jackmurphy2351/riskdiff

Calculate risk or prevalence differences using robust model fitting.

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bio2ds-ucm/bio2ds-ucm

Biomedicine Data Science and Biostatistics - UCM bio2ds-ucm · they/them This is the Github repo of the Biomedicine Data Science and Biostatistics research group at Complutense University

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UCLA-MDSH/ucla-mdsh.github.io

website for UCLA Master of Data Science in Health (MDSH) program

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LyonsZhang/CINEMA-Group

The CINEMA Group is a newly established research group focused on the intersection of clinical informatics, neuroimaging, and multiomics. Our goal is to develop innovative solutions for understanding human health and disease using advanced statistical and computational methods.

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yanmingyu92/py4csr

Language: Python - Size: 289 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0

USCbiostats/LAsBEST

Repository of USC's LA's BEST program. https://lasbest.usc.edu/

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wnarifin/wnarifin.github.io

wnarifin.github.io hosts my lectures, files and R codes.

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KechrisLab/kechrislab.github.io

Kechris Homepage

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BioFSharp/BioFSharp

Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.

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OpenLHS/Distrib_analysis

Distributed analysis

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ahgroup/billings-high-dose-heterologous-public 📦

Code and data associated with Billings et al., "High dose inactivated influenza vaccine inconsistently improves heterologous antibody responses in an elderly human cohort", JID 2025.

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YanuvS-Dev/Umethod

A unique method for pulling uniquely expressed genes from sc-RNA seq data

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LeandroD94/Papers

Papers in which I have been involved as data scientist. For the title, info and and/or the DOI of each one of them, check the corrispective "Paper_title_and_info" txt file

Language: R - Size: 108 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 3 - Forks: 0

KennethATaylor/mccount

Estimate Recurrent Event Burden with Competing Risk

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bradduthie/bradduthie.github.io

Personal website

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sbalci/ClinicoPathDescriptives

ClinicoPath jamovi module Descriptives

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stopsack/risks

risks: R package for estimating risk ratios and risk differences using regression

Language: R - Size: 7.83 MB - Last synced at: 22 days ago - Pushed at: 23 days ago - Stars: 6 - Forks: 1

g-whittington/Shiny-Stroke-Data

FAU's Summer Institute in Biostatistics and Data Science Group 3 Project

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SuryaVamsi-P/Patient-Survival-Prediction-ICU-Mortality-Modeling-R

Predicts ICU patient survival using clinical and demographic features with logistic regression, decision trees, LASSO, and AIC-based model selection in R. Designed for healthcare decision-making with real-world medical insights drawn from 92K+ patient records.

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ModelOriented/survex

Explainable Machine Learning in Survival Analysis

Language: R - Size: 309 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 112 - Forks: 10

ellessenne/rsimsum

Analysis of simulation studies including Monte Carlo error

Language: R - Size: 68.8 MB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 30 - Forks: 7

kfillman/Biostatistics_Homeworks

Code from UMN Biostatistics 1 (PUBH6450) and Biostatistics 2 (PUBH6451) homework

Language: R - Size: 6.08 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

KennethATaylor/mmequiv

Calculate Standardized Morphine Milligram Equivalent Doses

Language: R - Size: 1.79 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

keaven/gsDesign

Group sequential design for clinical trials

Language: R - Size: 289 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 51 - Forks: 13

Louiscrrn/applied-biostatistics-psoriasis-detection

Logistic regression model for psoriasis detection based on clinical and histopathological features. Includes data preprocessing, multicollinearity analysis, variable selection using VIF and Lasso, and comprehensive model assessment.

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MI2DataLab/survshap

SurvSHAP(t): Time-dependent explanations of machine learning survival models

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graemeleehickey/joineRML

R package for fitting joint models to time-to-event data and multivariate longitudinal data

Language: R - Size: 8.99 MB - Last synced at: 10 days ago - Pushed at: 5 months ago - Stars: 31 - Forks: 13

matthewlouisdavisBioStat/lgspline

A comprehensive software package for fitting smoothing splines and generalizations thereof

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elhajn/resume-projects

A collection of projects featured on my resume. Geared towards the bioinformatics/computational biology/biostatistics sector.

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JB-Statistical-Consulting/biostatistics

Biostatistics resources : reading list, RMarkdown notebooks, and more!

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DanuserLab/u-integrate

Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia

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karubiotools/AnssBin

A tutorials/tool-box for user-friendly bioinformatics and bio-statistics analyses

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simonguld/CellSegmentationTracker

A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy

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raghurama123/biostatistics

Repository of the course Biostatistics

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aysuvorov/medstats

Collection of scripts and modules for biostatistics and data science simple automation for research process.

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Papagiannopoulos/PhD_1st_research

1st PhD scientific research: The machine learning development on how i associated highly collerated big scaled molecular data with numerous traits

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selbouhaddani/OmicsPLS

R package for High dimensional data analysis and integration with O2PLS!

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ShixiangWang/Handbook_of_biostatistic_R

:green_book:handbook of biostatistic and R

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xabilopalf/GAMMANN-Vir

GAMM and ANN modelling for Viral Abundance Time Series

Language: R - Size: 13.7 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

gpaux/Mediana

Clinical Trial Simulations

Language: R - Size: 2.41 MB - Last synced at: about 15 hours ago - Pushed at: almost 2 years ago - Stars: 29 - Forks: 2

georgemelrose/Stroke-Prediction-Dataset-Practice

Utilising a publicly-available and small dataset of ~5K patients from Kaggle, to practice health data analysis.

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AntoineSoetewey/yll

R Package Hosted on CRAN to Compute Expected Years of Life Lost (YLL) and Average YLL. See https://CRAN.R-project.org/package=yll

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graemeleehickey/joineR

R package for fitting joint models to time-to-event and longitudinal data

Language: R - Size: 1.49 MB - Last synced at: about 2 months ago - Pushed at: 6 months ago - Stars: 17 - Forks: 9

hamzarahal/Biostatistics-with-python

Biostatistics with python

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laura-budurlean/Drug-Discovery-with-Python-and-Machine-Learning

Explore data collection, analysis, and machine learning for drug discovery. Create predictive models, perform EDA, and deploy as web apps.

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r0f1/sashelp

SAS code snippets

Language: SAS - Size: 87.9 KB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 39 - Forks: 11

maxbiostat/PhD_Thesis

My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018

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Gizamba/gizamba.github.io Fork of academicpages/academicpages.github.io

Academic Pages personal website draft

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raamana/confounds

Conquering confounds and covariates: methods, library and guidance

Language: Python - Size: 27.3 MB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 38 - Forks: 14

AriannaRigamonti/Biostatistics

This project analyzes a randomized phase III clinical trial evaluating the efficacy and safety of panitumumab combined with FOLFOX4 chemotherapy as a first-line treatment for metastatic colorectal cancer (mCRC). It includes survival analysis, adverse event assessment, and statistical modeling based on patient KRAS status.

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calikoOoOo/Introduction-to-Survival-Analysis-Presentation

Presented research on survival analysis to an audience of professors, graduate students, and other Women in Mathematics mentees.

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mikeroyal/Biostatistics-Guide

Biostatistics Guide

Size: 128 KB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 10 - Forks: 5

bradduthie/stats

Complete introductory statistics textbook with an emphasis on the biological & environmental sciences. Includes 26 chapters introducing key concepts for a foundational understanding of statistics and 9 complementary chapters of exercises with jamovi. Supplemental shiny apps illustrate book concepts. All code and datasets are freely available.

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FabbriniMarco/microbAIDeR

An ensemble of functions for easier and quicker preliminary microbiome analyses

Language: R - Size: 276 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

NoWon1/Bio-Inspired-Systems

Optimization and Evolutionary Algorithms in Python: This repository provides Python implementations of popular optimization and evolutionary algorithms, designed to tackle complex computational problems inspired by natural processes. These algorithms are widely used in various domains like optimization, machine learning, and engineering.

Language: Python - Size: 25.4 KB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 1

ekstroem/MESS

Miscellaneous Esoteric Statistical Scripts - an R package

Language: R - Size: 8.18 MB - Last synced at: 8 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 9

himelmallick/awesome_datascience_travel_grants

A curated list of early career data science student paper awards and travel grants.

Size: 5.86 KB - Last synced at: 8 days ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 0

asapostdocs/ASAPA_org

Test site for ASA Postdoc Network

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chupverse/survivalNET

R Package for modeling flexible net survival

Language: R - Size: 1.43 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 2

nripstein/Heart-Disease-Prediction

Heart Disease Prediction Machine Learning Project

Language: Jupyter Notebook - Size: 19.5 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 2

stracquadaniolab/pygna

A Python package for gene network analysis

Language: Python - Size: 3.12 MB - Last synced at: 25 days ago - Pushed at: about 3 years ago - Stars: 32 - Forks: 6

isglobal-cep/myphd

R package for "my" PhD.

Language: R - Size: 4.52 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

DrPaulValle/Modelling-Saccharomyces-cerevisiae-for-the-production-of-fermented-beverages-BEER-2024-

In this work, we formulate a mechanistic model consisting of three first-order Ordinary Differential Equations (ODEs) to describe ethanol production for mezcal by the Saccharomyces cerevisiae yeast using glucose and fructose as substrates.

Language: Python - Size: 839 KB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

MegaroboData/mglab

Mega Data Center

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ashleyduche/Format_ttest_summary

R function performing independent t-tests (Student’s or Welch’s) on grouped data, generating a detailed table with means, standard deviations, p-values, 95% confidence intervals, and significance codes.

Language: R - Size: 10.7 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

12danielLL/Neurogenomics_Project

This project focuses on analyzing sequencing data to understand molecular mechanisms of neurological diseases and predict the effectiveness of immunotherapy in breast cancer patients. It integrates Python and R scripts for data processing, statistical analysis, and visualization, alongside a comprehensive report detailing methods and findings.

Language: Jupyter Notebook - Size: 2.7 MB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

ma-riviere/ShinyQPCR

Shiny app for exploring QPCR data

Language: R - Size: 1.04 MB - Last synced at: 12 days ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

azminewasi/CADGL

Data and code of CADGL: Context-Aware Deep Graph Learning for Predicting Drug-Drug Interactions

Language: Python - Size: 6.46 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

nhejazi/biotmle

:package: :microscope: R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery

Language: R - Size: 120 MB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 2

stats9/R_Fancy

In this repository, software applications in simulation and visualization for various applications are presented with interesting examples.

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Capstone-24-25/vignette-cnn

CNN brain tumor image classification in Python

Language: Jupyter Notebook - Size: 446 MB - Last synced at: 28 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

vubiostat/ps

Power and Sample Size Calculation

Language: Visual Basic 6.0 - Size: 56.5 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 14 - Forks: 3

FinnishCancerRegistry/directadjusting

Compute estimates of weighted averages with confidence intervals.

Language: R - Size: 67.4 KB - Last synced at: 3 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

aldojacopovirno/HybridHeartClassifier

HybridHeartClassifier is an advanced R-based framework for heart disease classification and prediction, integrating statistical and machine learning approaches. This hybrid model combines ordinal regression with XGBoost for accurate classification and severity prediction, while offering extensive ROC analysis and statistical testing.

Language: R - Size: 591 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0

christinehou11/christinehou11.github.io

Personal website for Christine Hou

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stablemarkets/BSP_DTR

Companion code for the following paper: https://doi.org/10.1093/biostatistics/kxad035

Language: R - Size: 404 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

dadosdelaplace/dadosdelaplace

About me: mathematician, PhD Stats, Assistant Professor and scicomm

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JasonMohabir/eeggo

Probabilistic graphical modeling of gene expression modulation by CRISPR perturbation

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adamkurth/understanding-series

This is a series of subrepos where I explore theoretical and practical concepts, algorithms, and techniques used in statistics and machine learning.

Language: Jupyter Notebook - Size: 22.9 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

ben-laufer/DMRichR

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

Language: R - Size: 4.62 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 39 - Forks: 23

ahgroup/billings-patient-reported-symptom-data-public 📦

Code to accompany "Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting" by Billings et al, JABFM 2023

Language: R - Size: 21.6 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

tlverse/tlverse-handbook

🎯 :closed_book: Targeted Learning in R: A Causal Data Science Handbook

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DrPaulValle/Bioestadistica-para-el-ajuste-de-datos-experimentales

Estimación de tasas de liberación de fármaco en hidrogeles

Size: 979 KB - Last synced at: 2 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

deprodas/Covid19Antibody-Project

Codes to support the following peer-reviewed original research — https://doi.org/10.1016/j.heliyon.2023.e16349

Language: R - Size: 620 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

brashonf/brashonf

Size: 17.6 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

ferenci-tamas/FerenciTamas_BevezetesABiostatisztikaba

Ferenci Tamás: Bevezetés a biostatisztikába (jegyzet).

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hikarimusic/BIOSTATS

An Intuitive App for Statistical Analysis

Language: Python - Size: 43.1 MB - Last synced at: 21 days ago - Pushed at: over 1 year ago - Stars: 7 - Forks: 2

dvklopfenstein/goatools_simulation

Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations

Language: Python - Size: 92.4 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 3 - Forks: 1

filippob/bioinformatics_and_biostatistics_training

Language: HTML - Size: 8.85 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

alitermos/Differential-expression-analysis_GEO2R

A systematic approach in using GEO2R for investigating gene expression differences between a low-metastatic group and the highly metastatic MDA-MB-231 (TNBC) human breast cancer cell lines.

Language: R - Size: 7.75 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

nasif-raihan/BioMetaGenie

BioMetaGenie - a wrapper toolkit

Language: Python - Size: 65.4 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0

sbwiecko/intuitive_biostatistics

This repository contains a companion guide to Harvey Motulsky's Intuitive Biostatistics, 4th edition. The guide is designed to enhance understanding of the concepts explained in the book by providing practical examples and additional studies in a Jupyter-book format. (work in progress)

Language: Jupyter Notebook - Size: 30.5 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 1

kyegomez/Chai-1

An free and open source community implementation of Chai-1 in PyTorch

Language: Python - Size: 2.16 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0

jajohnso29/jajohnso29

My professional repository of project and publication data files in computational biology and data science.

Size: 104 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

lebinary/genome-browser

Genome browser to visualize and analyze genomic data

Language: JavaScript - Size: 2.37 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 2

DrPaulValle/Saccharomyces-cerevisiae-modelling-and-nonlinear-regression-with-normalized-data

Mathematical modeling and fitting by non-linear regression to experimental data in an alcoholic fermentation by the Saccharomyces cerevisiae yeast

Size: 260 KB - Last synced at: 2 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

gabrielgraciano/Garu_Estatistica

Repositório Pibiti - Garu Estatística

Language: R - Size: 9.49 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

ydavidchen/hrd_tnbc

Bioinformatic, statistical & ML analysis of Homologous Recombination Deficiency in triple-negative breast cancer

Language: R - Size: 68.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

raamana/missingdata

missing data handing: visualize and impute

Language: Python - Size: 1.52 MB - Last synced at: 2 days ago - Pushed at: almost 6 years ago - Stars: 18 - Forks: 1

kaz-yos/mw

Simulation scripts for matching weights in three-group studies (Epidemiology 2017)

Language: HTML - Size: 76.3 MB - Last synced at: 4 months ago - Pushed at: over 8 years ago - Stars: 6 - Forks: 3