GitHub topics: hamiltonian-monte-carlo
dkanungo/Probabilistic-ML-for-finance-and-investing
Probabilistic Machine Learning for Finance and Investing: A Primer to Generative AI with Python
Language: Jupyter Notebook - Size: 2.15 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 95 - Forks: 41

ngalioto/mcmc-samplers
A Python package for MCMC sampling.
Language: Python - Size: 286 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

TuringLang/Turing.jl
Bayesian inference with probabilistic programming.
Language: Julia - Size: 35.9 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 2,107 - Forks: 225

giabaio/survHE
Survival analysis in health economic evaluation Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation. survHE can fit a large range of survival models using both a frequentist approach (by calling the R package flexsurv) and a Bayesian perspective.
Language: R - Size: 130 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 43 - Forks: 19

TuringLang/AdvancedHMC.jl
Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms
Language: Jupyter Notebook - Size: 4.35 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 274 - Forks: 44

matt-graham/mici
Manifold Markov chain Monte Carlo methods in Python
Language: Python - Size: 32.2 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 230 - Forks: 27

blackjax-devs/blackjax
BlackJAX is a Bayesian Inference library designed for ease of use, speed and modularity.
Language: Python - Size: 414 MB - Last synced at: 21 days ago - Pushed at: 2 months ago - Stars: 892 - Forks: 110

GinvLab/InverseAlgos.jl
Probabilistic and deterministic inverse algorithms for geophysical problems and beyond.
Language: Julia - Size: 5.82 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0

tpapp/DynamicHMC.jl
Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.
Language: Julia - Size: 1.15 MB - Last synced at: 12 days ago - Pushed at: 3 months ago - Stars: 250 - Forks: 21

miguelfrndz/pyHaiCS
Python Library for Hamiltonian Markov-Chain Monte-Carlo in Computational Statistics (pyHaiCS).
Language: Python - Size: 9.63 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

kthohr/mcmc
A C++ library of Markov Chain Monte Carlo (MCMC) methods
Language: C++ - Size: 217 KB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 178 - Forks: 47

m-clark/bayesian-basics
:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.
Language: Stan - Size: 93 MB - Last synced at: 22 days ago - Pushed at: about 3 years ago - Stars: 83 - Forks: 26

m-clark/models-by-example
By-hand code for models and algorithms. An update to the 'Miscellaneous-R-Code' repo.
Language: R - Size: 26.2 MB - Last synced at: 22 days ago - Pushed at: about 4 years ago - Stars: 67 - Forks: 18

draktr/monte-library
Monte is a set of Monte Carlo methods in Python. The package is written to be flexible, clear to understand and encompass variety of Monte Carlo methods.
Language: Python - Size: 114 KB - Last synced at: 14 days ago - Pushed at: 7 months ago - Stars: 4 - Forks: 0

giabaio/survHEhmc
Survival analysis in health economic evaluation using Bayesian modelling and Hamiltonian Monte Carlo Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation.
Language: C++ - Size: 79.1 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 0

matt-graham/thermodynamic-monte-carlo
Theano implementations of thermodynamic Monte Carlo algorithms
Language: Python - Size: 26.4 KB - Last synced at: 25 days ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0

egpbos/barcode
Bayesian reconstruction of cosmic density fields
Language: C++ - Size: 415 KB - Last synced at: 9 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

aymeric-roucher/predicting_bordeaux_wine_prices
Language: Jupyter Notebook - Size: 352 KB - Last synced at: 19 days ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 4

saforem2/l2hmc-qcd
Application of the L2HMC algorithm to simulations in lattice QCD.
Language: Jupyter Notebook - Size: 874 MB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 68 - Forks: 9

shermanlo77/oxwasp_exchange_mcmc
Java and Processing implementations for visualising various MCMC methods.
Language: Java - Size: 3.2 MB - Last synced at: 25 days ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

IdahoLabResearch/BIhNNs
The code enables to perform Bayesian inference in an efficient manner through the use of Hamiltonian Neural Networks (HNNs), Deep Neural Networks (DNNs), Neural ODEs, and Symplectic Neural Networks (SympNets) used with state-of-the-art sampling schemes like Hamiltonian Monte Carlo (HMC) and the No-U-Turn-Sampler (NUTS).
Language: Python - Size: 1.78 MB - Last synced at: 25 days ago - Pushed at: over 2 years ago - Stars: 14 - Forks: 6

larsgeb/hmclab
Language: Jupyter Notebook - Size: 70.1 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 25 - Forks: 1

vr308/Generalised-Gaussian-Processes
Fully Bayesian Inference in GPs - Gaussian and Generic Likelihoods
Language: Python - Size: 1.36 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 22 - Forks: 1

andrewwijaya/Bayesian-Neural-Networks-in-Julia
Bayesian Neural Networks implemented in Julia using variational inference and Hamiltonian Monte Carlo sampling.
Language: Jupyter Notebook - Size: 208 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 1

marcopollostat/Bayesian_Nonparametric_Frailty
Codes for estimates of intensity functions parameters of multivariate counting processes and density estimation for latent variable.
Language: C++ - Size: 45.9 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 1

armanbilge/phyloHMC
Hamiltonian Monte Carlo on the space of phylogenies
Language: Scala - Size: 128 KB - Last synced at: 5 days ago - Pushed at: about 8 years ago - Stars: 9 - Forks: 0

JohannesBuchner/PinNUTS
PinNUTS🥜 is dynamic Hamiltonian Monte Carlo algorithm implemented in Python
Language: Python - Size: 50.8 KB - Last synced at: 12 days ago - Pushed at: about 5 years ago - Stars: 11 - Forks: 1

lxuechen/BDMC
PyTorch implementation of Bidirectional Monte Carlo, Annealed Importance Sampling, and Hamiltonian Monte Carlo.
Language: Python - Size: 3.05 MB - Last synced at: 9 days ago - Pushed at: almost 4 years ago - Stars: 52 - Forks: 11

andrejobuljen/JaxPM-Hi-Fi-mocks Fork of DifferentiableUniverseInitiative/JaxPM
JAX-powered Hi-Fi mocks
Language: Jupyter Notebook - Size: 6.94 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

vrettasm/HMCpp
Hamiltonian Monte Carlo (HMC) sampling method in C++11.
Language: C++ - Size: 28.3 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

franciscopalmeromoya/biosc
Bayesian Inference of open cluster ages from photometry, parallaxes and Lithium measurements.
Language: Jupyter Notebook - Size: 2.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 3

gldmt-duke/CokerAmitaiSGHMC
An implementation of Stochastic Gradient Hamiltonian Monte Carlo by Gilad Amitai and Beau Coker
Language: Jupyter Notebook - Size: 6.67 MB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 4 - Forks: 0

manucarl/BCTM
Bayesian Conditional Transformation Models by Manuel Carlan, Thomas Kneib and Nadja Klein
Language: R - Size: 265 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

gil2rok/drghmc-old
Delayed Rejection Generalized HMC sampler
Language: C++ - Size: 41.5 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

TheUnsolvedDev/ProbabilisticMadness
Statistics and Machine Learning in depth analysis with Tensorflow Probability
Language: Python - Size: 80 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

salrodgom/ising_cation_3D_nanoporous
Exchange cations in STW zeolite (Si4+ and Ge4+) with an effective hamiltonian MC code.
Language: C - Size: 61.2 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

jandraor/delays
R. Soc. Open Sci (2023)
Language: R - Size: 2.29 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

PBarnaghi/Generative_CA Fork of nargesiPSH/Generative_CA
This project contains the implementation of using the generative models in continuous authentication on motion sensor data from the H-MOG dataset.
Size: 124 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

PBarnaghi/F-HMC Fork of nargesiPSH/F-HMC
Implementation of folded Folded Hamiltonian Monte Carlo for data imputation and augmentation on data collected from cancer patients who self-reported their symptoms experience during chemotherapy by a team in the School of the Nursing University of California.
Size: 619 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

compops/barx-sysid2018
Sparse Bayesian ARX models with flexible noise distributions
Language: R - Size: 9.31 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 6 - Forks: 2

physhik/Study-of-David-Mackay-s-book-
David Mackay's book review and problem solvings and own python codes, mathematica files
Language: Jupyter Notebook - Size: 28.5 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 47 - Forks: 9

aripakman/hmc-binary
Exact Hamiltonian Monte Carlo Sampler for Binary Distributions
Language: C++ - Size: 180 KB - Last synced at: over 1 year ago - Pushed at: over 9 years ago - Stars: 11 - Forks: 1

ronaldseoh/ronald_bdl
An experimental Python package for learning Bayesian Neural Network.
Language: Python - Size: 60.5 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 1

jandraor/SDR_Bayes
System Dynamics Review (2021)
Language: R - Size: 117 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 1

jandraor/SEIR_cohorts_calibration
Epidemics (2020)
Language: Stan - Size: 961 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

ocbe-uio/elfi Fork of elfi-dev/elfi
A Python package for likelihood-free inference (LFI) methods such as Approximate Bayesian Computation (ABC)
Language: Python - Size: 1.27 MB - Last synced at: 8 months ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

JohnReid/HAIS
Hamiltonian Annealed Importance Sampling (HAIS) in tensorflow
Language: Python - Size: 246 KB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 1

smasuti/mcmc_hmc
Hamiltonian Monte Carlo for a linear forward model.
Language: MATLAB - Size: 29.3 KB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 0

afiliot/Bayesian-Personalization-Of-A-Tumor-Growth-Model
Project on Medical Imaging - MVA MSc
Language: Jupyter Notebook - Size: 37.9 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 0

aripakman/hmc-tmg
Exact Hamiltonian Monte Carlo Sampler for Truncated Multivariate Gaussians
Language: MATLAB - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 8 - Forks: 1

mattbarrett98/MyMC3
Using the Hamiltonian Monte Carlo algorithm, and a visualisation of how the algorithm works. 'MyMC3' - HMC is the main algorithm used in Bayesian statistical package PyMC3.
Language: Python - Size: 1.21 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

Dorsa-Arezooji/Sick-Pigs
Optimal drug dosing with MCMC using rstan
Language: HTML - Size: 1 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

umangU/SingleNeuron-Hamilton-MC
Language: MATLAB - Size: 52.7 KB - Last synced at: 5 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

danielquintao/MCMC-project
This repo implements Robert, Wu, Stoehr, CP Robert - 2019 (https://arxiv.org/abs/1810.04449) algorithms eHMC and prHMC
Language: Python - Size: 2.76 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 2

saforem2/l2hmc Fork of brain-research/l2hmc
Modified TensorFlow implementation for training MCMC samplers on Lattice Gauge Theory models from the paper: Generalizing Hamiltonian Monte Carlo with Neural Network
Language: Jupyter Notebook - Size: 116 MB - Last synced at: 7 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

lpapailiou/snake
WIP - A snake game in java, allowing to play manually and challenge different bots.
Language: Java - Size: 256 KB - Last synced at: 23 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

flipdazed/Hybrid-Monte-Carlo
Used in Deep Machine Learning and Lattice Quantum Chromodynamics
Language: Mathematica - Size: 72.4 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 3

physics-machinelearning/Bayes
Code related to sampling, gaussian process and so on
Language: Jupyter Notebook - Size: 199 KB - Last synced at: 4 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

sbrml/hybrid_monte_carlo
Language: Jupyter Notebook - Size: 13.5 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

larsgeb/hmc-linear-systems
Hamiltonian Monte Carlo implemented for simple linear systems
Language: C++ - Size: 1.4 MB - Last synced at: 16 days ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 0
