MI2YorkU/Rnaught

An R package and web application for estimating the basic reproduction number of infectious diseases.

Language: R - Size: 469 KB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

canmod/macpan2

Rebuilding https://github.com/mac-theobio/McMasterPandemic/

Language: R - Size: 41 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 2 - Forks: 0

HopkinsIDD/flepiMoP

The Flexible Epidemic Modeling Pipeline

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HopkinsIDD/flepiMoP_site Fork of mmistakes/minimal-mistakes

Website for the Flexible Epidemic Modeling Pipeline

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MarcelBeining/Dentate-Granule-Cell-Model

This detailed and robust compartmental model accompanies the manuscript Beining et al (2017): T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife

Language: MATLAB - Size: 97.7 MB - Last synced: 24 days ago - Pushed: over 4 years ago - Stars: 0 - Forks: 2

Gilbert-Sobremisana/https-doi.org-10.1016-j.jtice.2023.105076

Exploring characteristics of value-added production of anthraquinones in rhubarb via fermentation: Compartmental modelling and molecular docking analysis

Language: Python - Size: 13.7 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

nicoloverardo/epidemic-models

Compartmental models used to predict COVID-19 in Italy at provincial level

Language: R - Size: 2.44 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1

neurorishika/SEIR_QDPA-COVID_19

Code and Data for Gupta and Mohanta, et. al. (2020)

Language: Python - Size: 8.43 MB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

isottongloria/Life-data-epidemiology_hesitancy

Language: Jupyter Notebook - Size: 51.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ECheynet/SEIR

Generalized SEIR Epidemic Model (fitting and computation)

Language: MATLAB - Size: 122 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 82 - Forks: 44

MI2Labs/Rnaught

An R package and web app for estimating the basic reproduction number of infectious diseases.

Language: R - Size: 260 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

QuanticPony/compartmental

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

Language: Python - Size: 2.33 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

ADicksonLab/OpenRXN

A free, open-source tool for modeling chemical reaction networks in Python

Language: Python - Size: 46.9 KB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 11 - Forks: 2

Computer-Assisted-Clinical-Medicine/UMMPerfusion

Open Source Perfusion Analysis Plugin for OsiriX and Horos

Language: C++ - Size: 8.86 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 2

marialonsogar/COVID-Dynamics-Model-Comparison

Comparative study of the main techniques used for COVID modeling where the information available is infected curve. The objective is to identify those univariate techniques that produce the best results, analyzing whether the more complex models are really able to provide better predictions.

Language: Jupyter Notebook - Size: 36.1 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 2 - Forks: 1

pitkajuh/libreMCM

libreMCM (libre Multi Compartment Modelling) is a free software for carrying out deterministic and probabilistic modelling.

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LedaKatopodi/compartmental-models

COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.

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silpara/simulators

Simulators for Compartmental Models in Epidemiology

Language: Jupyter Notebook - Size: 640 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 32 - Forks: 38

stur86/compyrtment

A simple Python library for compartment models

Language: Jupyter Notebook - Size: 984 KB - Last synced: 29 days ago - Pushed: almost 3 years ago - Stars: 11 - Forks: 1

GoodrageSky/pinn-sir

A repository for my research project on PINN and Epidemiological Models

Language: Jupyter Notebook - Size: 165 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

ngdthanh2000/sir-model-for-covid19

A project contains simple programs written in R language to implement SIR Model - a compartmental model for modeling infectious diseases mathematically.

Language: R - Size: 514 KB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

mbkoltai/RSV-resurgence-model

Code for modeling RSV resurgence following contact restrictions

Language: R - Size: 451 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 6 - Forks: 0

epispot/epispot

A tool for modeling infectious diseases.

Language: Python - Size: 6 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 15 - Forks: 5

ekimetrics/pyepidemics

Open source epidemiological modeling in Python

Language: Jupyter Notebook - Size: 68.8 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 3

open-sir/open-sir

Python SIR-x model implementation

Language: Python - Size: 1.03 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 8

nicoloverardo/master-degree-thesis

Master thesis for the MSc in Data Science and Economics at Università degli Studi di Milano

Language: Jupyter Notebook - Size: 100 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

rmead7/Pharmacodynamics-and-Pharmacokinetics-of-Tumors

Pharmacodynamic and pharmacokinetic models that explore tumor and vasculature growth with anti-angiogenic agents and chemotherapeutic agents.

Language: Mathematica - Size: 1.15 MB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 1

MicheleDiSabato/NN_LearningOfRstar_COVID19

Machine learning algorithms for the calibration of epidemiological compartmental models: application to the Italian COVID-19 outbreaks in Italy and to the newly developed SUIHTER model.

Language: MATLAB - Size: 3.12 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

egruttadauria98/Modelling-the-US-fentanyl-epidemic

This repo contains the final work of the Simulation and Modeling class, part of the MSc in Data Science and Business Analytics @ Bocconi University

Language: Jupyter Notebook - Size: 4.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

henryxsong/Coral-Reefsearchers

Effects of Overfishing on Coral Reef Ecosystems

Language: TeX - Size: 92.3 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

bnb32/corona_modeling

Compartmental epidemiology models for COVID

Language: Python - Size: 2.78 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

antononcube/ECMMon-R

Epidemiologic Compartmental Modeling Monad in R

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epispot/manual

The official manual to the epispot package

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Ritwik-Bhaduri/SEIR_misclassification-Delhi

Understanding dynamics of COVID-19 in Delhi, India, using compartmental model that incorporates Testing bias and Misclassification.

Language: R - Size: 20.3 MB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

savannahwild/SIR_model_for_COVID-19

Using the SIR model to predict COVID-19 infection patterns. It is a compartmental model with the variables S, I and R for the number of susceptible, infectious and resistant individuals, respectively.

Language: Python - Size: 7.81 KB - Last synced: 4 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

MarcelBeining/T2N

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

Language: MATLAB - Size: 20.2 MB - Last synced: 24 days ago - Pushed: over 4 years ago - Stars: 8 - Forks: 3

Kevger/Epidemic-Simulations

Interactive epidemic simulations with compartmental models from SI to MSIER

Language: Vue - Size: 1.32 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

sepmein/cengceng

Infectious disease models implemented in python

Language: Python - Size: 48.8 KB - Last synced: about 1 month ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0

bquilty25/outbreaks-public

Language: HTML - Size: 544 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

outboxsingh/Non-Linear-Regression

Project on Compartment model.

Language: R - Size: 252 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

HouPoc/Curved-Free-Kick-Simulation

Analyze the trajectory of curved free kick in soccer matches with the compartment model

Language: C - Size: 48.2 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0