DiamondLightSource/httomo

High-throughput tomography pipeline

Language: Python - Size: 284 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 8 - Forks: 4

mantidproject/mantidimaging

Graphical toolkit for neutron imaging.

Language: Python - Size: 63.9 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 14 - Forks: 7

sandialabs/pyGSTi

A python implementation of Gate Set Tomography

Language: Jupyter Notebook - Size: 124 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 150 - Forks: 55

optui/ProjeCT

Full-stack application for creating tomographic projections.

Language: Python - Size: 7.17 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 0

hanjinliu/cylindra

Fourier analysis and subtomogram averaging of heterogenic cylindrical structures

Language: Python - Size: 40.3 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 10 - Forks: 0

matteo-ronchetti/torch-radon

Computational Tomography in PyTorch

Language: Python - Size: 16 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 243 - Forks: 49

OpenChemistry/tomviz

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

Language: C++ - Size: 22.9 MB - Last synced at: 4 days ago - Pushed at: 11 months ago - Stars: 336 - Forks: 86

villekf/OMEGA

Open-source multi-dimensional tomographic reconstruction software (OMEGA)

Language: MATLAB - Size: 77.9 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 82 - Forks: 18

dkazanc/ToMoBAR

TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software

Language: Python - Size: 67.4 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 52 - Forks: 14

TomographicImaging/CIL

A versatile python framework for tomographic imaging

Language: Python - Size: 193 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 113 - Forks: 48

PMEAL/porespy

A set of tools for characterizing and analyzing 3D images of porous materials

Language: Python - Size: 1.36 GB - Last synced at: 2 days ago - Pushed at: 17 days ago - Stars: 344 - Forks: 106

CERN/TIGRE

TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox

Language: MATLAB - Size: 154 MB - Last synced at: 9 days ago - Pushed at: 17 days ago - Stars: 656 - Forks: 206

odlgroup/odl

Operator Discretization Library https://odlgroup.github.io/odl/

Language: Python - Size: 46.3 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 399 - Forks: 107

Bonelab/Ogo

Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.

Language: Python - Size: 3.07 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 1

EO-College/tomography_tutorial

A tutorial for Synthetic Aperture Radar Tomography

Language: Jupyter Notebook - Size: 39.9 MB - Last synced at: 9 days ago - Pushed at: about 2 years ago - Stars: 117 - Forks: 42

cabouman/mbirjax

MBIRJAX is a Python package for Model Based Iterative Reconstruction (MBIR) of images from tomographic data.

Language: Python - Size: 2.62 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 14 - Forks: 6

LucaDeSiena/MuRAT

A multi-resolution seismic attenuation tomography code - currently in its 3.0 release

Language: MATLAB - Size: 237 MB - Last synced at: 14 days ago - Pushed at: 7 months ago - Stars: 54 - Forks: 31

LLNL/LEAP

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch

Language: Cuda - Size: 13.1 MB - Last synced at: 13 days ago - Pushed at: 21 days ago - Stars: 153 - Forks: 16

cicwi/PyCorrectedEmissionCT

Physically corrected projectors for X-ray induced emission CT.

Language: Python - Size: 15.5 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 7 - Forks: 3

yijiang1/fold_slice

Electron/X-ray ptychography and tomography/laminography

Language: MATLAB - Size: 291 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 93 - Forks: 33

kulvait/KCT_denpy

Python package for on disk storage of numpy arrays and tomographic data manipulation

Language: Python - Size: 135 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 1 - Forks: 0

invesalius/invesalius3

3D medical imaging reconstruction software

Language: Python - Size: 296 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 702 - Forks: 357

ToFuProject/tofu

Project for an open-source python library for synthetic diagnostics and tomography for Fusion devices

Language: Python - Size: 212 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 76 - Forks: 11

JeffFessler/MIRT.jl

MIRT: Michigan Image Reconstruction Toolbox (Julia version)

Language: Julia - Size: 2.26 MB - Last synced at: 5 days ago - Pushed at: 20 days ago - Stars: 115 - Forks: 28

GeoscienceAustralia/hiperseis

High Performance Seismologic Data and Metadata Processing System

Language: Jupyter Notebook - Size: 436 MB - Last synced at: 12 days ago - Pushed at: 23 days ago - Stars: 60 - Forks: 23

SWC-Advanced-Microscopy/BakingTray

Serial-section automated anatomy extension for ScanImage

Language: MATLAB - Size: 2.3 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 12 - Forks: 5

zehao99/CEIT

Python Package for EIT(Electric Impedance Tomography)-like problems using Gauss-Newton method.

Language: Python - Size: 30 MB - Last synced at: 17 days ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 3

munechika-koyo/cherab_lhd

CHERAB LHD machine-dependent extension

Language: Python - Size: 5.4 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

ALBA-Synchrotron-Methodology/artis_tomo

Computational methods for tomography and microscopy

Language: Python - Size: 109 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 1 - Forks: 0

DiamondLightSource/httomolibgpu

A library of GPU-enabled data processing and reconstruction methods for tomography

Language: Python - Size: 126 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 6 - Forks: 6

larsgeb/hmclab

Language: Jupyter Notebook - Size: 70.1 MB - Last synced at: 23 days ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 1

moosmann/matlab

Data reconstruction and analysis tools for tomography data acquired at the P05 Imaging Beamline (IBL) and the P07 High-Energy Material Science (HEMS) beamline at PETRA III at DESY, both operated by Helmholtz-Zentrum Hereon.

Language: MATLAB - Size: 21.5 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 9 - Forks: 7

DiamondLightSource/discorpy

Camera calibration with sub-pixel accuracy: https://discorpy.readthedocs.io/

Language: Python - Size: 130 MB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 63 - Forks: 8

fmagrini/seislib

Seismic imaging at local, regional, and global scale

Language: Python - Size: 7.29 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 88 - Forks: 24

rigetti/forest-benchmarking

A library for quantum characterization, verification, validation (QCVV), and benchmarking using pyQuil.

Language: Python - Size: 11.8 MB - Last synced at: 21 days ago - Pushed at: 8 months ago - Stars: 56 - Forks: 21

neutronimaging/imagingsuite

Sources for imaging related tools

Language: Jupyter Notebook - Size: 297 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 20 - Forks: 11

usnistgov/etspy

A Hyperspy extension package for processing and reconstructing electron tomography data

Language: Python - Size: 300 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 15 - Forks: 6

ahendriksen/tomosipo

A library for painless 3D tomographic reconstruction

Language: Jupyter Notebook - Size: 1.84 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 94 - Forks: 18

NotAMadTheorist/the-pythons-nest

A compilation of some of my small programming projects since 2018.

Language: Python - Size: 1.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 1

groupeLIAMG/bh_tomo

A Matlab borehole radar/seismic tomography package

Language: MATLAB - Size: 86.3 MB - Last synced at: 4 days ago - Pushed at: over 5 years ago - Stars: 36 - Forks: 20

Tomotok/core

The core part of Tomotok package, a collection of algorithms used for tokamak plasma tomography

Language: Python - Size: 843 KB - Last synced at: 13 days ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 5

LLNL/pysaber

Python package for a systems approach to blur estimation and reduction

Language: Python - Size: 295 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 4

MLI-lab/DeepDeWedge

Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms

Language: Jupyter Notebook - Size: 8.65 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 39 - Forks: 9

roflmaostc/RadonKA.jl

A simple yet sufficiently fast (attenuated) Radon and backproject implementation using KernelAbstractions.jl. Runs on CPU, CUDA, ...

Language: Julia - Size: 10.8 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 17 - Forks: 1

SESAME-Synchrotron/BEATS_recon

Reconstruction scripts and examples for the BEATS beamline of SESAME

Language: Jupyter Notebook - Size: 84.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 2

gianthk/alrecon

Tomography reconstruction Web App that keeps non-expert users in mind

Language: Python - Size: 6.48 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 1

XYangXRay/ganrec

Data reconstruction framework with GANs

Language: Python - Size: 285 MB - Last synced at: 17 days ago - Pushed at: 4 months ago - Stars: 4 - Forks: 3

MaximeLagrange/muograph

Muon tomography data analysis library

Language: Jupyter Notebook - Size: 61 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 5 - Forks: 5

gianthk/BEATS_raytracing

Raytracing, flux and beam properties calculations for the BEATS beamline of SESAME

Language: Jupyter Notebook - Size: 98.6 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

neutronimaging/CBCTCalibration

A prototype an algorithm to calibrate the CBCT geometry

Language: Jupyter Notebook - Size: 17 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 16 - Forks: 5

kulvait/KCT_cbct

Fast, accurate and reliable software for algebraic CT reconstruction

Language: C++ - Size: 1.55 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 22 - Forks: 7

algotom/algotom

Data processing algorithms for tomography: https://algotom.readthedocs.io

Language: Python - Size: 68.9 MB - Last synced at: 28 days ago - Pushed at: 6 months ago - Stars: 50 - Forks: 17

cabouman/svmbir

Fast code for parallel or fan beam tomographic reconstruction

Language: Python - Size: 5.21 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 8

OpenEIT/OpenEIT

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

Language: Python - Size: 188 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 230 - Forks: 72

RI-imaging/radontea

python library for tomographic image reconstruction

Language: Python - Size: 1.09 MB - Last synced at: 20 days ago - Pushed at: 4 months ago - Stars: 16 - Forks: 8

TomographicImaging/CCPi-Regularisation-Toolkit

The set of CPU/GPU optimised regularisation modules for iterative image reconstruction and other image processing tasks

Language: C - Size: 106 MB - Last synced at: 10 days ago - Pushed at: 6 months ago - Stars: 56 - Forks: 25

kuixu/awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

Size: 528 KB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 142 - Forks: 35

JuliaTomo/TomoForward.jl

Julia wrapper of ASTRA toolbox forward projection codes

Language: Julia - Size: 38.1 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

JuliaTomo/XfromProjections.jl

Tomographic image reconstruction package in Julia

Language: Julia - Size: 165 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 1

PyTomography/SPECTPSFToolbox

Toolbox for obtaining PSF models of gamma cameras so they can be used in SPECT reconstruction

Language: Python - Size: 10.3 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 13 - Forks: 1

axruff/DeepLearning

A collection of research papers, datasets and software on Deep Learning

Size: 969 KB - Last synced at: 29 days ago - Pushed at: almost 2 years ago - Stars: 30 - Forks: 7

AdvancedPhotonSource/tike

Repository for ptychography software

Language: Python - Size: 91.4 MB - Last synced at: 26 days ago - Pushed at: 10 months ago - Stars: 30 - Forks: 15

dmici/NeuTomPy-toolbox

Python package for tomographic data processing and reconstruction

Language: Python - Size: 3.71 MB - Last synced at: 25 days ago - Pushed at: over 4 years ago - Stars: 32 - Forks: 10

kylechampley/XrayPhysics

C/C++ library and Python bindings for x-ray cross sections, x-ray source spectra modeling, multi-material beam hardening correction, and dual energy decomposition algorithms

Language: C++ - Size: 2.23 MB - Last synced at: 2 months ago - Pushed at: 5 months ago - Stars: 33 - Forks: 2

WebxCT/WebCT

Interactive Web UI for X-ray CT with Real-time Results

Language: TypeScript - Size: 33 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 12 - Forks: 2

caozixiong/dragonfly3dworld-cn

Size: 68.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

JuliaImageRecon/SPECTrecon.jl

Julia code for SPECT image reconstruction

Language: Julia - Size: 10.5 MB - Last synced at: 4 days ago - Pushed at: 3 months ago - Stars: 9 - Forks: 1

elemeng/mrc2movie

Convert mrc image from cryoEM and cryo-ET (tomo) into a movie or pngs for quickly checking and presentation.

Language: Python - Size: 111 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

cherenkov-plenoscope/ray_voxel_overlap

Estimating system-matrices for tomography

Language: Python - Size: 46.9 KB - Last synced at: 3 days ago - Pushed at: 12 months ago - Stars: 6 - Forks: 0

sedaboni/TomoSelfDEQ

TomoSelfDEQ: Self-Supervised Deep Equilibrium Learning for Sparse-Angle CT Reconstruction (2025)

Language: Python - Size: 15.3 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

EIT-team/ScouseTom

Open Source EIT system using Keithley 6221 current source and EEG systems

Language: C++ - Size: 166 MB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 7

jmbhughes/solartom

Python solar tomography package with Rust backend

Language: Rust - Size: 3.57 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0

OhGreat/DART_python

DART (Discrete Algebric Reconstruction Technique) iterative reconstruction algorithm for discrete tomography.

Language: Python - Size: 80.3 MB - Last synced at: 18 days ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 2

olivierverdier/diffeopt

Optimisation on Diffeomorphisms

Language: Python - Size: 198 KB - Last synced at: 24 days ago - Pushed at: 4 months ago - Stars: 12 - Forks: 1

LazzyIzzi/ImageJPlugins_CT_Tools

ImageJ UI examples calling the MuMassCalculator library

Language: Java - Size: 336 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

nghia-vo/sarepy

Numerical techniques for ring artifact removal in tomography https://sarepy.readthedocs.io/

Language: Python - Size: 162 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 47 - Forks: 11

KudryashevLab/TomoBEAR

TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

Language: MATLAB - Size: 2.96 MB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 28 - Forks: 6

bwmr/seg-select

Turn voxel-segmentations to binary based on voxel value

Language: Python - Size: 9.77 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

lruizap/Tomography-with-Algebraic-Topology

This project aims to analyze images using algebraic topology. The goal is to extract structural information from images through mathematical concepts such as connected components and loops.

Language: Jupyter Notebook - Size: 1 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

xumi1993/SurfATT-iso

Surface wave Adjoint Travel-time Tomography

Language: Fortran - Size: 2.92 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 14 - Forks: 3

arttumiettinen/pi2

C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.

Language: C++ - Size: 4.85 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 54 - Forks: 14

francescobrun/mr-bmd

Code for the article "Multi-material spectral photon-counting micro-CT with minimum residual decomposition and self-supervised deep denoising", Optics Express, Vol. 30, Issue 24, pp. 42995-43011 (2022)

Language: Python - Size: 14.1 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 3 - Forks: 0

Kankelborg-Group/ESIS

Repository for code and information relating to the EUV Snapshot Imaging Spectrograph (ESIS).

Language: Jupyter Notebook - Size: 137 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 3 - Forks: 0

JuliaImageRecon/Examples

Image reconstruction examples using the Julia language

Language: Julia - Size: 5.56 MB - Last synced at: 2 months ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1

AnderBiguri/PhDThesis

A.Biguri PhD thesis: Iterative Reconstruction and Motion compensation in Computed Tomography on GPUs

Language: TeX - Size: 142 MB - Last synced at: 2 months ago - Pushed at: over 6 years ago - Stars: 35 - Forks: 5

IsoNet-cryoET/IsoNet

Self-supervised learning for isotropic cryoET reconstruction

Language: Python - Size: 116 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 75 - Forks: 13

tomopy/tomopy

Tomographic Reconstruction in Python

Language: Python - Size: 55.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 330 - Forks: 277

AdvancedPhotonSource/xdesign

Tools for designing x-ray phantoms and experiments.

Language: Python - Size: 15.1 MB - Last synced at: 9 days ago - Pushed at: almost 2 years ago - Stars: 28 - Forks: 16

OpenChemistry/materialsdatabank

An information portal for 3D atomic electron tomography data

Language: JavaScript - Size: 1.11 MB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 8 - Forks: 5

dkazanc/TomoPhantom

Software to generate 2D/3D/4D analytical phantoms and their Radon transforms (parallel beam) for image processing

Language: C - Size: 18.9 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 121 - Forks: 54

cicwi/flexDATA

I/O routines for CT data

Language: Python - Size: 6.35 MB - Last synced at: 13 days ago - Pushed at: 9 months ago - Stars: 6 - Forks: 5

maxiv-science/DanMAX_jupyter_scripts

Various data analysis scripts developed at the DanMAX beamline

Language: Jupyter Notebook - Size: 1.15 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

ECLIPSE-Lab/End2EndPtychoTomo_code

Code for the paper: "Near-Isotropic Sub-Ångstrom 3D Resolution Phase Contrast Imaging Achieved by End-to-End Ptychographic Electron Tomography"

Language: Python - Size: 115 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

jtschwar/tomo_TV

C++ library for Regularized 2D and 3D Tomography Reconstructions.

Language: Jupyter Notebook - Size: 174 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 17 - Forks: 7

schipp/eikonal_tomography

Synthetic demonstration of Eikonal tomography

Language: Python - Size: 429 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 8 - Forks: 5

magis-slac/gradoptics

Language: Python - Size: 21.4 MB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 11 - Forks: 2

algotom/algotom.github.io

Main page of Algotom's documentation

Language: HTML - Size: 73.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

tomography/holotomocupy

X-ray holo-tomography reconstruction code

Language: Python - Size: 51.6 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 2

LAVI-USP/pyDBT

This package is a python extension of the DBT toolbox from LAVI-USP

Language: C++ - Size: 94.7 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 13 - Forks: 4

munechika-koyo/cherab_phix

CHERAB for PHiX, which is a small tokamak device in the Tokyo Institute of Technology

Language: Python - Size: 279 MB - Last synced at: 26 days ago - Pushed at: 2 months ago - Stars: 3 - Forks: 0