Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: epidemiology-analysis
Lauraquiroga/SEIRSModel
A SEIRS-NIMFA compartmental epidemiological model implementation adapted for the analysis of IoT network malware propagation
Language: Python - Size: 1.65 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 1 - Forks: 0
schongallam/firearms-and-MHP-public
Code for paper by Corbett, Schongalla, and Moen, about relationships between firearm ownership rates, mental health provider density, and firearm fatality rates.
Language: Rich Text Format - Size: 12.2 MB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 3 - Forks: 0
stopsack/rifttable
rifttable: Results Tables to Bridge the Rift Between Epidemiologists and Their Data
Language: R - Size: 1.16 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0
pzivich/zEpid
Epidemiology analysis package
Language: Python - Size: 10.9 MB - Last synced: 23 days ago - Pushed: about 1 year ago - Stars: 134 - Forks: 33
p-j-r/covid-19
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.
Language: Jupyter Notebook - Size: 20.9 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 13 - Forks: 8
ryansmcgee/seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Language: Python - Size: 25.3 MB - Last synced: about 2 months ago - Pushed: about 1 year ago - Stars: 650 - Forks: 215
elynch21/Public-Health-490KR-Epidemiologic-Data-Management-and-Analysis
Undergraduate Course Work from Public Health 490KR Epidemiologic Data Management & Analysis, Taught by Professor Katherine W. Reeves, PhD, MPH
Language: Stata - Size: 7.86 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
arinbasu/uc-shss-hlth460
This is a repository for the research methods course taught at the University of Canterbury. All study materials, exercises, readings, and data for analyses are kept here.
Size: 17.4 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0
AKU-CITRIC-Center-for-Bioinformatics/ncov
Genomic Epidemiology of SARS-CoV-2 in Pakistan
Size: 57.2 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 0
mminici/Influenza-Like-Illness-prediction
Influenza-like illness prediction model
Language: Jupyter Notebook - Size: 760 KB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 1
LinoSergio/COVID-19-mapping
Epidemiological project to visualize the status of COVID-19 in Sergipe (Brazil)
Language: R - Size: 573 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
mlaviolet/tidyepi
Functions for epidemiology analysis, including direct and indirect adjustment
Language: R - Size: 8.74 MB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
ashm97/Gaussian-Processes-for-Fitting-Epi-Curves
Fitting GPs to count data for non-linear regression of epi-curves
Language: Python - Size: 22.5 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0
lt-shy-john/covid19-vaccine-game-theory
Game theoretical modelling of COVID-19 vaccine adoption
Language: Python - Size: 2.94 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 5 - Forks: 2
JoeRothwell/EPIC-metabolomics
Scripts for analysis of metabolomics data relating to nutrition, health and disease in the EPIC study.
Language: R - Size: 214 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0
daniellybx/bioest_aplicada_r
Repositório para o grupo de estudos R voltado para o R na área da Saúde.
Language: R - Size: 8.35 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0
daniellybx/curso_r_asis
Curso Intermediário de R para análise de situação de saúde
Language: R - Size: 6.67 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0
doscsy12/network_sci_analysis
Network data analysis using networkx, and gephi for visualisations.
Language: Jupyter Notebook - Size: 10.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1
metawards/MetaWards Fork of chryswoods/MetaWards
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Language: Python - Size: 160 MB - Last synced: 5 days ago - Pushed: about 1 month ago - Stars: 13 - Forks: 6
jonathanstathakis/epidemiology-statistical-analysis-report
A short EDA project on the results of a fictional trial of a HbA1c2 treatment. Written in R with tidyverse, table1, and other packages.
Language: HTML - Size: 3.1 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
joao-med/syphilis_juizdefora
A ecological time series study about syphilis in the city of Juiz de Fora, in Brazil
Language: R - Size: 40 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
daniellybx/projeto_predicao_icsab
Projeto de machine learning para predição de taxas de internação por CSAB e clusterização para dimensionamento de ESF.
Language: R - Size: 1.95 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
Ethan-Genser/Virus_Simulator
Simulation to illustrate the way a viral pandemic spreads within a group of people as well as effectivity of different preventative measures
Language: JavaScript - Size: 257 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
JoeRothwell/Molecular-epi
Data analysis for colorectal cancer projects, mainly using metabolomics data.
Language: R - Size: 872 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 4 - Forks: 0
edoardottt/COVID-19
Info/Data (global/italy) about COVID-19. PR welcome for other countries.
Language: Python - Size: 716 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 8 - Forks: 5
BlankTiger/SIR_model
Educational tool that aims to provide an easy way of interacting with the basic epidemiological model SIR. Can also show how it would interact with the basic idea of vaccinations and an idea of losing immunity over time (second wave of infections).
Language: Python - Size: 40 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
BlankTiger/SEIRD_model
Educational tool used to visualize and solve the SEIRD epidemiological model with vaccination functionality. Allows the user to save results, parameters and more.
Language: Python - Size: 877 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0
daniellybx/curso_r_dados_temporais
Curso de nível intermediário aplicando o R e o RStudio ao cotidiano da Vigilância em Saúde para análise de dados temporais.
Language: R - Size: 186 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
metawards/rpkg
The MetaWards R package. This supports easy install of MetaWards R bindings from GitHub
Language: R - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
scab-unam/dam_COVID-19
Data analysis and modeling of the COVID-19 propagation dynamics
Language: Jupyter Notebook - Size: 43.6 MB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 1
tzxb018/covid_analysis
This python application takes the information from the spread of COVID-19 in the US and determines the effectiveness of the Stay At Home Orders for each state. To analyze the effectiveness, I used a cubic least square polynomial and the SIR model and compared these two models before and after date the stay at home orders were issued.
Language: Python - Size: 7.45 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0
nunesma/Health-analytics
Data analysis focusing on health problems
Language: R - Size: 570 KB - Last synced: 3 months ago - Pushed: about 3 years ago - Stars: 2 - Forks: 0
epicollect/epi-collect
🌏🌎🌍 Liberate Google Takeout location data for epidemiological research and local contact tracing https://epi-collect.org
Language: TypeScript - Size: 7.28 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 7 - Forks: 3
ecsendmail/AgentBasedModel
CovidSIM Agent-Based Model
Language: HTML - Size: 413 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1
ssiddhantsharma/simulate-epi
An epidemic stimulator, developed and built by brute force to learn more on biological systems.
Language: JavaScript - Size: 88.9 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 1 - Forks: 0
