MB - Last synced: about 2 months ago - Pushed: 6 months ago - Stars: 22 - Forks: 13

YiranJing/Coronavirus-Epidemic-COVID-19

👩🏻‍⚕️Covid-19 estimation and forecast using statistical model; 新型冠状病毒肺炎统计模型预测 (Jan 2020)

Language: Jupyter Notebook - Size: 45 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 243 - Forks: 69

yoavram-lab/EffectiveNPI

Repo for: Kohanovski, Obolski, Ram (2022) "Inferring the effective start dates of non-pharmaceutical interventions during COVID-19 outbreaks". IJID. doi:10.1016/j.ijid.2021.12.364

Language: Jupyter Notebook - Size: 103 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

TB-DevAcc/MVSEIQRD_Model

A simulation of the coronavirus pandemic in Germany based on the SEIR model.

Language: Jupyter Notebook - Size: 37.3 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

selcukorkmaz/genSEIR

Generalized SEIR modeling for COVID-19 outbreak

Language: R - Size: 499 KB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

akerkow/bush-mosquito-flight-simulator

This repository contains the model scripts for the Linkage of a compartment model for West-Nile virus with a flight simulator for vecor mosquitoes

Language: Python - Size: 827 KB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

CEIDatUGA/COVID-GA-model

Code for fitting and simulating a stochastic, mechanistic model of COVID-19 transmission in Georgia.

Language: HTML - Size: 3.16 GB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 2

jandraor/delays

R. Soc. Open Sci (2023)

Language: R - Size: 2.29 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

nnchung/SEIR-Model

Language: Python - Size: 18.6 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

muzammilmalik01/SIR-SEIR-Model

The SIR & SEIR model is a mathematical model used to describe the spread of infectious diseases. Source: ode_book

Language: Python - Size: 607 KB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

CheranMahalingam/COVID-19_Projections_SEIR_Model

A react-flask webscraping application to make real-time COVID-19 projections using an SEIR model with EC2 deployment instructions

Language: JavaScript - Size: 570 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

greenhandatsjtu/COVID-19-CA-SEIR

Simulation for spreading of COVID-19 using CA-SEIR model

Language: Python - Size: 1.22 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

jpmattern/seir-covid19

Language: Jupyter Notebook - Size: 12.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 13 - Forks: 6

Jeevesh28/SIR-Modelling-Covid-19

Models for the outbreak of infectious disease (Covid-19) into a susceptible population (Colleges) using standard epidemiological models (SIR, SEIR, SEIR with Control)

Language: Jupyter Notebook - Size: 21.5 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

GeoDS/Travel-Network-SEIR

a travel-network-based susceptible-exposed-infectious-removed (SEIR) mathematical compartmental model ODE system.

Language: MATLAB - Size: 1.17 MB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 2

pstarszyk/covid19_spread_model

experimentation with SEIR models on beginning of pandemic data

Language: Jupyter Notebook - Size: 3.71 MB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1

jandraor/SEIR_cohorts_calibration

Epidemics (2020)

Language: Stan - Size: 961 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

nejiko96/react-sir-like-model

SRI like model simulator

Language: JavaScript - Size: 6.32 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

jpcorb20/covid19-transmission-ukf

With this repository, I derive the time-dependent R0 coefficient of the COVID-19 with the Unscented Kalman Filter from the data gathered by John Hopkins assuming the SEIR model.

Language: Python - Size: 208 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 1

sscollis/sanseir

Solve a stochastic SEIR model for disease progression

Language: Fortran - Size: 4.41 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

mkhalai/Coronavirus-SEIR-model

Estimating SEIR model parameters for novel coronavirus in Hubei province, China.

Language: Jupyter Notebook - Size: 225 KB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

Gopal-Dahale/Distribution-and-Requirement-of-Medical-Resources-for-Covid-19-and-Factors-Affecting-Hospitalization

Predict admission to the ICU of confirmed cases & number of people who'll get infected and more.

Language: Jupyter Notebook - Size: 8.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 6 - Forks: 2

Quang-Vinh/covid-prediction

COVID-19 forecasting in Canada

Language: Jupyter Notebook - Size: 102 MB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 0

hugo1005/A-Model-Based-Approach-To-Assess-Epidemic-Risk

Dolan, H., Rastelli, R. A Model-Based Approach to Assess Epidemic Risk. Stat Biosci (2021). https://doi.org/10.1007/s12561-021-09329-z

Language: Jupyter Notebook - Size: 14.1 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 1

angad-cheema/SEIRcovidmodel

Quick extended SEIR model I used to attempt to predict COVID 19 spread in Minnesota in March 2020. Wasn't very accurate.

Language: Mathematica - Size: 303 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

rodosingh/SEIR-Modelling-of-COVID-19

Here we have taken Covid-19 data for Qatar from [Kaggle](https://www.kaggle.com/sudalairajkumar/novel-corona-virus-2019-dataset?select=covid_19_data.csv)

Language: Jupyter Notebook - Size: 2.3 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

timueh/PandemicModeling

Modeling pandemics subject to uncertainties

Language: Julia - Size: 633 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 4 - Forks: 1

sigeek/fitting-covid-19

Final project for the course "Modelli Matematici per la Biomedicina" at Politecnico di Torino, academic year 2020/2021

Language: Jupyter Notebook - Size: 33 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

liloheinrich/ModSim

Modeling and Simulation | Fall 2019 | Coursework

Language: HTML - Size: 37.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

rodralez/covid-19

Files for modelling COVID-19 virus

Language: MATLAB - Size: 2.12 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 2

sjanasek/seir-model

time-discrete seir-model for predicting covid-19 scenarios written in r language for my bachelor-thesis

Language: R - Size: 53.7 KB - Last synced: 5 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

MarieLanger/Interactive-SIRmodel-UI

Interactive program to plot SIR-model with various extensions.

Size: 168 KB - Last synced: 11 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

amilovanovikj/ModelingAndSimulation

Simulation of COVID spread in generated network using a SEIR model. View the code and simulations at:

Language: Jupyter Notebook - Size: 80.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

Ritwik-Bhaduri/SEIR_misclassification-Delhi

Understanding dynamics of COVID-19 in Delhi, India, using compartmental model that incorporates Testing bias and Misclassification.

Language: R - Size: 20.3 MB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

mtsokol/epidemic-modelling-workshop

An introduction to sensitivity analysis and 4D-Var data assimilation method in epidemic modelling setting

Language: Jupyter Notebook - Size: 438 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

ChiaraDiBonaventura/viral_marketing

Code to model a viral marketing campaign. Different simulations include SEIR Model and SEIR Model with two risk-groups as well as sensitivity analysis.

Language: Jupyter Notebook - Size: 795 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

nadlerBen/Covid19-ML-Project

Machine Learning project for the course Learning and Optimization 097209 @ Technion

Language: Python - Size: 6.7 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

WanjohiWanjohi/corona-spread-prediction

A repository that focuses on epidemiology modelling , with SEIR in particular as applied to the prediction of the spread COVID-19 virus in 2020 for the week of 10th August in Senegal

Language: Jupyter Notebook - Size: 745 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

tbuytaer/covid-19-website

Website to visualize COVID-19 data

Language: Vue - Size: 1.61 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

cch230/Duration-to-BEP-using-the-SEIR-Model-Infectious-Disease-Symptom-Model-

The period until the break-even point (BEP) using the SEIR (Infectious Disease Infection Model) was calculated.

Language: Python - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

aadilk96/Epidemiological-Estimating-of-COVID-19

Online dashboard used to track and forecast the spread of COVID-19.

Language: Python - Size: 137 KB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

tbuytaer/covid19 Fork of glouppe/covid19be

Models for calculating the spread of COVID-19

Language: Mathematica - Size: 29.9 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

konsim83/SIR-Models

Qt application to simulate infection spreading

Language: Python - Size: 278 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

8-vishal/Covid-19_Visualizer

Visualize the spread of COVID-19 epidemic with SEIR model.

Language: Python - Size: 287 KB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0