GitHub topics: reaction-diffusion
JohnsonBiophysicsLab/ionerdss Fork of mjohn218/ionerdss
Python analysis and visualization tools for NERDSS
Language: Jupyter Notebook - Size: 329 MB - Last synced at: about 16 hours ago - Pushed at: about 18 hours ago - Stars: 4 - Forks: 2
Lukas-UC3M/Thesis---Mathematical-Models-with-Permeable-Membranes
This repository includes the three MATLAB scripts that I coded for my thesis project. These codes can be used obtain a numerical approximation to the solution of a system of elliptic PDEs with an interface condition. The codes can be used to solve the problem for the one-dimensional and two-dimensional spatial cases
Size: 4.88 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0
spatial-model-editor/spatial-model-editor
Spatial bio-chemical reaction model editor and simulator
Language: C++ - Size: 40 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 18 - Forks: 8
kojix2/gray_scott_gtk3
Ruby implementation of the Reaction diffusion system (Gray-Scott model)
Language: Ruby - Size: 12.6 MB - Last synced at: 21 days ago - Pushed at: 26 days ago - Stars: 3 - Forks: 0
finitewave/Finitewave
Open-source Python package for a wide range of tasks in modeling cardiac electrophysiology using finite-difference methods.
Language: Jupyter Notebook - Size: 144 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 2
neozhaoliang/pywonderland
A tour in the wonderland of math with python.
Language: Python - Size: 33.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4,213 - Forks: 347
readdy/readdy
Python / C++ based particle reaction-diffusion simulator
Language: C++ - Size: 7.25 MB - Last synced at: 27 days ago - Pushed at: about 1 month ago - Stars: 61 - Forks: 12
Pressio/pressio-demoapps
Suite of 1D, 2D, 3D demo apps of varying complexity with built-in support for sample mesh and exact Jacobians
Language: C++ - Size: 69.7 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 9 - Forks: 2
MathWorks-Teaching-Resources/Applied-PDEs
A collection of teaching scripts showing applications of partial differential equations to traffic modeling, battery thermal modeling, diffusion, and more.
Language: MATLAB - Size: 190 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 6 - Forks: 1
jasonwebb/reaction-diffusion-playground
Interactive reaction-diffusion simulation with organic patterns and behaviors that emerge from the interactions of two chemicals mixed together.
Language: JavaScript - Size: 40.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 168 - Forks: 24
GregP-Navdna/InfiniBlend
WebGL Shader blending animations
Language: JavaScript - Size: 57.6 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 1
CoposGroup/WavesExcitability
Math REU Summer 2025
Language: Jupyter Notebook - Size: 550 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
YehoanatnEzra/Dynamics-Networks-and-Computation-Course
In this repository contain all the assignments I have done throughout the course
Language: Jupyter Notebook - Size: 3.16 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
JohnsonBiophysicsLab/NERDSS Fork of mjohn218/NERDSS
NonEquilibrium Reaction-Diffusion Self-assembly Simulator
Language: C++ - Size: 144 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
GDSalvo/Radiolysis-simulations-with-Rad4D-
Rad4D is a script to model radiolysis in chemically, physically , geometrically complex scenarios
Size: 1.43 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
postspectacular/toxiclibs
Official master repo (Git version)
Language: Java - Size: 29.8 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 183 - Forks: 45
PedroRavaglia/3D-Reaction-Diffusion
3D reaction diffusion project using WebGL 2.0 and ray casting to visualize the volume data.
Language: JavaScript - Size: 264 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
piellardj/reaction-diffusion-webgl
Reaction-diffusion on GPU in WebGL.
Language: TypeScript - Size: 3.53 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 35 - Forks: 3
dlozeve/reaction-diffusion
Reaction-Diffusion system simulation in Dyalog APL and BQN
Language: APL - Size: 930 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 1
mdonadoni/reaction-diffusion
GPU-accelerated simulation of a reaction-diffusion system
Language: Rust - Size: 77.1 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
bb4/bb4-simulations
A collection of java simulations. Examples include reaction diffusion, fractals, henon phase exploration, snakes, dice, and fluid flow.
Language: Scala - Size: 23.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 2
bre-s/rx_diffusion
Python project for a reaction-diffusion system
Language: Python - Size: 13.7 KB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
benmaier/reaction-diffusion
Some Python examples to obtain reaction-diffusion results and animations.
Language: Jupyter Notebook - Size: 51.8 MB - Last synced at: 4 months ago - Pushed at: over 6 years ago - Stars: 88 - Forks: 19
B-Bischoff/Rhythmic-diffusion
Generate visuals based on music rhythm using reaction-diffusion.
Language: C++ - Size: 11.6 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 9 - Forks: 1
honzakj/ReactionDiffusion3D_Processing
Simple true 3D reaction diffusion made in Processing
Language: Processing - Size: 12.7 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
zaidanfaza/Math-Modelling-Neurodegenerative-Disease
Supporting Files of paper titled "Dynamic Simulation of Parkinson's Disease and ALS Propagation in the Brain: A Reaction-Diffusion on Brain Networks Approach"
Language: MATLAB - Size: 29.3 MB - Last synced at: 9 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
jk-keller/rotational-growth
Photoshop scripts to generate Turing patterns / reaction diffusion systems via rotation
Language: JavaScript - Size: 7.47 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 14 - Forks: 0
gszep/reaction-diffusion
Interactive reaction-diffusion system simulator in two spatial dimensions
Language: JavaScript - Size: 97.8 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
smrfeld/phys_dbd
Physics-based machine learning with dynamic Boltzmann distributions
Language: Jupyter Notebook - Size: 19.3 MB - Last synced at: 2 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
achattaraj/OptimalCondensateSize
Multi-condensate state as a functional strategy to optimize the cell signaling output
Language: Jupyter Notebook - Size: 346 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
totoLab/interactive_reaction_diffusion
Interactive reaction-diffusion simulation implemented in JavaScript
Language: JavaScript - Size: 213 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
elisasovrano/WebPageNLM21
Source code for the website of the Nonlinear Meeting 2021
Language: HTML - Size: 41.8 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
colejd/Reaction-Diffusion-ThreeJS
Reaction-Diffusion simulation in Three.js
Language: JavaScript - Size: 5.81 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 40 - Forks: 1
samuelbx/pyspecies
Blazing-fast simulation of advanced population dynamics
Language: Python - Size: 32.4 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1
LCB0B/Physarum_Transport_Network
ABM of Physarum tranport networks
Language: Python - Size: 2.46 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
ADicksonLab/OpenRXN
A free, open-source tool for modeling chemical reaction networks in Python
Language: Python - Size: 46.9 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 2
ScepticaScientific/Disorder
Codes used in the company's studies on disorder and self-organisation.
Language: Fortran - Size: 40 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
achattaraj/OptimalCondensateCount
Simulation and data analysis methods used in the study - "Multi-condensate state as a functional strategy to optimize the cell signaling output".
Language: Jupyter Notebook - Size: 16 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
mbn010/Gray-Scott-reaction-diffusion-on-a-sphere
A finite element method implementation in Matlab to solve the Gray-Scott reaction-diffusion equation on the surface of a sphere.
Language: MATLAB - Size: 905 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 3
vaishnu7/three-variable-diffusive-model
The Matlab code here is an attempt to model a 3D graph for the paper "Selecting Spatio-temporal patterns by substrate injection in a reaction-diffusion system "
Language: MATLAB - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
aitech-lab/GrayScott Fork of pmneila/jsexp
The experiments with an implementation of a Gray-Scott reaction-diffusion model
Language: JavaScript - Size: 22.2 MB - Last synced at: over 1 year ago - Pushed at: about 12 years ago - Stars: 2 - Forks: 0
danieledapo/rd
Reaction-Diffusion using the Gray-Scott model
Language: Rust - Size: 201 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
Solidsilver/reaction-diffusion-project
Code and LaTeX for my final project in Math 448 (PDE's) at EWU.
Language: TeX - Size: 19.3 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
fogleman/GrayScott
Simple Gray Scott Reaction Diffusion model implemented in C++ and OpenCL
Language: C++ - Size: 39.1 KB - Last synced at: 4 months ago - Pushed at: about 6 years ago - Stars: 12 - Forks: 2
markstock/grayscott
Gray-Scott reaction-diffusion simulation in Kokkos
Language: C++ - Size: 163 KB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
RakambdaOrg/DI5---Reaction-diffusion 📦
Little program for a class
Language: C - Size: 1 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
HannesOS/Chaos-in-the-wake-of-invasion
Chaos behind invasive predator fronts in a partial differential equation (reaction-diffusion) system
Language: Jupyter Notebook - Size: 3.88 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
sachu92/gray-scott-rd
Reaction Diffusion simulation of Gray-Scott model
Language: C++ - Size: 712 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1
cvijoviclab/cdc42_ClassicalAndNonClassicalTuringConditions
Spatiotemporal mathematical model of Cdc42-mediated cell polarisation consisting of a coupled system of reaction diffusion equations
Language: TeX - Size: 80.9 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
ndalchau/turing-model-reduction
Matlab scripts to recreate figures of the JR Soc Interface article "Model reduction enables Turing instability analysis of large reaction-diffusion models"
Language: MATLAB - Size: 55.7 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 4
jimothy001/GrayScottPerlin
Reaction diffusion Gray Scott model over a Perlin noise vector field
Language: JavaScript - Size: 70.2 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
duyminh1998/cellular-automata
Code for my Independent Study course at Johns Hopkins University on Cellular Automata modeling.
Language: Python - Size: 1.81 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
Squalm/Emergence
A collection of models demonstrating emergent behaviour.
Language: Julia - Size: 254 MB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
WalterNadalin/Reaction-DiffusionProcesses
An implementation of a pratical guide to stochastic simulations of reaction-diffusion processes
Language: Rust - Size: 14.9 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
neusb/Reaction-Diffusion
Reaction Diffusion Simulation :D
Language: C++ - Size: 6.52 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0
pavel-perina/reaction-diffusion-cpp
Reaction-Diffusion simulation in C++
Language: C++ - Size: 383 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
linusmossberg/reaction-diffusion
WebGL reaction-diffusion system with variable anisotropic diffusion and Phong illumination.
Language: JavaScript - Size: 16.5 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 36 - Forks: 4
keichi/gray-scott 📦
3D Gray-Scott reaction-diffusion code
Language: C++ - Size: 737 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0
bigquantum/yolohtli
Yolohtli is a 2D cardiac electrophysiology solver developed in C/CUDA parallel programming language. The solver has many functionalities to facilitate the user experience and analysis. These include easy to use loading/saving options, keyboard/mouse user interactivity, and real time OpenGL graphics. Moreover, several non-standard functions have been implemented to monitor the evolution of spatio-temporal patterns, such as spiral tip tracking, contour tracking, complex boundaries, external stimulation, and many more.
Language: Cuda - Size: 5.82 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
ifilot/wavefuse
Gray-Scott reaction-diffusion system in 3D using CUDA
Language: C - Size: 3.49 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 7 - Forks: 3
volfegan/PixelGlitch
Image glitch visualization using various Pixel Sorting methods for Processing
Language: Processing - Size: 8.44 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 25 - Forks: 2
shivChitinous/tureactor
models of 2D reaction-diffusion systems
Language: Jupyter Notebook - Size: 224 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
pmontalb/TuringPatterns
C++/CUDA Implementation of the most popular reaction-diffusion dynamics
Language: Cuda - Size: 100 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 13 - Forks: 0
radu-dogaru/fast-fhn-rd-cnn-simulators
Four simulators for reaction-diffusion cellular nonlinear networks running on Google COLAB
Language: Jupyter Notebook - Size: 4.14 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0
kimy-de/fcnn
Five-point stencil Convolutional Neural Networks (FCNNs)
Language: Python - Size: 392 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
drkndl/Reaction-Diffusion
Python3 implementation of the reaction-diffusion equation
Language: Jupyter Notebook - Size: 14.2 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0
PedroRavaglia/Reaction-Diffusion
Implementation of the Reaction Diffusion system using the Gray-Scott model with WebGL 2.0.
Language: JavaScript - Size: 52.7 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
rafael-a-monteiro-math/Binary_classification_phase_separation
Python code for the paper "Binary classification as a phase separation process", by Rafael Monteiro. Further information can be found in the tutorial website below.
Language: Jupyter Notebook - Size: 37.7 MB - Last synced at: about 1 month ago - Pushed at: almost 4 years ago - Stars: 4 - Forks: 0
msakuta/rd-system-wasm
Reaction-Diffusion system simulation in WASM with Rust
Language: Rust - Size: 506 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0
cglabnccu/stylizationRD
An implementation of 'Image stylization using anisotropic reaction diffusion', The Visual Computer (SCIE)
Language: C++ - Size: 133 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 13 - Forks: 3
juno-hwang/reaction-diffusion-system
Numerical analysis of reaction-diffusion systems
Language: Jupyter Notebook - Size: 2.37 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
Josephbakulikira/Reaction-Diffusion-python-pygame
Reaction diffusion in python with pygame
Language: Python - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
js1200/genelife
Genetic extension to Conway's Game of Life with spatiotemporal and genetic analysis tools.
Language: C - Size: 782 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
afiliot/Bayesian-Personalization-Of-A-Tumor-Growth-Model
Project on Medical Imaging - MVA MSc
Language: Jupyter Notebook - Size: 37.9 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 0
basameera/Predator-Prey
Predator-prey simulator using Cellular Automata
Language: Processing - Size: 5 MB - Last synced at: 5 months ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 0
jbramburger/FKPP-Burgers
Code for the paper "The speed of traveling waves in a FKPP-Burgers system"
Language: MATLAB - Size: 7.81 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
jbramburger/Minimum-Wave-Speeds
Code for the paper "Minimum wave speeds in monostable reaction-diffusion equations: sharp bounds by polynomial optimization"
Language: MATLAB - Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2
georginaalbadri/reaction-advection-diffusion
1D and 2D axisymmetric solvers for reaction-advection-diffusion PDE. Also includes applications: parameter sweep, parameter sensitivity analysis (SALib), parameter optimisation (PSO - pyswarms).
Language: Jupyter Notebook - Size: 204 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
aanrii/ofxRD
An openFrameworks add-on for computing reaction-diffusion equations.
Language: C++ - Size: 2.13 MB - Last synced at: over 2 years ago - Pushed at: almost 8 years ago - Stars: 13 - Forks: 1
salt-die/reaction-diffusion
pygame implementation of reaction-diffusion
Language: Python - Size: 15.5 MB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0
AnirudhMukherjee/diffuse-reaction
A p5.js sketch to visualize the reaction diffusion algorithm
Language: JavaScript - Size: 568 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
EPFL-LCSB/openbread
Language: C++ - Size: 113 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1
chinghao0703/Velocity-locking
Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
yanastaneva8/travelling-waves
Solving a single species reaction-diffusion equation and the scaled Lotka-Volterra via travelling waves.
Language: Matlab - Size: 4.78 MB - Last synced at: 3 months ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 2
romainfontaine/vida_artificial
Language: C++ - Size: 106 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
rodrigosetti/reaction-diffusion
An implementation of Reaction-Diffusion by the Gray-Scott Model in C
Language: C - Size: 406 KB - Last synced at: 5 months ago - Pushed at: over 10 years ago - Stars: 0 - Forks: 2
