Data

Tools

Indexes

Applications

Experiments

Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: morphogenesis

bruvellu/cephalic-furrow

Cephalic furrow project repository

Language: HTML - Size: 40.9 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 0

Eden-Eldith/prometheus-llm

Custom transformer language model with modular design, research logs, and experimental EdenCore-inspired architectures.

Language: Python - Size: 313 KB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 0 - Forks: 0

jasonwebb/2d-differential-growth-experiments

Visual experiments exploring differential growth as a 2D morphogenesis tool.

Language: JavaScript - Size: 100 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 241 - Forks: 18

jasonwebb/2d-space-colonization-experiments

Visual experiments exploring space colonization as a 2D morphogenesis tool.

Language: JavaScript - Size: 7 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 202 - Forks: 17

Aadityaza/3d-Growing-neural-cellular-automata

This project is inspired by the paper "Growing Neural Cellular Automata" found at the link: https://distill.pub/2020/growing-ca/. The project's objective is to develop an extension of the methodology described in this paper to enable the generation of complex structures in three dimensions.

Language: Jupyter Notebook - Size: 1.27 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 11 - Forks: 2

jasonwebb/morphogenesis-resources

Resources on the topic of digital morphogenesis (creating form with code). Includes links to major articles, code repos, creative projects, books, software, and more.

Size: 43.5 MB - Last synced at: 3 months ago - Pushed at: 4 months ago - Stars: 2,092 - Forks: 118

gioda/FeARLesS

4D reconstruction of developmental trajectories using spherical harmonics

Language: Python - Size: 68.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 21 - Forks: 2

germannp/yalla

Spheroid models of morphogenesis for the GPU.

Language: Cuda - Size: 3.17 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 41 - Forks: 8

n-shevko/cellular_automata

Reproduction of the "Growing Neural Cellular Automata" paper

Language: Python - Size: 1.19 MB - Last synced at: 3 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 0

jasonwebb/reaction-diffusion-playground

Interactive reaction-diffusion simulation with organic patterns and behaviors that emerge from the interactions of two chemicals mixed together.

Language: JavaScript - Size: 40.5 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 161 - Forks: 21

SilasBoyeNissen/Theoretical-tool-bridging-cell-polarities-with-development-of-robust-morphologies

"Theoretical tool bridging cell polarities with development of robust morphologies" published in eLife (2018)

Language: MATLAB - Size: 986 MB - Last synced at: 2 months ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

gdavid57/3d-mask-r-cnn

TensorFlow implementation of the 3D Mask R-CNN. The Mask R-CNN is an end-to-end network for instance segmentation. With compiled 3D Non Max Suppression and Crop And Resize.

Language: Python - Size: 18.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

jasonwebb/cellular-automata-explorer

(WIP) An interactive web app for exploring cellular automata.

Language: JavaScript - Size: 3.81 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 19 - Forks: 2

fuentesigma/pygen

PyGen's Home

Language: Jupyter Notebook - Size: 39.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 1

jasonwebb/2d-diffusion-limited-aggregation-experiments

Visual experiments exploring diffusion-limited aggregation (DLA) as a 2D morphogenesis tool.

Language: JavaScript - Size: 19.3 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 62 - Forks: 10

aalto-mediacode/differential-growth

Implementation of the differential growth algorithm

Language: C++ - Size: 17.4 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

openalea-incubator/lgrass

A 3D Functionnal Structural Plant Model of perennial grasses morphogenesis and phenology

Language: Python - Size: 25.5 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 9

openalea-incubator/WheatFspm

WheatFspm is a Functional Structural Plant Model (FSPM) of wheat based on an innovative modelling framework for a better understanding of grass morphogenesis and C-N economy in interaction with environmental conditions.

Language: Python - Size: 34.2 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 8

DianaKhoromskaia/EpithelialShell

Simulation code for dynamics and steadys state deformations of axisymmetric epithelial shells with active tensions and bending moments.

Language: MATLAB - Size: 137 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

justgos/thingness

Evolutionary exploration of cell-level morphogenesis in 2D

Language: Jupyter Notebook - Size: 3.66 MB - Last synced at: 15 days ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

nowickam/differential-growth

Implementation of the differential growth algorithm in openFrameworks

Language: C++ - Size: 20.6 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

jsutlive/Cell-Mechanics-Simulator

A simple mechanics-based approach to simulating cells. Uses a component-based GUI approach

Language: Java - Size: 15.4 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

mathigatti/CellularForms Fork of esimov/CellularForms

An implementation of Andy Lomas' Cellular Forms.

Language: C++ - Size: 369 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

jasonwebb/unity-space-colonization

Unity implementation of the space colonization algorithm to generate organic branching structures.

Language: C# - Size: 22.1 MB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 0

fuentesigma/furry-enigma

Simulation on VisPy

Language: Python - Size: 1.92 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

sophietheis/CellPacking

This is flat monolayer simulation package for T1 transition under stress

Language: Jupyter Notebook - Size: 14.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1

cristina-v-melnic/pattern-formation

Modelling pattern formation by numerical integration of systems of coupled convection-diffusion differential equations.

Language: Python - Size: 14.2 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

gszep/double-exclusive-reporter

Code supplementary for Grant P. et al. 2020. Interpretation of morphogen gradients by a bistable circuit

Language: Jupyter Notebook - Size: 480 MB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

juno-hwang/reaction-diffusion-system

Numerical analysis of reaction-diffusion systems

Language: Jupyter Notebook - Size: 2.37 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

Bradwave/turingpattern

A brief dissertation (in Italian) of Turing patterns and morphogenesis.

Language: HTML - Size: 185 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

Related Keywords
morphogenesis 30 javascript 5 generative-art 4 2d 3 creative-coding 3 simulation 3 differential-growth 3 p5js 2 procedural 2 developmental-biology 2 space-colonization 2 space-colonization-algorithm 2 biophysics 2 cellular-automata 2 graph 2 python 2 raymarching 2 openalea 2 procedural-generation 2 fspm 2 grass 2 self-organization 2 reaction-diffusion 2 threejs 2 turing-pattern 2 evolution 2 deep-learning 2 planar-cell-polarity 1 sea-urchin 1 flowering 1 symmetry-breaking 1 toolbox 1 tubulogenesis 1 voronoi-approach 1 dla 1 diffusion-limited-aggregation 1 crop-and-resize-3d 1 differential-geometry 1 instance-segmentation 1 webgl 1 mask-rcnn 1 non-max-suppression-3d 1 shaders 1 three-dimensional 1 cellular-automaton 1 game-of-life 1 glsl 1 turing 1 mathematics 1 numerical-analysis 1 diffusion 1 synthetic-biology 1 microsoft 1 julia-language 1 numerical-integral-method 1 convection-diffusion 1 vertexmodel 1 t1transition 1 stress 1 statistical-mechanics 1 molecular-dynamics-simulation 1 brownian-dynamics 1 unity 1 branching 1 cellular-growth 1 andy-lomas 1 physics-simulation 1 physics 1 biological-simulations 1 activesurfaces 1 wheat 1 metabolism 1 phenology 1 lsystem 1 heading 1 pcp 1 growth-algorithms 1 computational-geometry 1 voxel 1 neural-cellular-automata 1 growing-neural-cellular-automata 1 3d-reconstruction 1 3d-growing-neural-cellular-automata 1 3d-cnn 1 leaf-venation 1 hyphae 1 transformer 1 subjectivity 1 recursive-dignity 1 philosophy-of-mind 1 language-model 1 hermeneutics 1 consciousness 1 cognitive-science 1 cognitive-architecture 1 autopoietic-systems 1 autopoiesis 1 artificial-intelligence 1 ai-ethics 1 mechanobiology 1