GitHub topics: epidemic-model

Repositories

CassandraDurr/EpiDynaX

EpiDynaX is a framework for discovering and modeling epidemic transition dynamics using machine learning methods.

Size: 3.91 KB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

lisphilar/covid19-sir

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

Language: Python - Size: 1.12 GB - Last synced at: 6 days ago - Pushed at: 14 days ago - Stars: 111 - Forks: 45

ccattuto/SIRtoy

Javascript implementation of an epidemic SIR model

Language: JavaScript - Size: 104 KB - Last synced at: 4 days ago - Pushed at: over 8 years ago - Stars: 21 - Forks: 5

ssi-dk/aedseo

Automated and Early Detection of Seasonal Epidemic Onset and Burden Levels

Language: R - Size: 21.1 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0

IMMIDD/GEMS

German Epidemic Microsimulation System developed in the OptimAgent-Project.

Language: Julia - Size: 26.1 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 5 - Forks: 2

Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS

Language: Jupyter Notebook - Size: 38.7 MB - Last synced at: 12 days ago - Pushed at: about 3 years ago - Stars: 374 - Forks: 90

catlewin/2025_Measels_in_SW_Kansas

This project analyzes graphs using the Ford-Fulkerson Algorithm to calculate the maximum flow with a specific case study: the 2025 Kansas measles outbreak.

Language: Python - Size: 167 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ryansmcgee/seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Language: Python - Size: 25.3 MB - Last synced at: 27 days ago - Pushed at: about 2 years ago - Stars: 668 - Forks: 220

KorkinLab/infection-dynamics

Modeling of infection dynamics with intelligent agents and geographical information.

Language: Java - Size: 12.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

Sean-Higgins/Epidemiology-Models

All of my epidemiological predictive models, including a basic SIR model and it's modifications. This repository also has some other fun models, including the SIInZD model for zombie outbreaks, and a model to predict the population growth of the Diclonious race from Elfen Lied. These models are written in C/C++ and use OpenMP with others in Rust.

Language: C++ - Size: 7.95 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

vargasrichards/multitype-xylella

small-scale stochastic SCIR epidemics with crypticity and control. parameterised to Xylella

Language: Python - Size: 0 Bytes - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

matsim-org/matsim-episim

Example project to get started with epidemic modelling in MATSim Episim

Language: Java - Size: 6.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 5

DataForScience/epidemik

Compartmental Epidemic Models in Python

Language: Python - Size: 538 KB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 14 - Forks: 2

JuliaEpi/MathepiaModels.jl

Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

Language: Julia - Size: 125 KB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 1

HuiResearch/epidemicTextMatch

天池大赛疫情文本挑战赛线上第三名方案分享

Language: Python - Size: 193 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 229 - Forks: 36

marcpinet/epidemic-modeling

🦠 Python script that simulates a pandemic using moving dots with tweakable parameters and then generates a graph according to obtained values. Made as part of a school project.

Language: Python - Size: 135 KB - Last synced at: about 1 month ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

AlgebraicJulia/Structured-Epidemic-Modeling

Results and software for our paper on structured epidemic modeling

Language: Jupyter Notebook - Size: 5.89 MB - Last synced at: about 7 hours ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 5

ivvaan/A-disease-spread-inhomogeneous-models

Meant to explore city and country level the disease (first for COVID-19) dynamics.

Language: Jupyter Notebook - Size: 16.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

sjijon/estimate-emergence-from-data

Code for reproducing the results from the preprint "Using early detection data to estimate the date of emergence of an epidemic outbreak".

Language: R - Size: 402 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 2

Yu-Group/covid19-severity-prediction

Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈

Language: Jupyter Notebook - Size: 3.87 GB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 228 - Forks: 92

giopedro92/seird-model-exam

SEIRD model project for the Programmazione per la fisica exam.

Language: C++ - Size: 73.2 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

haschka/SIER_multivariant_epidemic

An model for multivariant epidemics

Language: C - Size: 238 KB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

MollsReis/seir-model

SEIR epidemic model

Language: JavaScript - Size: 4.88 KB - Last synced at: 10 months ago - Pushed at: about 5 years ago - Stars: 4 - Forks: 1

scc-usc/ReCOVER-COVID-19

Data-driven COVID-19 forecasts and detection of unreported cases

Language: HTML - Size: 3.66 GB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 21 - Forks: 17

dental-informatics-org/sala-de-situacao-sus

Size: 46.9 KB - Last synced at: 11 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Whoneon/NetLogo-SIR

A heavy, slow and simple code to simulate a pandemic on NetLogo. Lots of improvement to be added soon!

Language: NetLogo - Size: 11.7 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

Emory-Melody/awesome-epidemic-modeling-papers

[KDD 2024] Papers about deep learning in epidemic modeling.

Size: 310 KB - Last synced at: 11 months ago - Pushed at: 12 months ago - Stars: 25 - Forks: 1

ECheynet/zombieInfectionModelling

Matlab code for the simulation of a zombie outbreak using a compartmental model

Language: MATLAB - Size: 119 KB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

brayvid/epidemic-simulator

Colab implementation of a SIR model of disease spread.

Language: Jupyter Notebook - Size: 5.25 MB - Last synced at: 4 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

chrisvoncsefalvay/differential-social-distancing-game

Statistical dynamics of social distancing in SARS-CoV-2 as a differential game

Language: Jupyter Notebook - Size: 1.14 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 1

Megospc/epidemic_simulator_4

Последняя версия симулятора распространения эпидемии и конкуренции разных видов инфекций.

Language: JavaScript - Size: 2.98 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

Megospc/epidemic_simulator_3

Симулятор распространения эпидемии и конкуренции разных видов инфекций. Версия 3.0. Добавлены события, которые могут внести сильные изменения в ход моделирования.

Language: JavaScript - Size: 2.02 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

Megospc/epidemic_simulator_2

Симулятор распространения эпидемии и конкуренции разных видов инфекций. Версия 2.0. Добавлены модификаторы условий (ландшафты).

Language: JavaScript - Size: 1.08 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

oliviergimenez/SIRcovid19

Explore strategies of social distancing on epidemic w/ SIR model and R - from Gandon, Lion, Day

Language: HTML - Size: 12.6 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

oliviergimenez/fitODEswithOpenBUGS

Illustrate how to fit ODEs to time-series data in OpenBUGS with R

Size: 7.1 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 2

JBris/sir-agent-based-modelling

Agent-based modelling of pandemics using the Susceptible, Infected, Recovered (SIR) framework.

Language: Jupyter Notebook - Size: 10.5 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

QuanticPony/compartmental

Vectored GPU based compartmental simulations. Easy to use. With some ABC (Approximate Bayesian Computation) utils

Language: Python - Size: 2.33 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ltungv/vgu-thesis-code

Implementation of a Covid-19 model using UDEs

Language: Julia - Size: 111 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

marija-iloska/gtpf-epidemiology

Particle Filter for SEIR models

Language: MATLAB - Size: 698 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

MatteoM95/Network-Dynamics-and-Learning

Homework and exercises from course Network Dynamics and Learning

Language: Jupyter Notebook - Size: 7.07 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 6

DataForScience/CoVID19

A Data Driven Approach to Understanding COVID-19 with NetworkX

Language: Jupyter Notebook - Size: 83.1 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1

nehalmuthu/Covid-Simulation-in-Federated-Environment

COVID prediction and simulation based on mobility data in federated environment

Language: Jupyter Notebook - Size: 4 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

Aveek-Saha/CovidAnalysis

Analyzing the spread of the novel Coronavirus COVID-19

Language: Jupyter Notebook - Size: 43.2 MB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0

yoavram/SanJose

Adaptive social contact rates induce complex dynamics during epidemics

Language: Jupyter Notebook - Size: 22.2 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

RushiVachhani/modelling-and-simulation

This repository contains the lab and the project done during the course of modelling and simulation

Language: MATLAB - Size: 2.96 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

GiveMePseudonyms/Epidemic-Sim

An agent-based model designed to model epidemics with varying degrees of infectivity, lethality, vaccination rates, mask-wearing, hand-washing. Written in Python. Started Oct 2022.

Language: Python - Size: 188 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

pratikunterwegs/Epidemics.jl

Julia package to model epidemic scenarios; a translation of the R(cpp) package {epidemics}.

Language: Julia - Size: 441 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

marcusaasjensen/airport-network-epidemic 📦

Old school project about modeling an epidemic in the context of the COVID-19 situation. I choose to simulate an epidemic inside an airport network.

Language: C# - Size: 6.08 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

harrydlr/SIS-epidemic-model

Study of SIS epidemic model - Complex networks

Language: Python - Size: 69.3 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ngozzi/temporal-networks

Introduction to temporal networks and the activity driven framework with code

Language: Jupyter Notebook - Size: 5.08 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

YiranJing/Coronavirus-Epidemic-COVID-19

👩🏻‍⚕️Covid-19 estimation and forecast using statistical model; 新型冠状病毒肺炎统计模型预测 (Jan 2020)

Language: Jupyter Notebook - Size: 45 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 243 - Forks: 69

KDDComplexNetworkAnalysis/UTLDR

UTLDR: an agent-based framework for modeling infectious diseases and public interventions

Language: Jupyter Notebook - Size: 1.21 GB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 1

petroniocandido/COVID19_AgentBasedSimulation

COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

Language: Python - Size: 7.79 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 72 - Forks: 38

pourmalek/CovidVisualizedGlobal

Combine and visualize predictions of international periodically updated COVID-19 pandemic models for the global level and six WHO regions

Language: Stata - Size: 1.96 GB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

peterbest52/mseir

Epidemic model for Covid-19 simulations across towns with case study in Connecticut

Language: Python - Size: 975 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

rokkuran/EpidemicSimulations.jl

Graph based epidemic simulations.

Language: Julia - Size: 5.48 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 1

UNGlobalPulse/UNGP-settlement-modelling

Agent-based model for simulating the spread of epidemics in refugee and IDP settlements. Adapted from the JUNE framework.

Language: Jupyter Notebook - Size: 5.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 1

lt-shy-john/covid19-vaccine-game-theory

Game theoretical modelling of COVID-19 vaccine adoption

Language: Python - Size: 2.94 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 2

Sandipan99/Spreading

Codes related to the project "Threshold-based epidemic dynamics in systems with memory"

Language: Java - Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

pourmalek/CovidVisualizedCountry

Combine and visualize predictions of international periodically updated COVID-19 pandemic models for countries with subnational level estimates: Canada

Language: Stata - Size: 3.9 GB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

EbonGit/Epidemic_Regression_Model

Neural network model based on an epidemic simulation, with the aim of finding the parameters to contain an outbreak.

Language: Jupyter Notebook - Size: 2.97 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

deepkashiwa20/MepoGNN

[ECMLPKDD22] MepoGNN: Metapopulation Epidemic Forecasting with Graph Neural Networks

Language: Python - Size: 4 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 2

mdebasrija/epidemicmodel

Learning the basics of epidemic modelling via compartmental models in Python

Language: Jupyter Notebook - Size: 12.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

madhurima-nath/epi_model 📦

Language: Jupyter Notebook - Size: 647 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1

kimakour/complex_networks_with_R

A repo containing some jupyter notebooks written in R.

Language: Jupyter Notebook - Size: 299 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

mbkoltai/RSV-resurgence-model

Code for modeling RSV resurgence following contact restrictions

Language: R - Size: 451 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 0

Pastells/TFG

Bachelor thesis - Mutating agents on complex networks

Language: Fortran - Size: 1.38 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

AdrianKlessa/SIRModel

A simple SIR model

Language: Python - Size: 40 KB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

andxblack/epi_inference

methods for inference using CTMC SIR models

Language: Julia - Size: 369 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

CRIS-YANGYQ/Epidemic-Model-Taidi

泰迪杯A题：基于 SEIDR 的疫情数据分析及精准防控研究 Research on epidemic data analysis and precise prevention and control based on SEIDR model

Language: Jupyter Notebook - Size: 20.1 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

leonardoLavagna/Epidemic-modelling 📦

simulations of various SIR-related models on a network.

Language: Jupyter Notebook - Size: 19.7 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

teobucci/computational-statistics

Project for the Computational Statistics course of the MSc in Mathematical Engineering @ Polimi (A.Y. 2022-2023).

Language: Jupyter Notebook - Size: 50.3 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

TheMikerik/SIR-generator

The SIR model is a simple mathematical model of the evolution of epidemics. The output is a graph that shows an estimate of the evolution of the epidemic.

Language: C - Size: 5.86 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

scb-school/epi-spread-visualizer

Tool to visualize disease spread based on input data.

Language: Python - Size: 3.27 MB - Last synced at: 16 days ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

chrism0dwk/wuhan

Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.

Language: R - Size: 1.25 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 74 - Forks: 20

GiulioRossetti/Social-Network-Analsysis-Laboratory

Docker container exposing a preconfigured python environment for Social Network Analysis

Language: Dockerfile - Size: 25.4 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 1

janmoelter/epidemic-transport-model

Code that has been used to perform the numerical simulations in C. Kuehn & J. Mölter. "The influence of a transport process on the epidemic threshold". J. Math. Biol. 85:62 (2022).

Language: Python - Size: 58.6 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

ashwanirathee/Epidemic-Simulator 📦

Simulator for SIR and SEIR model with cookbook for epidemiological models with a simple data tracker like vaccine tracker,data on deaths,cases,etc

Language: HTML - Size: 188 KB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 1

Song921012/OptEpiDeepL

Optimal epidemic control by deep learning techniques

Language: Julia - Size: 1.01 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

doscsy12/network_sci_analysis

Network data analysis using networkx, and gephi for visualisations.

Language: Jupyter Notebook - Size: 10.4 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

UNGlobalPulse/UNGP-contact-survey

Analysis of contact survey run in the Cox's Bazar refugee settlement

Language: Jupyter Notebook - Size: 3.63 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

QuanticPony/Analysis-of-effectiveness-of-lockdown-policies-for-desease-containment

Trabajo de Fin de Grado de Física 2022

Language: Python - Size: 15.4 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0

bhoov/JUNE-vis

Visualization for the JUNE epidemic and intervention simulation tool

Language: Vue - Size: 12.2 MB - Last synced at: 16 days ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0

metawards/MetaWards Fork of chryswoods/MetaWards

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

Language: Python - Size: 160 MB - Last synced at: 2 days ago - Pushed at: 11 months ago - Stars: 13 - Forks: 6

cja5553/socio-cultural-behavioral-traits-and-covid19

Cite as: Alba C, M Mittal "Socio-cultural behavioral traits in modeling the prediction of COVID-19 infection rates" Journal of Humanities and Applied Social Sciences Vol. 3 No. 5, pp. 339-355.

Size: 3.23 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ssiddhantsharma/Simple-SIR-Model

A basic SIR model to improve my understanding on the subject.

Language: Python - Size: 43.9 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

kirillzx/Agent-based-modeling

👨‍👩‍👦‍👦ABM research 👨‍👩‍👧‍👦

Language: Jupyter Notebook - Size: 36.2 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

funcional-health-analytics/covid19-analytics

Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.

Language: Jupyter Notebook - Size: 148 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 9