CompEvol/beast2

Bayesian Evolutionary Analysis by Sampling Trees

Language: Java - Size: 93.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 229 - Forks: 82

TuringLang/Turing.jl

Bayesian inference with probabilistic programming.

Language: Julia - Size: 32.5 MB - Last synced: about 5 hours ago - Pushed: about 10 hours ago - Stars: 1,969 - Forks: 213

nakatsuma/probability_and_statistics

Course materials for PROBABILITY AND STATISTICS A/B

Language: Jupyter Notebook - Size: 43.5 MB - Last synced: about 5 hours ago - Pushed: about 19 hours ago - Stars: 15 - Forks: 13

aidanmrli/montecarlo

A modular high-level library for running high-dimensional Metropolis algorithms across a variety of scaling and tempering conditions.

Language: Python - Size: 3.68 MB - Last synced: about 15 hours ago - Pushed: about 20 hours ago - Stars: 0 - Forks: 0

pyro-ppl/numpyro

Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.

Language: Python - Size: 51.6 MB - Last synced: about 14 hours ago - Pushed: 1 day ago - Stars: 2,046 - Forks: 219

mrtkp9993/bayesciistatistik

Bayesci istatistiğe giriş.

Language: HTML - Size: 240 KB - Last synced: about 23 hours ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

kajyuuen/zero-mcmc-python

「ゼロからできるMCMC」をPythonで実装するリポジトリ

Language: Jupyter Notebook - Size: 451 KB - Last synced: about 23 hours ago - Pushed: over 3 years ago - Stars: 3 - Forks: 0

Julia-Tempering/Pigeons.jl

Distributed and parallel sampling from intractable distributions

Language: Julia - Size: 92.6 MB - Last synced: about 6 hours ago - Pushed: 1 day ago - Stars: 72 - Forks: 9

dfm/emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

Language: Python - Size: 32.8 MB - Last synced: about 9 hours ago - Pushed: 1 day ago - Stars: 1,424 - Forks: 430

owlbarn/owl

Owl - OCaml Scientific Computing @ https://ocaml.xyz

Language: OCaml - Size: 26.6 MB - Last synced: about 19 hours ago - Pushed: 1 day ago - Stars: 1,179 - Forks: 119

mxgmn/ConvChain

Bitmap generation from a single example with convolutions and MCMC

Language: C# - Size: 1.54 MB - Last synced: 1 day ago - Pushed: almost 2 years ago - Stars: 730 - Forks: 48

xgarrido/cobaya_utilities

A set of tools to deal with cobaya MCMC

Language: Python - Size: 3.35 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

mggg/GerryChain

Use MCMC to analyze districting plans and gerrymanders

Language: Python - Size: 134 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 128 - Forks: 71

exoplanet-dev/exoplanet

Fast & scalable MCMC for all your exoplanet needs!

Language: Python - Size: 14.8 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 200 - Forks: 54

stephaneguindon/phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

Language: C - Size: 26.6 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 166 - Forks: 60

tomicapretto/shiny-hmc

A Shiny app to help people learn (and play with) Hamiltonian Monte Carlo

Language: R - Size: 1.62 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 3 - Forks: 0

StanJulia/Stan.jl

Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.

Language: Julia - Size: 50.2 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 209 - Forks: 31

xqding/AIWAE

(AIWAE) Improving importance weighted auto-encoders with annealed importance sampling

Language: Python - Size: 20.5 KB - Last synced: 6 days ago - Pushed: almost 5 years ago - Stars: 7 - Forks: 2

TuringLang/TuringGLM.jl

Bayesian Generalized Linear models using `@formula` syntax.

Language: Julia - Size: 73.5 MB - Last synced: about 23 hours ago - Pushed: 6 days ago - Stars: 61 - Forks: 7

Wytamma/beastiary

Real time and remote MCMC trace monitoring with BEASTIARY.

Language: Vue - Size: 54.2 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 16 - Forks: 2

synesenom/ran

Library for generating various random variables

Language: JavaScript - Size: 27.3 MB - Last synced: 19 days ago - Pushed: 7 months ago - Stars: 13 - Forks: 4

StatisticalRethinkingJulia/StatisticalRethinking.jl

Julia package with selected functions in the R package `rethinking`. Used in the SR2... projects.

Language: Julia - Size: 1.23 GB - Last synced: 3 days ago - Pushed: 2 months ago - Stars: 383 - Forks: 33

handley-lab/anesthetic

Nested Sampling post-processing and plotting

Language: Python - Size: 8.36 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 54 - Forks: 15

dpohanlon/congenial-octo-fiesta

Parallel Goodman & Weare MCMC sampling on the Graphcore IPU

Language: C++ - Size: 3.91 KB - Last synced: 9 days ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

samuelleach/miramare

Miramare healpix analysis tools and a composable maximum likelihood component separation technique.

Language: FORTRAN - Size: 922 KB - Last synced: 9 days ago - Pushed: almost 10 years ago - Stars: 2 - Forks: 0

Bisaloo/mcmcensemble Fork of SandaD/MCMCEnsembleSampler

R Package Providing Ensemble Sampler for Affine-Invariant MCMC

Language: R - Size: 31.1 MB - Last synced: about 6 hours ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

beekill95/numpyro-doing-bayesian

My implementation of John K. Kruschke's Doing Bayesian Data Analysis 2nd edition using Python and Numpyro.

Language: Python - Size: 190 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 6 - Forks: 1

wataruhashimoto52/pytorch_examples

PyTorch & Pyro Examples for Natural Language Processing and Bayesian Inference.

Language: Python - Size: 2.93 KB - Last synced: 10 days ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

wataruhashimoto52/Edward-models

Deep Bayesian Modelling using Edward & Tensorflow

Language: Jupyter Notebook - Size: 565 KB - Last synced: 10 days ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

nabilalibou/brain_source_localization

Localization of brain sources measured by EEG using 3 approaches: Gibbs sampler (Markov chain Monte Carlo algorithm), Minimum Norm Estimates (MNE) and Source Imaging based on Structured Sparsity (SISSY)

Language: MATLAB - Size: 17.3 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 1 - Forks: 0

bat/BAT.jl

A Bayesian Analysis Toolkit in Julia

Language: Julia - Size: 136 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 193 - Forks: 31

GeorgeEfstathiadis/Stochastic-Epidemic-Modelling

Stochastic Epidemic Modelling algorithms

Language: Python - Size: 65.4 KB - Last synced: 10 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

NumCosmo/NumCosmo

NumCosmo main code

Language: C - Size: 164 MB - Last synced: 1 day ago - Pushed: 8 days ago - Stars: 43 - Forks: 17

nimble-dev/nimble

The base NIMBLE package for R

Language: C++ - Size: 65 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 146 - Forks: 21

PrayagS/Seriation-in-Paleontological-Data-using-MCMC

Python implementation of the research paper with the same title published in the PLOS Computational Biology journal. Link to the paper: https://doi.org/10.1371/journal.pcbi.0020006

Language: C - Size: 5.05 MB - Last synced: 13 days ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 2

kazewong/flowMC

Normalizing-flow enhanced sampling package for probabilistic inference in Jax

Language: Python - Size: 21.7 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 162 - Forks: 18

vortex-exoplanet/VIP

VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.

Language: Python - Size: 372 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 69 - Forks: 55

knottwill/Bayesian-NUTS

Bayesian inference using the No-U-Turn sampler.

Language: Python - Size: 1.87 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

DOI-USGS/geobipy

Geophysical Bayesian Inference in Python. Docs:

Language: Python - Size: 231 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 77 - Forks: 19

avehtari/BDA_py_demos

Bayesian Data Analysis demos for Python

Language: Jupyter Notebook - Size: 12.2 MB - Last synced: 15 days ago - Pushed: 8 months ago - Stars: 970 - Forks: 296

cdslaborg/paramonte

ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.

Language: Fortran - Size: 47.7 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 236 - Forks: 30

pymc-devs/pymc

Bayesian Modeling and Probabilistic Programming in Python

Language: Python - Size: 508 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 8,135 - Forks: 1,921

thiery-lab/manifold-mcmc-for-diffusions

Code accompanying the paper 'Manifold MCMC methods for Bayesian inference in a wide class of diffusion models'

Language: Jupyter Notebook - Size: 12 MB - Last synced: 15 days ago - Pushed: 9 months ago - Stars: 10 - Forks: 3

TuringLang/AdvancedHMC.jl

Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms

Language: Jupyter Notebook - Size: 3.58 MB - Last synced: 13 days ago - Pushed: 5 months ago - Stars: 218 - Forks: 39

englianhu/binary.com-interview-question

次元期权应征面试题范例。

Language: HTML - Size: 10.9 GB - Last synced: 17 days ago - Pushed: 18 days ago - Stars: 57 - Forks: 30

mjvakili/gambly

Searching for galaxy-assembly bias in the SDSS data

Language: Python - Size: 3.63 MB - Last synced: 16 days ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0

TuringLang/AdvancedMH.jl

Robust implementation for random-walk Metropolis-Hastings algorithms

Language: Julia - Size: 366 KB - Last synced: 17 days ago - Pushed: 3 months ago - Stars: 83 - Forks: 17

CraigKelly/grample

Sampling for Probabilistic Graphical Models

Language: Go - Size: 6.11 MB - Last synced: 17 days ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

cnosa/Tesis-

Cuadernos introductorios

Language: Jupyter Notebook - Size: 49.9 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 1 - Forks: 0

nftqcd/fthmc

Flowed HMC for Lattice Gauge Theory

Language: Jupyter Notebook - Size: 172 MB - Last synced: 1 day ago - Pushed: over 2 years ago - Stars: 7 - Forks: 2

laura-dangelo/bpr

R package 'bpr' to perform posterior inference for Bayesian Poisson regression

Language: R - Size: 435 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

teddygroves/bibat

A batteries-included template for Bayesian data analysis projects

Language: HTML - Size: 37.2 MB - Last synced: 19 days ago - Pushed: 23 days ago - Stars: 17 - Forks: 2

SModelS/protomodels

The code for artificial protomodelling, https://arxiv.org/abs/2012.12246

Language: Jupyter Notebook - Size: 315 MB - Last synced: 20 days ago - Pushed: 22 days ago - Stars: 3 - Forks: 1

stan-dev/posterior

The posterior R package

Language: R - Size: 3.75 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 160 - Forks: 21

minaskar/zeus

⚡️ zeus: Lightning Fast MCMC ⚡️

Language: Python - Size: 197 MB - Last synced: 18 days ago - Pushed: 2 months ago - Stars: 217 - Forks: 34

beast-dev/beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

Language: Java - Size: 152 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 176 - Forks: 69

metrumresearchgroup/Torsten

library of C++ functions that support applications of Stan in Pharmacometrics

Language: C++ - Size: 704 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 50 - Forks: 11

matt-graham/mici

Manifold Markov chain Monte Carlo methods in Python

Language: Python - Size: 22.5 MB - Last synced: 16 days ago - Pushed: 9 months ago - Stars: 209 - Forks: 28

rhayes777/PyAutoFit

PyAutoFit: Classy Probabilistic Programming

Language: Python - Size: 25.5 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 56 - Forks: 12

patrikeh/go-topics

Latent Dirichlet Allocation

Language: Go - Size: 3.78 MB - Last synced: 17 days ago - Pushed: over 2 years ago - Stars: 30 - Forks: 5

emdemor/cov19

Modelling epidemic curve with SIRD model.

Language: Python - Size: 35 MB - Last synced: 5 days ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

NREL/EvoProtGrad

Directed evolution of proteins in sequence space with gradients

Language: Jupyter Notebook - Size: 9.66 MB - Last synced: 19 days ago - Pushed: 19 days ago - Stars: 34 - Forks: 4

CarolMoore19/Business-Self-Sanctioning-of-Russia

Bayesian Machine Learning with PYMC3. Data from the Kyiv School of Economics.

Language: Jupyter Notebook - Size: 7.51 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 1 - Forks: 0

stan-dev/rstan

RStan, the R interface to Stan

Language: R - Size: 190 MB - Last synced: 19 days ago - Pushed: about 1 month ago - Stars: 1,001 - Forks: 262

stan-dev/cmdstanr

CmdStanR: the R interface to CmdStan

Language: R - Size: 25.4 MB - Last synced: 19 days ago - Pushed: 22 days ago - Stars: 132 - Forks: 59

Li-Yangyang/LOTUS

Fast tool for 1D Non-LTE stellar parameter determination via Equivalent Width method

Language: Python - Size: 31.1 MB - Last synced: 4 days ago - Pushed: over 1 year ago - Stars: 9 - Forks: 1

pcubillos/mc3

Python MCMC Sampler

Language: Python - Size: 11.5 MB - Last synced: 22 days ago - Pushed: 23 days ago - Stars: 31 - Forks: 11

StatisticalRethinkingJulia/SR2TuringPluto.jl

StatisticalRethinking notebook project using Turing and Pluto notebooks (derived from Max Lapan's Jupyter project)

Language: Julia - Size: 2.21 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 95 - Forks: 20

mattiasvillani/BayesLearnCourse

Bayesian Learning course at Stockholm University

Language: PostScript - Size: 155 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 139 - Forks: 31

4ment/skyplotr

Language: R - Size: 712 KB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

nitingarg1000/Variational-Inference-and-MCMC

Language: R - Size: 3.74 MB - Last synced: 23 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

ArkaB-DS/BayesProj

This repo contains the codes, images, report and slides for the project of the course - `MTH535A: An Introduction To Bayesian Analysis` at IIT Kanpur during the academic year 2022-2023.

Language: R - Size: 36.7 MB - Last synced: 23 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

choderalab/openmmtools

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

Language: Python - Size: 32.8 MB - Last synced: 19 days ago - Pushed: 2 months ago - Stars: 233 - Forks: 75

nahomneg/modelling-spread-COVID-19-Ethiopia

This project quantifies the Impact of socio-political incidents and measures taken by the gov't on the spread of COVID-19 in Ethiopia

Language: Jupyter Notebook - Size: 690 KB - Last synced: 25 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

stivalaa/ALAAMEE

Autologistic Actor Attribute Model (ALAAM) parameter estimation, simulation, and goodness-of-fit

Language: Python - Size: 9.16 MB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 21 - Forks: 2

fweber144/shinybrms

An R package providing a GUI ('shiny' app) for the R package 'brms'.

Language: R - Size: 28.8 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 10 - Forks: 1

stan-dev/shinystan

shinystan R package and ShinyStan GUI

Language: R - Size: 32.9 MB - Last synced: 19 days ago - Pushed: over 1 year ago - Stars: 194 - Forks: 51

stan-dev/bayesplot

bayesplot R package for plotting Bayesian models

Language: R - Size: 341 MB - Last synced: 19 days ago - Pushed: 3 months ago - Stars: 414 - Forks: 80

amatsu-hoshi/SphericalHMC

A pytorch implementation of SHMC algorithm in the paper Spherical Hamiltonian Monte Carlo for Constrained Target Distributions

Language: Python - Size: 15.6 KB - Last synced: 28 days ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

TuringLang/MCMCDiagnosticTools.jl

Language: Julia - Size: 758 KB - Last synced: about 5 hours ago - Pushed: 1 day ago - Stars: 19 - Forks: 6

jangevaare/Pathogen.jl

Simulation, visualization, and inference of individual level infectious disease models with Julia

Language: Julia - Size: 17.7 MB - Last synced: 3 days ago - Pushed: over 1 year ago - Stars: 71 - Forks: 10

franzmohr/bvartools

Functions for Bayesian inference of vector autoregressive and vector error correction models

Language: R - Size: 31.1 MB - Last synced: 29 days ago - Pushed: 4 months ago - Stars: 29 - Forks: 11

Starfish-develop/Starfish

Tools for Flexible Spectroscopic Inference

Language: Python - Size: 296 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 66 - Forks: 22

thiery-lab/manifold_lifting

Accompanying code for 'Manifold lifting: scaling MCMC to the vanishing noise regime'

Language: Jupyter Notebook - Size: 6.18 MB - Last synced: 14 days ago - Pushed: 9 months ago - Stars: 7 - Forks: 0

hongbo-yao/BayesMTGDS

Trans-dimensional Bayesian joint inversion of magnetotelluric and geomagnetic depth sounding responses to constrain mantle electrical discontinuities

Language: C++ - Size: 1.44 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 7 - Forks: 5

dm13450/dirichletprocess

Build dirichletprocess objects for data analysis

Language: R - Size: 10.1 MB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 55 - Forks: 14

mosew/tac-research

Ph.D. research on transdermal alcohol content

Language: Matlab - Size: 177 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

florianhartig/BayesianTools

General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Language: R - Size: 3.85 MB - Last synced: 15 days ago - Pushed: 3 months ago - Stars: 112 - Forks: 29

kevinlacaille/Galaxy-Disc-Fitting

Creating and fitting galaxy disc profiles

Language: Python - Size: 20.5 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1

mspronesti/advanced-statistical-inference

Notebooks for Advanced Statistical Inference(ASI) course at EURECOM

Language: Jupyter Notebook - Size: 7.42 MB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 5 - Forks: 1

salleuska/fastCPPP

Supplementary code for the paper "Computational methods for fast Bayesian hierarchical model assessment via calibrated posterior p-values."

Language: HTML - Size: 61.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0

posterior/loom Fork of priorknowledge/loom

A streaming cross-cat inference engine

Language: C++ - Size: 6.39 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 19 - Forks: 10

CompEvol/sampled-ancestors

This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

Language: Java - Size: 4.46 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 8 - Forks: 10

cmbant/getdist

MCMC sample analysis, kernel densities, plotting, and GUI

Language: Python - Size: 49.8 MB - Last synced: 18 days ago - Pushed: 20 days ago - Stars: 118 - Forks: 50

cbg-ethz/BnpC

Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

Language: Python - Size: 200 KB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 17 - Forks: 4

prmiles/pymcmcstat

Python implementation of MATLAB toolbox "mcmcstat"

Language: Jupyter Notebook - Size: 9.06 MB - Last synced: 23 days ago - Pushed: over 1 year ago - Stars: 65 - Forks: 10

mschauer/Bridge.jl

A statistical toolbox for diffusion processes and stochastic differential equations. Named after the Brownian Bridge.

Language: Jupyter Notebook - Size: 10.2 MB - Last synced: 24 days ago - Pushed: over 2 years ago - Stars: 111 - Forks: 20

uncomplicate/bayadera

High-performance Bayesian Data Analysis on the GPU in Clojure

Language: Clojure - Size: 1020 KB - Last synced: about 19 hours ago - Pushed: over 3 years ago - Stars: 360 - Forks: 24

avehtari/BDA_R_demos

Bayesian Data Analysis demos for R

Language: HTML - Size: 165 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 548 - Forks: 204

rogertrullo/Bayesian-Methods-for-Machine-Learning

Bayesian Methods for Machine Learning

Language: Jupyter Notebook - Size: 1.24 MB - Last synced: about 1 month ago - Pushed: over 6 years ago - Stars: 7 - Forks: 9